View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9020_low_2 (Length: 793)
Name: NF9020_low_2
Description: NF9020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9020_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 696; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 696; E-Value: 0
Query Start/End: Original strand, 1 - 756
Target Start/End: Complemental strand, 23287986 - 23287231
Alignment:
| Q |
1 |
gcaaagggagaatattctagtggtgtggacctcagaggatatccccaagtagttataatgaaggggtccaccataaaattgagagtaggatcgtggaacg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||| | |
|
|
| T |
23287986 |
gcaaagggagaatattctagtggtgttgacctccgaggatatccacaagtagttataatgaaggggtccgccataaaattgagagtaggatcatggaatg |
23287887 |
T |
|
| Q |
101 |
gtcgctcttttacgggatatccaacacaaccgttaaaaaagaagcaaatatttgaatttgtcataactgacaaagaagtgtatcatcgatatgaagtcgt |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23287886 |
gtcgctcttttaccggatatccaacacaaccattgaaagagaagcaaatatttgaatttgtcataactgacaaagaagtgtatcatcgatatgaagtcgt |
23287787 |
T |
|
| Q |
201 |
tgatagatcaatgatttgcgtatatagactgtccctcacaggaaatttgcaggctttatgttggacaagtcattcgagctcaaggatagttatctacacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23287786 |
tgatagatcaatgatttgcgtatatagactgtcccttacaggaaatttgcaggctttatgttggacaagtcattcaagctcaaggatagttatctacacc |
23287687 |
T |
|
| Q |
301 |
ggcgcggaagattcatgtgataattatgcaatgtgtggtgctaattctatatgcaatatggatggcaatgtgccgaaatgtgaatgcctgaaaagttatg |
400 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23287686 |
gacgcggaagattcatgtgataattatgcaatgtgtggtgctaattctatatgcaatatggatggcaatgtgccgaaatgtgaatgcctgaaaagttatg |
23287587 |
T |
|
| Q |
401 |
ttcctaagtttcctgaacaatggaatatatcatattggtctggtggctgcgttccgaaaattgaattagtttgccgaaacaacaacacaagtggcttctt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23287586 |
ttcctaagtttcctgaacaatggaatatatcatattggtctggtggctgcgttccgaaaattgaattagtttgcggaaacaacaacacaagtggcttctt |
23287487 |
T |
|
| Q |
501 |
gaggtacaaagaaatgaaattgccagacacttcttcatcgttgtataataagactatgaaccttgtggaatgtcaaagagtgtgtacgaaaaattgttcg |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23287486 |
gaggtacaaagaaatgaaattgccagacacttcttcatcgttgtataataagactatgaaccttgtggaatgtcaaagagtgtgtacgaaaaattgttcg |
23287387 |
T |
|
| Q |
601 |
tgtaccggttatgcaaatatggatatccgaaatggaggtagtggctgtcttctttggtttggtgatctggttgatatgagagtaatctcccaatgggggc |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23287386 |
tgtaccggttatgcaaatatggatatccgaaatggaggtagtggctgtcttctttggtttggtgatctggttgatatgagagtaatctcccaatgggggc |
23287287 |
T |
|
| Q |
701 |
aagatctctttatcaaagtcccttcttcagaactaggtacaaactttattatttag |
756 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23287286 |
aagatctctttatcaaagtcccttcttctgaactaggtacaaactttattatttag |
23287231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 666; E-Value: 0
Query Start/End: Original strand, 1 - 750
Target Start/End: Original strand, 23391402 - 23392151
Alignment:
| Q |
1 |
gcaaagggagaatattctagtggtgtggacctcagaggatatccccaagtagttataatgaaggggtccaccataaaattgagagtaggatcgtggaacg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23391402 |
