View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9020_low_4 (Length: 498)

Name: NF9020_low_4
Description: NF9020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9020_low_4
NF9020_low_4
[»] chr3 (38 HSPs)
chr3 (314-484)||(42575894-42576064)
chr3 (1-190)||(42576168-42576356)
chr3 (191-246)||(42576062-42576117)
chr3 (12-87)||(10856676-10856750)
chr3 (16-87)||(51734611-51734680)
chr3 (12-87)||(48511460-48511535)
chr3 (12-87)||(53966212-53966287)
chr3 (12-62)||(54369043-54369093)
chr3 (16-88)||(15820659-15820731)
chr3 (12-87)||(10450698-10450773)
chr3 (12-62)||(5321586-5321636)
chr3 (12-86)||(9179114-9179187)
chr3 (12-62)||(27219333-27219383)
chr3 (12-62)||(41380728-41380778)
chr3 (12-62)||(43101421-43101471)
chr3 (12-62)||(44573330-44573380)
chr3 (12-62)||(47833712-47833762)
chr3 (12-62)||(48511689-48511739)
chr3 (36-90)||(48837082-48837135)
chr3 (12-81)||(9178893-9178961)
chr3 (12-87)||(10453753-10453826)
chr3 (15-87)||(24453758-24453829)
chr3 (12-87)||(9180348-9180422)
chr3 (16-87)||(10450478-10450549)
chr3 (12-87)||(11244591-11244666)
chr3 (16-87)||(42190530-42190601)
chr3 (12-62)||(3985777-3985827)
chr3 (12-58)||(4029694-4029740)
chr3 (12-62)||(4256238-4256288)
chr3 (12-62)||(13769341-13769391)
chr3 (12-62)||(22666368-22666418)
chr3 (12-62)||(34715505-34715555)
chr3 (12-62)||(45443284-45443334)
chr3 (12-62)||(48685367-48685417)
chr3 (12-58)||(49477542-49477588)
chr3 (12-58)||(54495539-54495585)
chr3 (12-61)||(50203907-50203956)
chr3 (12-56)||(29763746-29763790)
[»] chr7 (35 HSPs)
chr7 (12-87)||(39550028-39550102)
chr7 (12-87)||(34748757-34748832)
chr7 (12-87)||(36092649-36092722)
chr7 (12-87)||(36270520-36270594)
chr7 (12-87)||(37755988-37756063)
chr7 (12-87)||(37756214-37756289)
chr7 (12-87)||(37761962-37762037)
chr7 (12-89)||(36495643-36495720)
chr7 (12-87)||(33909116-33909191)
chr7 (12-87)||(36495868-36495943)
chr7 (12-87)||(44314354-44314429)
chr7 (12-87)||(47346144-47346219)
chr7 (12-87)||(47346373-47346448)
chr7 (12-62)||(7135293-7135343)
chr7 (12-62)||(37272095-37272145)
chr7 (12-62)||(43384330-43384380)
chr7 (15-87)||(27585235-27585307)
chr7 (12-61)||(40121989-40122038)
chr7 (12-61)||(43383996-43384045)
chr7 (11-87)||(19843687-19843762)
chr7 (12-88)||(36270747-36270823)
chr7 (12-89)||(37530973-37531052)
chr7 (15-62)||(1663658-1663705)
chr7 (12-87)||(20296243-20296317)
chr7 (12-87)||(22206328-22206402)
chr7 (12-87)||(22228337-22228411)
chr7 (12-87)||(22686783-22686857)
chr7 (12-62)||(1661241-1661291)
chr7 (12-62)||(41670587-41670637)
chr7 (12-62)||(43167943-43167993)
chr7 (12-62)||(43288268-43288318)
chr7 (12-58)||(48114005-48114051)
chr7 (13-58)||(21557024-21557069)
chr7 (38-83)||(27729554-27729598)
chr7 (12-56)||(47856041-47856085)
[»] chr5 (27 HSPs)
chr5 (12-87)||(22196603-22196677)
chr5 (12-85)||(22196376-22196448)
chr5 (12-87)||(30329815-30329890)
chr5 (12-87)||(32395364-32395439)
chr5 (12-62)||(38131768-38131818)
chr5 (13-87)||(14769883-14769956)
chr5 (12-87)||(83860-83935)
chr5 (12-87)||(84084-84159)
chr5 (12-62)||(873746-873796)
chr5 (12-62)||(1028143-1028193)
chr5 (12-62)||(37995684-37995734)
chr5 (13-62)||(27760079-27760128)
chr5 (20-87)||(33040264-33040331)
chr5 (12-87)||(19439840-19439914)
chr5 (12-87)||(29396393-29396468)
chr5 (12-62)||(13843701-13843751)
chr5 (12-62)||(13844017-13844067)
chr5 (12-62)||(29432416-29432466)
chr5 (12-62)||(30588061-30588111)
chr5 (18-87)||(33040449-33040518)
chr5 (12-58)||(35527038-35527084)
chr5 (12-58)||(38376739-38376785)
chr5 (12-58)||(43490306-43490352)
chr5 (12-57)||(3762915-3762960)
chr5 (13-62)||(28009848-28009897)
chr5 (16-87)||(24792320-24792392)
chr5 (12-79)||(39668467-39668532)
[»] chr1 (29 HSPs)
chr1 (13-87)||(45443200-45443273)
chr1 (12-88)||(12287827-12287902)
chr1 (12-87)||(17294957-17295032)
chr1 (12-88)||(18585017-18585092)
chr1 (12-87)||(33562177-33562252)
chr1 (12-87)||(29228654-29228729)
chr1 (12-87)||(40521543-40521617)
chr1 (12-87)||(45858635-45858709)
chr1 (12-62)||(2697381-2697431)
chr1 (12-62)||(4022175-4022225)
chr1 (12-79)||(28509437-28509506)
chr1 (16-88)||(4187567-4187639)
chr1 (12-88)||(29228426-29228502)
chr1 (15-87)||(31411613-31411685)
chr1 (16-87)||(51722232-51722303)
chr1 (12-62)||(17419791-17419841)
chr1 (17-78)||(20208137-20208196)
chr1 (17-78)||(20208436-20208495)
chr1 (12-62)||(40642826-40642876)
chr1 (13-62)||(8520144-8520193)
chr1 (16-87)||(4187336-4187407)
chr1 (36-87)||(17294846-17294897)
chr1 (14-87)||(29383675-29383747)
chr1 (12-87)||(30604510-30604585)
chr1 (12-62)||(19937093-19937143)
chr1 (12-62)||(31305715-31305765)
chr1 (12-62)||(38474287-38474337)
chr1 (12-58)||(39649134-39649180)
chr1 (12-62)||(40664214-40664264)
[»] chr2 (33 HSPs)
chr2 (12-88)||(4506090-4506165)
chr2 (12-87)||(10862108-10862182)
chr2 (12-62)||(18901914-18901964)
chr2 (11-87)||(32197182-32197257)
chr2 (12-88)||(39420675-39420751)
chr2 (12-87)||(11349843-11349918)
chr2 (12-87)||(15962207-15962282)
chr2 (12-87)||(32810926-32811001)
chr2 (12-87)||(33532786-33532860)
chr2 (12-86)||(936792-936866)
chr2 (12-62)||(3977053-3977103)
chr2 (12-62)||(7877848-7877898)
chr2 (12-62)||(43169246-43169296)
chr2 (13-62)||(30166130-30166179)
chr2 (12-87)||(4342308-4342382)
chr2 (12-87)||(11350237-11350312)
chr2 (11-58)||(17727412-17727459)
chr2 (11-58)||(26847291-26847338)
chr2 (12-87)||(28193625-28193699)
chr2 (12-58)||(883651-883697)
chr2 (16-62)||(3976209-3976255)
chr2 (12-62)||(6183416-6183466)
chr2 (12-58)||(6986466-6986512)
chr2 (12-62)||(11969056-11969106)
chr2 (12-58)||(12419846-12419892)
chr2 (12-58)||(12431906-12431952)
chr2 (12-62)||(21213935-21213985)
chr2 (12-62)||(25441700-25441750)
chr2 (12-62)||(43195788-43195838)
chr2 (12-57)||(27545166-27545211)
chr2 (13-62)||(43688472-43688521)
chr2 (12-87)||(14280259-14280334)
chr2 (15-87)||(28193388-28193459)
[»] chr8 (19 HSPs)
chr8 (12-87)||(15711476-15711550)
chr8 (12-87)||(38287787-38287861)
chr8 (11-88)||(35908657-35908733)
chr8 (11-87)||(18464049-18464125)
chr8 (12-87)||(39587908-39587981)
chr8 (12-87)||(9596043-9596117)
chr8 (12-87)||(14019787-14019862)
chr8 (12-87)||(20232447-20232522)
chr8 (12-62)||(18905860-18905910)
chr8 (12-62)||(21085198-21085248)
chr8 (12-62)||(34248081-34248131)
chr8 (12-87)||(17607264-17607338)
chr8 (11-87)||(9596268-9596343)
chr8 (12-58)||(5720917-5720963)
chr8 (12-62)||(8276553-8276603)
chr8 (12-62)||(23027555-23027605)
chr8 (12-62)||(34248363-34248413)
chr8 (12-58)||(43599319-43599365)
chr8 (12-52)||(3183961-3184001)
[»] chr6 (15 HSPs)
chr6 (12-88)||(33396285-33396361)
chr6 (12-87)||(26842699-26842774)
chr6 (12-62)||(8144021-8144071)
chr6 (13-62)||(24055160-24055209)
chr6 (11-88)||(25183981-25184058)
chr6 (12-60)||(1744892-1744940)
chr6 (12-60)||(12134533-12134581)
chr6 (14-62)||(30539239-30539287)
chr6 (11-62)||(19753653-19753704)
chr6 (11-62)||(21043830-21043881)
chr6 (12-87)||(33396505-33396579)
chr6 (12-62)||(10418388-10418438)
chr6 (12-62)||(25184214-25184264)
chr6 (12-62)||(26339892-26339942)
chr6 (13-62)||(31924-31973)
[»] chr4 (30 HSPs)
chr4 (12-88)||(33912022-33912097)
chr4 (12-87)||(11290148-11290223)
chr4 (12-62)||(51469485-51469535)
chr4 (15-87)||(4026053-4026124)
chr4 (12-88)||(37097781-37097856)
chr4 (12-87)||(46528973-46529047)
chr4 (12-87)||(50868063-50868138)
chr4 (12-62)||(15665157-15665207)
chr4 (12-62)||(22867088-22867138)
chr4 (12-62)||(29669413-29669463)
chr4 (12-62)||(48843067-48843117)
chr4 (16-62)||(51470487-51470533)
chr4 (12-62)||(53740186-53740236)
