View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9020_low_14 (Length: 276)
Name: NF9020_low_14
Description: NF9020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9020_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 43403554 - 43403311
Alignment:
| Q |
17 |
agatcacgacgatgcaagactcaattggtattcctacatgcttttcaccagcagataagctaacagatgatcatggaggcggtgtgacacgttccggtca |
116 |
Q |
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| T |
43403554 |
agatcacgacgatgcaagactcaattggtattcctacatgcttttcaccagcagataagctaaccgatgatcatggaggcggtgtgacacgttccggtca |
43403455 |
T |
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| Q |
117 |
gagtgtatacatgtcagtatacagaacaaaggtagctgatcattgccgtttgataaccatcacatggtgcaaaaacttgttgcttcatggactatcaata |
216 |
Q |
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| T |
43403454 |
gagtgtatacatgtcagtatacagaacaaaggtagctgatcattgccgtttgataaccatcacatggtgcaaaaacttgttgcttcatggactatcaata |
43403355 |
T |
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| Q |
217 |
tcagtagaaggtccagaaggagaagcccaatatacctgcaaagt |
260 |
Q |
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| T |
43403354 |
tcagtagaaggtccagaaggagaagcccaatatacctgcaaagt |
43403311 |
T |
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Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 124 - 206
Target Start/End: Complemental strand, 34432517 - 34432435
Alignment:
| Q |
124 |
tacatgtcagtatacagaacaaaggtagctgatcattgccgtttgataaccatcacatggtgcaaaaacttgttgcttcatgg |
206 |
Q |
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| T |
34432517 |
tacatgtcagtatacagaacaaagttagctggtcactgccgtttgatcacaatcacatggtgcaaaaacttgatgcttcatgg |
34432435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 206
Target Start/End: Original strand, 26100084 - 26100166
Alignment:
| Q |
124 |
tacatgtcagtatacagaacaaaggtagctgatcattgccgtttgataaccatcacatggtgcaaaaacttgttgcttcatgg |
206 |
Q |
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| T |
26100084 |
tacatgtcagtatacagaagaatggtagatgatcactctcgtttgattacaatcacatagtgcgaaaacttgcttcttcatgg |
26100166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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