gcaaagggagaatattctagtggtgttgacctccgaggatatccccaagtagttataatgaaggggtccgccataaaattgagagtaggatcgtggaacg |
23391501 |
T |
|
| Q |
101 |
gtcgctcttttacgggatatccaacacaaccgttaaaaaagaagcaaatatttgaatttgtcataactgacaaagaagtgtatcatcgatatgaagtcgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23391502 |
gtcgctcttttacgggatatccaacacaaccattaaaaaagaagcaaatatttgaatttgtcataactgacaaagaagtgtatcatcgatatgaagtcgt |
23391601 |
T |
|
| Q |
201 |
tgatagatcaatgatttgcgtatatagactgtccctcacaggaaatttgcaggctttatgttggacaagtcattcgagctcaaggatagttatctacacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23391602 |
tgatagatcaatgatttgcgtatatagactgtcccttacaggaaatttgcaggctttatgttggacaagtcattctagctcaaggatagttatctacacc |
23391701 |
T |
|
| Q |
301 |
ggcgcggaagattcatgtgataattatgcaatgtgtggtgctaattctatatgcaatatggatggcaatgtgccgaaatgtgaatgcctgaaaagttatg |
400 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23391702 |
gtcgcggaagattcatgtgataattatgcaatgtgtggtgctaattctatatgcaatatggatggcaatgtgccgaaatgtgaatgcctgaaaagttatg |
23391801 |
T |
|
| Q |
401 |
ttcctaagtttcctgaacaatggaatatatcatattggtctggtggctgcgttccgaaaattgaattagtttgccgaaacaacaacacaagtggcttctt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
23391802 |
ttcctaagtttcctgaacaatggaatatatcatattggtctggtggttgtgttccgaaaattgaattagtttgcggaaacaacaacacaagtgtcttctt |
23391901 |
T |
|
| Q |
501 |
gaggtacaaagaaatgaaattgccagacacttcttcatcgttgtataataagactatgaaccttgtggaatgtcaaagagtgtgtacgaaaaattgttcg |
600 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
23391902 |
gaggtacattgaaatgaaattgccagacacttcttcatcgttgtataataagactatgaaccttgtggaatgtcaaaaagtgtgtatgaaaaattgttca |
23392001 |
T |
|
| Q |
601 |
tgtaccggttatgcaaatatggatatccgaaatggaggtagtggctgtcttctttggtttggtgatctggttgatatgagagtaatctcccaatgggggc |
700 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23392002 |
tgtaccagttatgcaaatatggatatccgaaaaggcggtagtggctgtcttctttggtttggtgatctggttgatatgagagtaatctcccaatgggggc |
23392101 |
T |
|
| Q |
701 |
aagatctctttatcaaagtcccttcttcagaactaggtacaaactttatt |
750 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23392102 |
aagatctctatatcaaagtcccttcttcagaactaggtacaaattttatt |
23392151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 34 - 732
Target Start/End: Complemental strand, 23343437 - 23342739
Alignment:
| Q |
34 |
agaggatatccccaagtagttataatgaaggggtccaccataaaattgagagtaggatcgtggaacggtcgctcttttacgggatatccaacacaaccgt |
133 |
Q |
| |
|
||||||||||| ||| ||||| | |||||||| || |||| ||||||| ||||||| ||||| |||| ||||||| |||||||||| |||||||| |
|
|
| T |
23343437 |
agaggatatcctcaaatagttgttatgaagggatctgtgataagattgagaataggatcatggaatggtcaaacttttaccggatatccaatacaaccgt |
23343338 |
T |
|
| Q |
134 |
taaaaaagaagcaaatatttgaatttgtcataactgacaaagaagtgtatcatcgatatgaagtcgttgatagatcaatgatttgcgtatatag--actg |
231 |
Q |
| |
|
||||| | ||||||| || |||||||||||| ||||||||||||||||||||| | |||||| || ||||||| || || | ||| || || ||| |
|
|
| T |
23343337 |
taaaacaaaagcaaagatatgaatttgtcatgactgacaaagaagtgtatcattggtatgaactcattgatagctc--tggtgtgcaaatttatgcactc |
23343240 |
T |
|
| Q |
232 |
