View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9020_high_3 (Length: 287)
Name: NF9020_high_3
Description: NF9020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9020_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 113 - 272
Target Start/End: Complemental strand, 1803777 - 1803616
Alignment:
| Q |
113 |
tatgtatttgtaataggctttaagacacattgactcatcaaagacacgttgatgtgaccaattttcgacaatatgccacttgagaaacggataattgttg |
212 |
Q |
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| T |
1803777 |
tatgtatttgtaataggctttaagacacattgactcatcaaagacacgttgatgtgaccaattttcgacaatatgccacttgagaaacggataattgttg |
1803678 |
T |
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| Q |
213 |
ttgattgt--gcattcatctccatcaaagaaacttggatgtctataaaatcaatctctcaac |
272 |
Q |
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| T |
1803677 |
ttgattgtgcgcattcatctccatcaaagaaacttggatgtctataaaatcaatctctcaac |
1803616 |
T |
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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 1803873 - 1803809
Alignment:
| Q |
19 |
ttaatcacttagttaacaagacccttagtcatcaattatgtttctcataggtcaatttagtccat |
83 |
Q |
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| T |
1803873 |
ttaatcacttagttaacaagacccttagtcatcaattatgtttctcataggtcaatttagtccat |
1803809 |
T |
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