chr4 (15-88)||(37288922-37288994)
chr4 (12-87)||(26941841-26941915)
chr4 (12-87)||(52810675-52810749)
chr4 (44-87)||(52810934-52810976)
chr4 (12-62)||(990551-990601)
chr4 (12-58)||(28497264-28497310)
chr4 (12-62)||(29669728-29669778)
chr4 (12-62)||(36558516-36558566)
chr4 (12-58)||(43943681-43943727)
chr4 (12-62)||(43972359-43972409)
chr4 (12-62)||(45426986-45427036)
chr4 (12-62)||(50858332-50858382)
chr4 (12-62)||(53739870-53739920)
chr4 (12-62)||(56509613-56509663)
chr4 (13-62)||(13254387-13254436)
chr4 (13-62)||(50858016-50858065)
chr4 (14-58)||(50307284-50307328)
[»] scaffold0012 (1 HSPs)
scaffold0012 (12-87)||(165764-165838)
[»] scaffold0029 (1 HSPs)
scaffold0029 (12-58)||(76860-76906)
[»] scaffold0166 (1 HSPs)
scaffold0166 (16-87)||(34703-34775)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 314 - 484
Target Start/End: Complemental strand, 42576064 - 42575894
Alignment:
Q  314 taaagtcttgtggtggtgtgagttctgttgctattcggtggggggtgtggggcggttgtccatcttgcccatcctatgggttctacttttctttctttat 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42576064 taaagtcttgtggtggtgtgagttctgttgctattcggtggggggtgtggggcggttgtccatcttgcccatcctatgggttctacttttctttctttat 42575965  T
Q  414 tgcagggtggagttgcagcttttcgttggagtgtctctagttccttgggtggttttttgtctgtgttagat 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42575964 tgcagggtggagttgcagcttttcgttggagtgtctctagttccttgggtggttttttgtctgtgttagat 42575894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 42576356 - 42576168
Alignment:
Q  1 agtttataaatctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaacaggttgcattagtt 100  Q
    ||||||||||||||||||||||||||| | |||| || ||||||||||||||||||||||||  ||||| ||||||||||  ||||||||||||||||||    
T  42576356 agtttataaatctctttataaactcttcttgagaatcttatcaatccgatgtgggactaaatc-ccaccaagtgttggccaataacaggttgcattagtt 42576258  T
Q  101 agtcctcgcattatcagtattttaaaatggatctattaaattgcaaaatacatatcaagtttttcccaatatatgaatatgttatcaaat 190  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42576257 agtccttgcattatcagtattttaaaatggatctattaaattgcaaaatgcatatcaagtttttcccaatatatgaatatgttatcaaat 42576168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 42576117 - 42576062
Alignment:
Q  191 cctcgtcttgcatttagtgaacagggtgaagtttttagtctgaaagtaattcctaa 246  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42576117 cctcgtcttgcatttagtgaacagggtgaagtttttagcctgaaagtaattcctaa 42576062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 10856676 - 10856750
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    ||||||||||||||||||| ||| ||||||| |||||||||||||||||||  ||||| ||| |||||||||||||    
T  10856676 ctctttataaactcttttcaagaatcctatccatccgatgtgggactaaat-cccaccaagtattggccgctaaca 10856750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 51734611 - 51734680
Alignment:
Q  16 ttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||| || ||| ||||||| |||||||||||||||||||  ||||||||||||||| |||||||    
T  51734611 ttataaactcttctcaagaatcctatctatccgatgtgggactaaat--ccaccgagtgttggctgctaaca 51734680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 48511460 - 48511535
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| ||||||| |||||||||||||||||||  |  ||||| ||||||||||||||    
T  48511460 ctctttataaactcttctcaagattcctatctatccgatgtgggactaaatcccacccgagagttggccgctaaca 48511535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 53966287 - 53966212
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| ||||||| |||||||||||||||||||  |  ||||| ||||||||||||||    
T  53966287 ctctttataaactcttctcaagaatcctatctatccgatgtgggactaaatcccacccgagagttggccgctaaca 53966212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 54369093 - 54369043
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||||||||| |||||||||||||||||||    
T  54369093 ctctttataaactcttctcaagagtcctatctatccgatgtgggactaaat 54369043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 15820659 - 15820731
Alignment:
Q  16 ttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaacag 88  Q
    |||||||||||| || ||| ||||||| |||||||||||||||||||  |  |||||||||||| ||||||||    
T  15820659 ttataaactcttctcaagaatcctatctatccgatgtgggactaaatcccacccgagtgttggctgctaacag 15820731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 10450698 - 10450773
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || |||  |||||| |||||||||||||||||||  |  |||||||||||| |||||||    
T  10450698 ctctttataaactcttctcaagaaacctatctatccgatgtgggactaaatcccacccgagtgttggctgctaaca 10450773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 5321586 - 5321636
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    ||||||||||||||||||| | | ||||||| |||||||||||||||||||    
T  5321586 ctctttataaactcttttcaaaaatcctatctatccgatgtgggactaaat 5321636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 9179187 - 9179114
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaac 86  Q
    |||||||||||||||| ||  || || | || |||||||||||||||||||  ||||||||||||||||||||||    
T  9179187 ctctttataaactcttctcatgaatcatgtctatccgatgtgggactaaatc-ccaccgagtgttggccgctaac 9179114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 27219383 - 27219333
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| |||||||||||||||||||    
T  27219383 ctctttataaactcttctcaagagtgctatctatccgatgtgggactaaat 27219333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 41380778 - 41380728
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| |||||||||||||||||||    
T  41380778 ctctttataaactcttctcaagagtgctatctatccgatgtgggactaaat 41380728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 43101421 - 43101471
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||||||||| ||| |||||||||||||||    
T  43101421 ctctttataaactcttctcaagagtcctatctatctgatgtgggactaaat 43101471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 44573380 - 44573330
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| |||||||||||||||||||    
T  44573380 ctctttataaactcttctcaagagtactatctatccgatgtgggactaaat 44573330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 47833712 - 47833762
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||| ||| || ||||||||||| |||||||||||||||||||    
T  47833712 ctctttataaacacttctcaagagtcctatctatccgatgtgggactaaat 47833762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 48511689 - 48511739
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||| ||||||| |||||||||||||||||||    
T  48511689 ctctttataaactcttctcaagattcctatctatccgatgtgggactaaat 48511739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 48837082 - 48837135
Alignment:
Q  36 tcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaacaggt 90  Q
    ||||||| |||||||||||||||||||  ||||||||||||||| ||||||||||    
T  48837082 tcctatctatccgatgtgggactaaat-cccaccgagtgttggcagctaacaggt 48837135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 9178961 - 9178893
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccg 81  Q
    |||||||||||||||| |  ||| ||||||| ||||||| |||||||||||  |||||||||||||||||    
T  9178961 ctctttataaactcttcttaagaatcctatctatccgatatgggactaaat-tccaccgagtgttggccg 9178893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 10453753 - 10453826
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||| ||| || ||| ||||||| ||||||| |||||||||||  ||||| ||||||||| |||||||    
T  10453753 ctctttataaacccttctcaagaatcctatctatccgatctgggactaaat--ccaccaagtgttggctgctaaca 10453826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 24453829 - 24453758
Alignment:
Q  15 tttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    ||||||||||||| || |||  |||||| |||||||||||||||||||  ||  |||||||||||||||||||    
T  24453829 tttataaactcttctcaagaaccctatctatccgatgtgggactaaat-cccctcgagtgttggccgctaaca 24453758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 9180422 - 9180348
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    ||||||||||||| || || ||| ||||||| |||||||||||||||||||  | | |||| ||||||||||||||    
T  9180422 ctctttataaacttttctcaagaatcctatctatccgatgtgggactaaat-ccgatcgagggttggccgctaaca 9180348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 10450478 - 10450549
Alignment:
Q  16 ttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||| || |||  |||||| |||||||||||||||||||  |  |||||||||||| |||||||    
T  10450478 ttataaactcttctcaagaaacctatctatccgatgtgggactaaatcccacccgagtgttggctgctaaca 10450549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 11244591 - 11244666
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || |||  |||||| |||||||||||||||||||  |  |||||||||| | |||||||    
T  11244591 ctctttataaactcttctcaagaaacctatctatccgatgtgggactaaatcccacccgagtgttgactgctaaca 11244666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 42190530 - 42190601
Alignment:
Q  16 ttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||| || ||| ||||||| ||||||||||||| |||||  |  ||||| ||||||||||||||    
T  42190530 ttataaactcttctcaagattcctatctatccgatgtgggattaaatcccacccgagagttggccgctaaca 42190601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 3985827 - 3985777
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || | |||| |||| |||||||||||||||||||    
T  3985827 ctctttataaactcttctcaaaagtcatatctatccgatgtgggactaaat 3985777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 4029694 - 4029740
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggact 58  Q
    |||||||||||||||| || |||||| |||| |||||||||||||||    
T  4029694 ctctttataaactcttctcaagagtcttatctatccgatgtgggact 4029740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 4256288 - 4256238
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || |||||  |||| |||||||||||||||||||    
T  4256288 ctctttataaactcttctcaagagtgttatccatccgatgtgggactaaat 4256238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 13769341 - 13769391
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| |||| ||||||||||||||    
T  13769341 ctctttataaactcttctcaagagtgctatctatccaatgtgggactaaat 13769391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 22666368 - 22666418
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||| ||||||| |||||| ||||||||||||    
T  22666368 ctctttataaactcttctcaagaatcctatctatccgacgtgggactaaat 22666418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 34715505 - 34715555
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || | ||| ||||| |||||||||||||||||||    
T  34715505 ctctttataaactcttctcaaaagtgctatctatccgatgtgggactaaat 34715555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 45443334 - 45443284
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| |||| ||||||||||||||    
T  45443334 ctctttataaactcttctcaagagtgctatctatccaatgtgggactaaat 45443284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 48685367 - 48685417
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||  |||||||||||||||||||    
T  48685367 ctctttataaactcttctcaagagtactatatatccgatgtgggactaaat 48685417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 49477588 - 49477542
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggact 58  Q
    |||||||||||||||| || |||||| |||| |||||||||||||||    
T  49477588 ctctttataaactcttctcaagagtcttatctatccgatgtgggact 49477542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 54495585 - 54495539
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggact 58  Q
    |||||||||||||||| || |||||| |||| |||||||||||||||    
T  54495585 ctctttataaactcttctcaagagtcttatctatccgatgtgggact 54495539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 50203907 - 50203956
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaa 61  Q
    |||||||||||||||| || |||||| |||| |||||||||| |||||||    
T  50203907 ctctttataaactcttctcaagagtcttatctatccgatgtgagactaaa 50203956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 29763746 - 29763790
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtggga 56  Q
    |||||||||||||||| || |||||| |||| |||||||||||||    
T  29763746 ctctttataaactcttatcaagagtcttatctatccgatgtggga 29763790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 39550028 - 39550102
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| ||||||| |||||||||||||||||||  |||||||||||||||||||||||    
T  39550028 ctctttataaactcttctcaagaatcctatctatccgatgtgggactaaat-cccaccgagtgttggccgctaaca 39550102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 34748832 - 34748757
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| ||||||| |||||||||||||||||||  |  ||||||||||||||||||||    
T  34748832 ctctttataaactcttctcaagaatcctatctatccgatgtgggactaaatcccacccgagtgttggccgctaaca 34748757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 36092649 - 36092722
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||| ||||||||||| || ||| ||||||| ||||||||||||||||||||  |||||||||||||| |||||||    
T  36092649 ctctctataaactcttctcaagaatcctatctatccgatgtgggactaaata--caccgagtgttggcggctaaca 36092722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 36270520 - 36270594
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||| | || ||| ||||||| |||||||||||||||||||  ||||||||||||| |||||||||    
T  36270520 ctctttataaactcgtctcaagaatcctatctatccgatgtgggactaaat-cccaccgagtgttgaccgctaaca 36270594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 37755988 - 37756063
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| ||||||| |||||||||||||||||||  |  ||||| ||||||||||||||    
T  37755988 ctctttataaactcttctcaagattcctatctatccgatgtgggactaaatcccacccgagagttggccgctaaca 37756063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 37756214 - 37756289
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| ||||||| |||||||||||||||||||  |  ||||| ||||||||||||||    
T  37756214 ctctttataaactcttctcaagattcctatctatccgatgtgggactaaatcccacccgagagttggccgctaaca 37756289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 37761962 - 37762037
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| ||||||| |||||||||||||||||||  |  ||||| ||||||||||||||    
T  37761962 ctctttataaactcttctcaagattcctatctatccgatgtgggactaaatcccacccgagagttggccgctaaca 37762037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 36495720 - 36495643
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaacagg 89  Q
    ||||||||||||| || || ||| ||||||| |||||||||||||||||||  |  ||||| ||||||||||||||||    
T  36495720 ctctttataaactattctcaagaatcctatctatccgatgtgggactaaatgccacccgagagttggccgctaacagg 36495643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 33909191 - 33909116
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| ||||||| |||||||||||||||||||  |  ||||| |||||||| |||||    
T  33909191 ctctttataaactcttctcaagaatcctatctatccgatgtgggactaaatcccacccgagagttggccgttaaca 33909116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 36495943 - 36495868
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    ||||||||||||| || || ||| ||||||| |||||||||||||||||||  |  ||||| ||||||||||||||    
T  36495943 ctctttataaactattctcaagaatcctatctatccgatgtgggactaaatcccacccgagagttggccgctaaca 36495868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 44314354 - 44314429