tccctcacaggaaatttgcaggctttatgttggacaagtcattcgagctcaaggatagttatctacaccggcgcggaagattcatgtgataattatgcaa |
331 |
Q |
| |
|
|||| |||||| |||| |||||| |||||||||| | | ||| |||||||| ||| | || ||| ||||||||| ||||||| |||||||| |
|
|
| T |
23343239 |
tcccctttgggaaatatgcatgctttagcttggacaagtgaaacaagcgataggatagtgatcgaaactggcatggaagattcgtgtgatagttatgcaa |
23343140 |
T |
|
| Q |
332 |
tgtgtggtgctaattctatatgcaatatggatggcaatgtgccgaaatgtgaatgcctgaaaagttatgttcctaagtttcctgaacaatggaatatatc |
431 |
Q |
| |
|
|||||||||||||||| ||||||||||||| | ||||| || |||||||||||| | ||| |||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
23343139 |
tgtgtggtgctaattcagtatgcaatatggacgaaaatgttcctaaatgtgaatgcttaaaaggttatgttcctaagtttcacgaacagtggaatatatc |
23343040 |
T |
|
| Q |
432 |
atattggtctggtggctgcgttccgaaaattgaattagtttgccgaaacaacaacacaagtggcttcttgaggtacaaagaaatgaaattgccagacact |
531 |
Q |
| |
|
|||||||||| |||| || |||||||||||| | | |||| ||||| |||| ||||||||||| ||||| ||||||||||||||| ||||| |
|
|
| T |
23343039 |
atattggtctagtggttgtgttccgaaaattaagtctttttgtgataacaattcaacaaatggcttcttgaagtacagagaaatgaaattgccggacaca |
23342940 |
T |
|
| Q |
532 |
tcttcatcgttgtataataagactatgaaccttgtggaatgtcaaagagtgtgtacgaaaaattgttcgtgtaccggttatgcaaatatggatatccgaa |
631 |
Q |
| |
|
|||||||| ||| ||||| || |||| ||| |||||||||||| || ||| | |||||| ||||||||||| | |||| ||||| ||||||||||| |
|
|
| T |
23342939 |
tcttcatcaaggtacaataaaaccatgagcctgctggaatgtcaaaaagcgtgcatgaaaaactgttcgtgtacggcttatacaaatgcggatatccgaa |
23342840 |
T |
|
| Q |
632 |
atggaggtagtggctgtcttctttggtttggtgatctggttgatatgagagtaatctcccaatgggggcaagatctctttatcaaagtcccttcttcaga |
731 |
Q |
| |
|
||||||| ||||| ||| | |||||| ||| ||||||| |||| |||||| | |||| || ||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
23342839 |
atggaggaagtggttgtttgctttggattgatgatctgattgacatgagaacattctctcagtggggacaagatctctatatcaaagtcccttcttcaga |
23342740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 34 - 732
Target Start/End: Original strand, 23383806 - 23384504
Alignment:
| Q |
34 |
agaggatatccccaagtagttataatgaaggggtccaccataaaattgagagtaggatcgtggaacggtcgctcttttacgggatatccaacacaaccgt |
133 |
Q |
| |
|
||||||||||| ||| ||||| | |||||||| || |||| ||||||| ||||||| ||||| |||| ||||||| |||||||||| |||||||| |
|
|
| T |
23383806 |
agaggatatcctcaaatagttgttatgaagggatctgtgataagattgagaataggatcatggaatggtcaaacttttaccggatatccaatacaaccgt |
23383905 |
T |
|
| Q |
134 |
taaaaaagaagcaaatatttgaatttgtcataactgacaaagaagtgtatcatcgatatgaagtcgttgatagatcaatgatttgcgtatatag--actg |
231 |
Q |
| |
|
||||| | ||||||| || |||||||||||| ||||||||||||||||||||| | |||||| || ||||||| || || | ||| || || ||| |
|
|
| T |
23383906 |
taaaacaaaagcaaagatatgaatttgtcatgactgacaaagaagtgtatcattggtatgaactcattgatagctc--tggtgtgcaaatttatgcactc |
23384003 |
T |
|
| Q |
232 |
tccctcacaggaaatttgcaggctttatgttggacaagtcattcgagctcaaggatagttatctacaccggcgcggaagattcatgtgataattatgcaa |
331 |
Q |
| |
|
|||| ||||||||||| |||||| |||||||||| | | ||| |||||||| ||| | || ||| ||||||||| ||||||| |||||||| |
|
|
| T |
23384004 |
tcccctttgggaaatttgcatgctttagcttggacaagtgaaacaagcgataggatagtgatcgaaactggcatggaagattcgtgtgatagttatgcaa |
23384103 |
T |
|
| Q |
332 |