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| ||  ||| |||||||||||||||||||  |  ||||||||||||||||||||    
T  44314354 ctctttataaactcttctcaagaatctcatctatccgatgtgggactaaatcccacccgagtgttggccgctaaca 44314429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 47346144 - 47346219
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| ||||||| ||| |||||||||||||||  |  ||||| ||||||||||||||    
T  47346144 ctctttataaactcttctcaagattcctatctatctgatgtgggactaaatcccacccgagagttggccgctaaca 47346219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 47346373 - 47346448
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| |||||||  ||||||||||||||||||  |  ||||| ||||||||||||||    
T  47346373 ctctttataaactcttctcaagattcctatctttccgatgtgggactaaatcccacccgagagttggccgctaaca 47346448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 7135293 - 7135343
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||||||||| |||||||||| ||||||||    
T  7135293 ctctttataaactcttctcaagagtcctatctatccgatgtgtgactaaat 7135343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 37272095 - 37272145
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||||||||| | |||||||||||||||||    
T  37272095 ctctttataaactcttatcaagagtcctatctaaccgatgtgggactaaat 37272145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 43384330 - 43384380
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||| ||||||| |||||||||||||||||||    
T  43384330 ctctttataaactcttctcaagaatcctatctatccgatgtgggactaaat 43384380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 27585307 - 27585235
Alignment:
Q  15 tttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccacc-gagtgttggccgctaaca 87  Q
    ||||||||||||| || ||| ||||||| |||||||||||||||||||  ||||| |||||||||| |||||||    
T  27585307 tttataaactcttctcaagaatcctatctatccgatgtgggactaaat-cccacctgagtgttggctgctaaca 27585235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 40121989 - 40122038
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaa 61  Q
    |||||||||||||||| || ||||| ||||| ||||||||||||||||||    
T  40121989 ctctttataaactcttctcaagagtactatctatccgatgtgggactaaa 40122038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 43383996 - 43384045
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaa 61  Q
    ||||||||||||||||| | ||| ||||||| ||||||||||||||||||    
T  43383996 ctctttataaactctttgcaagactcctatctatccgatgtgggactaaa 43384045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 19843762 - 19843687
Alignment:
Q  11 tctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    ||||||||||||||||| || ||| ||||||| ||| ||| |||||||||||  ||  |||||||||||||||||||    
T  19843762 tctctttataaactcttctcaagaatcctatctatctgatttgggactaaat-cccttcgagtgttggccgctaaca 19843687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 36270747 - 36270823
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaacag 88  Q
    |||||||||||||| | || ||| ||||||| |||| ||||||||| ||||  |  |||||||||||||||||||||    
T  36270747 ctctttataaactcctgtcaagaatcctatctatccaatgtgggacaaaatcccacccgagtgttggccgctaacag 36270823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 37530973 - 37531052
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat--aaccaccgagtgttggccgctaacagg 89  Q
    |||||||||||||||| || ||| ||||||| |||||| ||||||||||||  | |||  |||||||||| |||||||||    
T  37530973 ctctttataaactcttctcaagaatcctatctatccgacgtgggactaaatccacccagtgagtgttggctgctaacagg 37531052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 1663658 - 1663705
Alignment:
Q  15 tttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    ||||||||||||| || ||||| ||||| |||||||||||||||||||    
T  1663658 tttataaactcttctcaagagtgctatctatccgatgtgggactaaat 1663705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 20296317 - 20296243
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| |||| || |||| ||||||||||||||  ||  |||||||||||||||||||    
T  20296317 ctctttataaactcttctcaagaatcctctctatccaatgtgggactaaat-cccctcgagtgttggccgctaaca 20296243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 22206328 - 22206402
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    ||||||||||||| || || ||| ||||||| || ||||||||||||||||  |||||||||| | ||||||||||    
T  22206328 ctctttataaacttttctcaagaatcctatctattcgatgtgggactaaat-cccaccgagtgattgccgctaaca 22206402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 22228411 - 22228337
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    ||||||||||||| || || ||| ||||||| || ||||||||||||||||  |||||||||| | ||||||||||    
T  22228411 ctctttataaacttttctcaagaatcctatctattcgatgtgggactaaat-cccaccgagtgattgccgctaaca 22228337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 22686783 - 22686857
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    ||||||||||||||||||| ||| ||||||  ||||||||||||| |||||  ||  ||||||||| |||||||||    
T  22686783 ctctttataaactcttttcaagaatcctatttatccgatgtgggattaaat-cccctcgagtgttgaccgctaaca 22686857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 1661241 - 1661291
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || |||||  |||| |||||||||||||||||||    
T  1661241 ctctttataaactcttctcaagagttttatctatccgatgtgggactaaat 1661291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 41670637 - 41670587
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| || ||||||||||||||||    
T  41670637 ctctttataaactcttctcaagagtactatctattcgatgtgggactaaat 41670587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 43167943 - 43167993
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| ||||||| |||||||||||    
T  43167943 ctctttataaactcttctcaagagtgctatctatccgatttgggactaaat 43167993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 43288318 - 43288268
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||||||||| | ||||||||||| |||||    
T  43288318 ctctttataaactcttatcaagagtcctatctaaccgatgtgggagtaaat 43288268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 48114051 - 48114005
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggact 58  Q
    |||||||||||||||| || |||||| |||| |||||||||||||||    
T  48114051 ctctttataaactcttatcaagagtcttatctatccgatgtgggact 48114005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 21557069 - 21557024
Alignment:
Q  13 tctttataaactcttttcgagagtcctatcaatccgatgtgggact 58  Q
    ||||||||||||||| || ||||| ||||| |||||||||||||||    
T  21557069 tctttataaactcttatcaagagttctatctatccgatgtgggact 21557024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 27729554 - 27729598
Alignment:
Q  38 ctatcaatccgatgtgggactaaataaccaccgagtgttggccgct 83  Q
    ||||| |||||||||||||||||||  |||||||||||||||||||    
T  27729554 ctatctatccgatgtgggactaaat-cccaccgagtgttggccgct 27729598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 47856041 - 47856085
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtggga 56  Q
    |||||||||||||||| || |||||| |||| |||||||||||||    
T  47856041 ctctttataaactcttatcaagagtcttatctatccgatgtggga 47856085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 22196603 - 22196677
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || |||||| |||| |||||||||||||||||||  |||||||||||||||||||||||    
T  22196603 ctctttataaactcttctcaagagtcatatctatccgatgtgggactaaat-cccaccgagtgttggccgctaaca 22196677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 22196376 - 22196448
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaa 85  Q
    |||||||||||||||| || ||||| ||||| |||||||||||||||||||  |||||||||||||||||||||    