tgtgtggtgctaattctatatgcaatatggatggcaatgtgccgaaatgtgaatgcctgaaaagttatgttcctaagtttcctgaacaatggaatatatc |
431 |
Q |
| |
|
|||||||||||||||| ||||||||||||| | ||||| || |||||||||||| | ||| |||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
23384104 |
tgtgtggtgctaattcagtatgcaatatggacgaaaatgttcctaaatgtgaatgcttaaaaggttatgttcctaagtttctcgaacagtggaatatatc |
23384203 |
T |
|
| Q |
432 |
atattggtctggtggctgcgttccgaaaattgaattagtttgccgaaacaacaacacaagtggcttcttgaggtacaaagaaatgaaattgccagacact |
531 |
Q |
| |
|
|||||||||| |||| || |||||||||||| | | |||| | ||| |||| ||||||||||| |||| ||||||||||||||| ||||| |
|
|
| T |
23384204 |
atattggtctagtggttgtgttccgaaaattaagtctttttgtgatatcaattctacaattggcttcttgaagtactgagaaatgaaattgccggacaca |
23384303 |
T |
|
| Q |
532 |
tcttcatcgttgtataataagactatgaaccttgtggaatgtcaaagagtgtgtacgaaaaattgttcgtgtaccggttatgcaaatatggatatccgaa |
631 |
Q |
| |
|
|||||||| | ||| ||||| || |||| ||| |||||||||||| || ||| | |||||| ||||||||||| | |||| ||||| ||||||||||| |
|
|
| T |
23384304 |
tcttcatcatggtacaataaaaccatgagcctgctggaatgtcaaaaagcgtgcatgaaaaactgttcgtgtacggcttatacaaatgcggatatccgaa |
23384403 |
T |
|
| Q |
632 |
atggaggtagtggctgtcttctttggtttggtgatctggttgatatgagagtaatctcccaatgggggcaagatctctttatcaaagtcccttcttcaga |
731 |
Q |
| |
|
||||||| ||||| ||| | |||||| ||| ||||||| |||| |||||| | |||| || ||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
23384404 |
atggaggaagtggttgtttgctttggattgatgatctgtttgacatgagaacattctctcagtggggacaagatctctatatcaaagtcccttcttcaga |
23384503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 332 - 435
Target Start/End: Complemental strand, 23363489 - 23363386
Alignment:
| Q |
332 |
tgtgtggtgctaattctatatgcaatatggatggcaatgtgccgaaatgtgaatgcctgaaaagttatgttcctaagtttcctgaacaatggaatatatc |
431 |
Q |
| |
|
||||||||| | |||||||||||||||||||||| ||||| || | |||||||| ||||| | |||||||||||||||||| |||||||| | ||||| |
|
|
| T |
23363489 |
tgtgtggtggttattctatatgcaatatggatggaaatgttcccacttgtgaatgtgtgaaaggctatgttcctaagtttcctcaacaatggcaaatatc |
23363390 |
T |
|
| Q |
432 |
atat |
435 |
Q |
| |
|
|||| |
|
|
| T |
23363389 |
atat |
23363386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 332 - 435
Target Start/End: Original strand, 23348236 - 23348339
Alignment:
| Q |
332 |
tgtgtggtgctaattctatatgcaatatggatggcaatgtgccgaaatgtgaatgcctgaaaagttatgttcctaagtttcctgaacaatggaatatatc |
431 |
Q |
| |
|
||||||||| | ||||||||||||||||| |||| ||||| || | |||||||| ||||| | || ||||||||||||||| |||||| | | ||||| |
|
|
| T |
23348236 |
tgtgtggtggttattctatatgcaatatgaatgggaatgttcccacttgtgaatgtgtgaaaggctacgttcctaagtttcctcaacaattgcaaatatc |
23348335 |
T |
|
| Q |
432 |
atat |
435 |
Q |
| |
|
|||| |
|
|
| T |
23348336 |
atat |
23348339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 3980441 - 3980380
Alignment:
| Q |
379 |
tgtgaatgcctgaaaagttatgttcctaagtttcctgaacaatggaatatatcatattggtc |
440 |
Q |
| |
|
||||||||| ||||| | |||| |||||||||||||||| |||||||| || ||| |||||| |
|
|
| T |
3980441 |
tgtgaatgcatgaaaggatatgctcctaagtttcctgaagaatggaatctagcattttggtc |
3980380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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