T  22196376 ctctttataaactcttctcaagagtactatctatccgatgtgggactaaat-cccaccgagtgttggccgctaa 22196448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 30329890 - 30329815
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| ||||||| |||||||||||||||||||  |  ||||| ||||||||||||||    
T  30329890 ctctttataaactcttctcaagaatcctatctatccgatgtgggactaaatccctcccgagagttggccgctaaca 30329815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 32395364 - 32395439
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| ||||||| |||||||||||||||||||  |  ||||| ||||||||||||||    
T  32395364 ctctttataaactcttctcaagattcctatctatccgatgtgggactaaatcccacccgagagttggccgctaaca 32395439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 38131818 - 38131768
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||||||||| |||||||||||||||||||    
T  38131818 ctctttataaactcttctcaagagtcctatctatccgatgtgggactaaat 38131768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 14769883 - 14769956
Alignment:
Q  13 tctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccac-cgagtgttggccgctaaca 87  Q
    ||||||||||||||| || ||| ||||||| |||||||||| ||||||||  |||| |||||||||||||||||||    
T  14769883 tctttataaactcttctcaagaatcctatctatccgatgtgagactaaat--ccactcgagtgttggccgctaaca 14769956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 83860 - 83935
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    ||||||||||||| || || ||| ||||||  |||||||||||||||||||  |  ||||||||||||||||||||    
T  83860 ctctttataaacttttctcaagaatcctatatatccgatgtgggactaaatcccacccgagtgttggccgctaaca 83935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 84084 - 84159
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| ||||||  |||||||||||||||||||  |  ||||||||||||| ||||||    
T  84084 ctctttataaactcttctcaagaatcctatatatccgatgtgggactaaatcccacccgagtgttggccactaaca 84159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 873746 - 873796
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||| ||||||||||| || ||||||||||| |||||||||||||||||||    
T  873746 ctctctataaactcttctcaagagtcctatctatccgatgtgggactaaat 873796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 1028143 - 1028193
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| |||||||||||||||||||    
T  1028143 ctctttataaactcttctcaagagtgctatctatccgatgtgggactaaat 1028193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 37995684 - 37995734
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| |||||||||||||||||||    
T  37995684 ctctttataaactcttctcaagagtgctatctatccgatgtgggactaaat 37995734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 27760128 - 27760079
Alignment:
Q  13 tctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||| |||||||| || ||||||||||| |||||||||||||||||||    
T  27760128 tctttagaaactcttctcaagagtcctatctatccgatgtgggactaaat 27760079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 33040331 - 33040264
Alignment:
Q  20 aaactcttttcgagagtcctatcaatccgatgtgggactaaataaccac-cgagtgttggccgctaaca 87  Q
    |||||||| || ||| ||||||| |||||||||||||||||||  |||| |||||||||||||||||||    
T  33040331 aaactcttctcaagaatcctatctatccgatgtgggactaaat-cccacgcgagtgttggccgctaaca 33040264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 19439914 - 19439840
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    ||||||||||| |||| || ||| ||||||| ||| |||||||||||||||  ||  |||||||||||||||||||    
T  19439914 ctctttataaattcttctcaagaatcctatctatctgatgtgggactaaat-cccctcgagtgttggccgctaaca 19439840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 29396393 - 29396468
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    ||||||||||||| || || ||| ||||||| ||| |||||||||||||||  |  ||||| ||||||||||||||    
T  29396393 ctctttataaacttttctcaagattcctatctatctgatgtgggactaaatcccacccgagagttggccgctaaca 29396468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 13843751 - 13843701
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| ||| |||||||||||||||    
T  13843751 ctctttataaactcttctcaagagtactatctatctgatgtgggactaaat 13843701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 13844067 - 13844017
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| ||| |||||||||||||||    
T  13844067 ctctttataaactcttctcaagagtactatctatcagatgtgggactaaat 13844017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 29432466 - 29432416
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||||||||| | || ||||||||||||||    
T  29432466 ctctttataaactcttatcaagagtcctatctaaccaatgtgggactaaat 29432416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 30588111 - 30588061
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| | |||||||||||||||||    
T  30588111 ctctttataaactcttatcaagagttctatctaaccgatgtgggactaaat 30588061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 33040518 - 33040449
Alignment:
Q  18 ataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccac-cgagtgttggccgctaaca 87  Q
    |||||||||| || ||| ||||||| ||| |||||||||||||||  |||| |||||||||||||||||||    
T  33040518 ataaactcttctcaagaatcctatctatctgatgtgggactaaat-cccacgcgagtgttggccgctaaca 33040449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 35527038 - 35527084
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggact 58  Q
    |||||||||||||||| || |||||| |||| |||||||||||||||    
T  35527038 ctctttataaactcttctcaagagtcttatctatccgatgtgggact 35527084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 38376785 - 38376739
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggact 58  Q
    |||||||||||||||| || |||||| |||| |||||||||||||||    
T  38376785 ctctttataaactcttctcaagagtcttatctatccgatgtgggact 38376739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 43490306 - 43490352
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggact 58  Q
    |||||||||||||||| || |||||| |||| |||||||||||||||    
T  43490306 ctctttataaactcttctcaagagtcttatctatccgatgtgggact 43490352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 3762960 - 3762915
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggac 57  Q
    |||||||||||||||| || |||||| |||| ||||||||||||||    
T  3762960 ctctttataaactcttctcaagagtcttatctatccgatgtgggac 3762915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 28009848 - 28009897
Alignment:
Q  13 tctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    ||||||||||||||| || ||||| ||||| ||| |||||||||||||||    
T  28009848 tctttataaactcttctcaagagttctatctatctgatgtgggactaaat 28009897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 24792320 - 24792392
Alignment:
Q  16 ttataaactcttttcgagagtcctatcaatccgatgtgggactaaataac-caccgagtgttggccgctaaca 87  Q
    |||||||||||| || ||| ||||||| ||||||| |||||||||||  | | ||||| ||||||||||||||    
T  24792320 ttataaactcttctcaagattcctatctatccgatatgggactaaatctcaccccgagagttggccgctaaca 24792392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 39668467 - 39668532
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggc 79  Q
    ||||||||||| |||| || ||| || |||| |||||||||||||||||||  |||| ||||||||||    
T  39668467 ctctttataaattcttctcaagaatcatatctatccgatgtgggactaaat--ccactgagtgttggc 39668532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 45443273 - 45443200
Alignment:
Q  13 tctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    ||||||||||||||| || ||| ||||||| |||||||||||||||||||  |||||||||||||||||||||||    
T  45443273 tctttataaactcttctcaagaatcctatctatccgatgtgggactaaat-cccaccgagtgttggccgctaaca 45443200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 12287902 - 12287827
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaacag 88  Q
    |||||||||| |||||||| ||| ||||||| |||||||||||||||||||  |||||||||||||||| |||||||    
T  12287902 ctctttataacctcttttcaagaatcctatctatccgatgtgggactaaat-cccaccgagtgttggccactaacag 12287827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 17295032 - 17294957
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| ||||||| |||||||||||||||||||  |  ||||||||||||||||||||    
T  17295032 ctctttataaactcttctcaagaatcctatctatccgatgtgggactaaatcccacccgagtgttggccgctaaca 17294957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 18585092 - 18585017
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaacag 88  Q
    ||||||||||| |||| || ||| ||||||| |||||||||||||||||||  ||||||||||||||| ||||||||    
T  18585092 ctctttataaaatcttctcaagaatcctatctatccgatgtgggactaaat-cccaccgagtgttggctgctaacag 18585017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 33562177 - 33562252
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataacca-ccgagtgttggccgctaaca 87  Q
    |||||||||| |||||||| ||| ||||||| |||||||||||||||||| | ||| ||||||||||||||||||||    
T  33562177 ctctttataacctcttttcaagaatcctatctatccgatgtgggactaaa-acccacccgagtgttggccgctaaca 33562252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 29228729 - 29228654
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| ||||||| |||||||||||||||||||  |  ||||| ||||||||||||||    
T  29228729 ctctttataaactcttctcaagattcctatctatccgatgtgggactaaatcccacccgagagttggccgctaaca 29228654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 40521543 - 40521617
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| || |||| ||||||||||||||||||| |||  |||||||||||||||||||    
T  40521543 ctctttataaactcttctcaagaatcttatctatccgatgtgggactaaatcacc-tcgagtgttggccgctaaca 40521617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 45858709 - 45858635
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| ||||||| |||||||||||||||||||  |||  ||||||||||||||||||    
T  45858709 ctctttataaactcttctcaagaatcctatctatccgatgtgggactaaatcccca-tgagtgttggccgctaaca 45858635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 2697381 - 2697431
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||||||||| |||||||||||||||||||    
T  2697381 ctctttataaactcttctcaagagtcctatctatccgatgtgggactaaat 2697431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 4022175 - 4022225
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||||||||| |||||||||||||||||||    
T  4022175 ctctttataaactcttctcaagagtcctatctatccgatgtgggactaaat 4022225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 28509437 - 28509506
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat--aaccaccgagtgttggc 79  Q
    |||||||||||||||| || ||| ||||||| |||||||||||||||||||  | |||||||||||||||    
T  28509437 ctctttataaactcttctcaagaatcctatctatccgatgtgggactaaatccacccaccgagtgttggc 28509506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 4187567 - 4187639
Alignment:
Q  16 ttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaacag 88  Q
    |||||||||||| || ||| ||||||| |||||||||||||||||||  |  ||||| |||||||||||||||    
T  4187567 ttataaactcttctcaagattcctatctatccgatgtgggactaaatcccacccgagagttggccgctaacag 4187639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 29228502 - 29228426
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaacag 88  Q
    |||||||||||||||| || ||| ||||||| |||||||||||| ||||||  |  ||||| |||||||||||||||    
T  29228502 ctctttataaactcttctcaagattcctatctatccgatgtgggtctaaatcccacccgagagttggccgctaacag 29228426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 31411613 - 31411685
Alignment:
Q  15 tttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| ||| ||||||| ||| |||||||||||||||  |  ||||||||||||| ||||||    
T  31411613 tttataaactcttttcaagaatcctatctatctgatgtgggactaaatcccacccgagtgttggccactaaca 31411685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 51722303 - 51722232
Alignment:
Q  16 ttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||| || ||| ||||||| |||||||||||||||||||  |  |||||||||||| |||||||    
T  51722303 ttataaactcttctcaagaatcctatctatccgatgtgggactaaatcccacccgagtgttggctgctaaca 51722232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 17419841 - 17419791
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| |||||||||||||||||||    
T  17419841 ctctttataaactcttctcaagagtgctatctatccgatgtgggactaaat 17419791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 20208137 - 20208196
Alignment:
Q  17 tataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttgg 78  Q
    |||||||||||||| ||| || |||| |||||||||||||||||||  ||||||||||||||    
T  20208137 tataaactcttttcaagaatcatatctatccgatgtgggactaaat--ccaccgagtgttgg 20208196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 20208436 - 20208495
Alignment:
Q  17 tataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttgg 78  Q
    |||||||||||||| ||| || |||| |||||||||||||||||||  ||||||||||||||    
T  20208436 tataaactcttttcaagaatcatatctatccgatgtgggactaaat--ccaccgagtgttgg 20208495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 40642826 - 40642876
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||| ||||||| |||||||||||||||||||    
T  40642826 ctctttataaactcttctcaagaatcctatctatccgatgtgggactaaat 40642876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 8520144 - 8520193
Alignment:
Q  13 tctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    ||||||||||||||| || ||||| ||||| |||||||||||||||||||    
T  8520144 tctttataaactcttctcaagagtgctatctatccgatgtgggactaaat 8520193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 4187336 - 4187407
Alignment:
Q  16 ttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccac-cgagtgttggccgctaaca 87  Q
    |||||||||||| || ||| ||||||| |||||||||||||||||||  |||| |||| ||||||||||||||    
T  4187336 ttataaactcttctcaagattcctatctatccgatgtgggactaaat-cccactcgagagttggccgctaaca 4187407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 17294897 - 17294846
Alignment:
Q  36 tcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    ||||||| |||||||||||||||||||  |  ||||||||||||||||||||    
T  17294897 tcctatctatccgatgtgggactaaatcccacccgagtgttggccgctaaca 17294846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 29383675 - 29383747
Alignment:
Q  14 ctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataacca-ccgagtgttggccgctaaca 87  Q
    |||||||||||||| || ||  || |||| |||||||||||||||||||  ||| ||||||||||||||||||||    
T  29383675 ctttataaactcttctcaagtatcttatctatccgatgtgggactaaat--ccacccgagtgttggccgctaaca 29383747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 30604510 - 30604585
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    ||||||||||||| || || ||| ||||||| |||||||||||||||||||  |  ||||| |||| |||||||||    
T  30604510 ctctttataaactattctcaagattcctatctatccgatgtgggactaaatcccacccgagagttgaccgctaaca 30604585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 19937093 - 19937143
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||| | ||||| |||||||||||||||||||    
T  19937093 ctctttataaactcttctcaagaattctatctatccgatgtgggactaaat 19937143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 31305765 - 31305715
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| ||| |||||||||||||||    
T  31305765 ctctttataaactcttctcaagagtgctatctatcggatgtgggactaaat 31305715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 38474337 - 38474287
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||| ||||||| ||||||||| |||||||||    
T  38474337 ctctttataaactcttgtcaagaatcctatctatccgatgtaggactaaat 38474287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 39649134 - 39649180
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggact 58  Q
    |||||||||||||||| || |||||| |||| |||||||||||||||    
T  39649134 ctctttataaactcttctcaagagtcttatctatccgatgtgggact 39649180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 40664264 - 40664214
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||||||||| | |||||||| ||||||||    
T  40664264 ctctttataaactcttatcaagagtcctatctaaccgatgtgagactaaat 40664214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 4506090 - 4506165
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaacag 88  Q
    |||||||||||||||| || ||| ||||||| |||||||||||||||||||  ||||||||||||||| ||||||||    
T  4506090 ctctttataaactcttctcaagaatcctatctatccgatgtgggactaaat-cccaccgagtgttggcagctaacag 4506165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 10862108 - 10862182
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| ||||||| |||||||||||||||||||  ||  |||||||||||||||||||    
T  10862108 ctctttataaactcttctcaagaatcctatctatccgatgtgggactaaat-cccctcgagtgttggccgctaaca 10862182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 18901914 - 18901964
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    ||||||||||||||||||| |||||| |||| |||||||||||||||||||    
T  18901914 ctctttataaactcttttcaagagtcttatctatccgatgtgggactaaat 18901964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 32197257 - 32197182
Alignment:
Q  11 tctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||| ||||||||||| ||||||  ||  |||||||||||||||  ||| |||||||||||||||||||    
T  32197257 tctctttataaattcttttcgagaatcctatatataagatgtgggactaaat-cccatcgagtgttggccgctaaca 32197182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 39420751 - 39420675
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaacag 88  Q
    |||||||||||||||| || | | ||||||| |||||||||||||||||||  |  ||||| |||||||||||||||    
T  39420751 ctctttataaactcttctcaaaattcctatctatccgatgtgggactaaatcccacccgagagttggccgctaacag 39420675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 11349843 - 11349918
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || |||  |||||| |||||||||||||||||||  |  |||||||||||| |||||||    
T  11349843 ctctttataaactcttctcaagaaacctatctatccgatgtgggactaaatcccacccgagtgttggctgctaaca 11349918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 15962207 - 15962282
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    ||||||||||||| || || ||| ||||||| |||||||||||||||||||  |  ||||| ||||||||||||||    
T  15962207 ctctttataaactattctcaagattcctatctatccgatgtgggactaaatcccacccgagagttggccgctaaca 15962282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 32810926 - 32811001
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| ||||||| |||||||| ||||||||||  |  |||||||||||| |||||||    
T  32810926 ctctttataaactcttatcaagaatcctatctatccgatgcgggactaaatcccacccgagtgttggctgctaaca 32811001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 33532786 - 33532860
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| ||||||| |||||||||||||||||||  ||  |||||||||||| ||||||    
T  33532786 ctctttataaactcttctcaagaatcctatctatccgatgtgggactaaat-cccctcgagtgttggccactaaca 33532860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 936866 - 936792
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaac 86  Q
    |||||||||||||||| || ||| ||||||| |||||||||| ||||||||  |  ||||| |||||||||||||    
T  936866 ctctttataaactcttctcaagattcctatctatccgatgtgagactaaatcccacccgagagttggccgctaac 936792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 3977053 - 3977103
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| |||||||||||||||||||    
T  3977053 ctctttataaactcttctcaagagtactatctatccgatgtgggactaaat 3977103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 7877898 - 7877848
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| |||||||| ||||| ||||||||| |||||||||    
T  7877898 ctctttataaactcttctcgagagtgctatctatccgatgtaggactaaat 7877848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 43169296 - 43169246
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| |||||||||||||||||||    
T  43169296 ctctttataaactcttctcaagagtactatctatccgatgtgggactaaat 43169246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 30166130 - 30166179
Alignment:
Q  13 tctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    ||||||||||||||| || ||||| ||||| |||||||||||||||||||    
T  30166130 tctttataaactcttctcaagagtgctatctatccgatgtgggactaaat 30166179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 4342308 - 4342382
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||| ||||||  || ||| | ||||| |||||||||||||||||||  |||| ||||||||||||||||||    
T  4342308 ctctttattaactctcctcaagaattctatctatccgatgtgggactaaat-cccactgagtgttggccgctaaca 4342382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 11350237 - 11350312
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || |||  |||||| ||||||| |||||||||||  |  |||||||||||| |||||||    
T  11350237 ctctttataaactcttctcaagaaacctatctatccgatatgggactaaatcccacccgagtgttggctgctaaca 11350312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 17727459 - 17727412
Alignment:
Q  11 tctctttataaactcttttcgagagtcctatcaatccgatgtgggact 58  Q
    ||||||||||||||||| || |||||| |||| |||||||||||||||    
T  17727459 tctctttataaactcttctcaagagtcttatctatccgatgtgggact 17727412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 26847291 - 26847338
Alignment:
Q  11 tctctttataaactcttttcgagagtcctatcaatccgatgtgggact 58  Q
    ||||||||||||||||| || ||||||||||| |||| ||||||||||    
T  26847291 tctctttataaactcttatcaagagtcctatctatccaatgtgggact 26847338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 28193625 - 28193699
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    ||||||||||| |||| || ||| ||||||| ||| |||||||||||||||  ||  |||||||||||||||||||    
T  28193625 ctctttataaaatcttctcaagaatcctatctatctgatgtgggactaaat-cccctcgagtgttggccgctaaca 28193699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 883651 - 883697
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggact 58  Q
    |||||||||||||||| || |||||| |||| |||||||||||||||    
T  883651 ctctttataaactcttctcaagagtcttatctatccgatgtgggact 883697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 3976209 - 3976255
Alignment:
Q  16 ttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||| || ||||| ||||| |||||||||||||||||||    
T  3976209 ttataaactcttctcaagagtactatctatccgatgtgggactaaat 3976255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 6183416 - 6183466
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| ||||||||||||| |||||    
T  6183416 ctctttataaactcttctcaagagtactatctatccgatgtgggattaaat 6183466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 6986466 - 6986512
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggact 58  Q
    |||||||||||||||| || |||||| |||| |||||||||||||||    
T  6986466 ctctttataaactcttctcaagagtcttatctatccgatgtgggact 6986512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 11969106 - 11969056
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| |||||| ||||||||||||    
T  11969106 ctctttataaactcttctcaagagtactatctatccgacgtgggactaaat 11969056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 12419892 - 12419846
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggact 58  Q
    |||||||||||||||| || |||||| |||| |||||||||||||||    
T  12419892 ctctttataaactcttctcaagagtcttatctatccgatgtgggact 12419846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 12431952 - 12431906
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggact 58  Q
    |||||||||||||||| || |||||| |||| |||||||||||||||    
T  12431952 ctctttataaactcttctcaagagtcttatctatccgatgtgggact 12431906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 21213935 - 21213985
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| |||| ||||||||||||||    
T  21213935 ctctttataaactcttctcaagagtactatctatccaatgtgggactaaat 21213985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 25441750 - 25441700
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| ||| |||||||||||||||    
T  25441750 ctctttataaactcttctcaagagtactatctatctgatgtgggactaaat 25441700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 43195838 - 43195788
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| ||| |||||||||||||||    
T  43195838 ctctttataaactcttctcaagagtactatctatctgatgtgggactaaat 43195788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 27545166 - 27545211
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggac 57  Q
    |||||||||||||||| || |||||| |||| ||||||||||||||    
T  27545166 ctctttataaactcttctcaagagtcttatctatccgatgtgggac 27545211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 43688472 - 43688521
Alignment:
Q  13 tctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    ||||||||||||||| || ||||||||||| |||||||||| || |||||    
T  43688472 tctttataaactcttctcaagagtcctatctatccgatgtgagattaaat 43688521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 14280334 - 14280259
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccacc-gagtgttggccgctaaca 87  Q
    |||||||||||||||| ||  || ||||||| |||| ||||||||||||||  ||||| |||||||||| |||||||    
T  14280334 ctctttataaactcttctcatgaatcctatctatccaatgtgggactaaat-cccacctgagtgttggctgctaaca 14280259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 28193388 - 28193459
Alignment:
Q  15 tttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    ||||||||||||| || ||| ||||||| |||||||||| ||||||||  ||  ||||||||||||| |||||    
T  28193388 tttataaactcttctcaagaatcctatctatccgatgtgagactaaat-cccctcgagtgttggccgataaca 28193459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 15711550 - 15711476
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| ||||||| |||||||||||||||||||  ||||||||||||||| |||||||    
T  15711550 ctctttataaactcttctcaagaatcctatctatccgatgtgggactaaat-cccaccgagtgttggctgctaaca 15711476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 38287787 - 38287861
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| ||||||| |||||||||||||||||||  |||||||||||||||| ||||||    
T  38287787 ctctttataaactcttatcaagaatcctatctatccgatgtgggactaaat-cccaccgagtgttggcccctaaca 38287861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 35908733 - 35908657
Alignment:
Q  11 tctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaacag 88  Q
    ||||||||||||||||| || ||  ||||||| | |||||||||||||||||  ||||||||||||||||||||||||    
T  35908733 tctctttataaactcttctcaagtatcctatctacccgatgtgggactaaat-cccaccgagtgttggccgctaacag 35908657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 18464125 - 18464049
Alignment:
Q  11 tctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    ||||||||||||||||| || ||| ||||||| ||| |||||||||||||||  |  ||||||||||||||||||||    
T  18464125 tctctttataaactcttctcaagaatcctatctatctgatgtgggactaaatcccacccgagtgttggccgctaaca 18464049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 39587908 - 39587981
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| ||||||| ||| |||||||||||||||  |||| |||||||||| |||||||    
T  39587908 ctctttataaactcttctctagaatcctatccatctgatgtgggactaaat--ccactgagtgttggctgctaaca 39587981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 9596043 - 9596117
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    ||||||||||| | || || ||| ||||||| ||||||||||| |||||||  |||||||||||||||||||||||    
T  9596043 ctctttataaaatattctcaagaatcctatctatccgatgtggaactaaat-cccaccgagtgttggccgctaaca 9596117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 14019862 - 14019787
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || |||  |||||| |||||||||||||||||||  |  |||||||||||| |||||||    
T  14019862 ctctttataaactcttctcaagaaacctatctatccgatgtgggactaaatcccacccgagtgttggctgctaaca 14019787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 20232447 - 20232522
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| ||  ||| |||||||||||||||||||  |  ||||||||||||||||||||    
T  20232447 ctctttataaactcttctcaagaatctcatctatccgatgtgggactaaatcccacccgagtgttggccgctaaca 20232522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 18905910 - 18905860
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| |||||||||||||||||||    
T  18905910 ctctttataaactcttctcaagagtgctatctatccgatgtgggactaaat 18905860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 21085198 - 21085248
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| |||||||||||||||||||    
T  21085198 ctctttataaactcttctcaagagtgctatctatccgatgtgggactaaat 21085248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 34248131 - 34248081
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||||||||| | |||||||||||||||||    
T  34248131 ctctttataaactcttatcaagagtcctatctaaccgatgtgggactaaat 34248081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 17607264 - 17607338
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccac-cgagtgttggccgctaaca 87  Q
    ||||||||||||||||  | ||| ||||||| |||||||||| ||||||||  |||| |||||||||||||||||||    
T  17607264 ctctttataaactcttcacaagaatcctatctatccgatgtgagactaaat--ccactcgagtgttggccgctaaca 17607338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 9596268 - 9596343
Alignment:
Q  11 tctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    ||||||||||||||||| || ||| || |||| ||||||| || ||||||||  |||||||||||||||| ||||||    
T  9596268 tctctttataaactcttctcaagaatcttatctatccgatatgagactaaat-cccaccgagtgttggccactaaca 9596343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 5720917 - 5720963
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggact 58  Q
    |||||||||||||||| || |||||| |||| |||||||||||||||    
T  5720917 ctctttataaactcttctcaagagtcttatctatccgatgtgggact 5720963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 8276603 - 8276553
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||| ||||||| |||| ||||||||||||||    
T  8276603 ctctttataaactcttctcaagaatcctatctatccaatgtgggactaaat 8276553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 23027555 - 23027605
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| ||| |||||||||||||||    
T  23027555 ctctttataaactcttctcaagagttctatctatctgatgtgggactaaat 23027605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 34248413 - 34248363
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||||||||| | || ||||||||||||||    
T  34248413 ctctttataaactcttatcaagagtcctatctaaccaatgtgggactaaat 34248363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 43599365 - 43599319
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggact 58  Q
    |||||||||||||||| || |||||| |||| |||||||||||||||    
T  43599365 ctctttataaactcttctcaagagtcttatctatccgatgtgggact 43599319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 3183961 - 3184001
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgt 52  Q
    |||||||||||||||| || ||||||||||| |||||||||    
T  3183961 ctctttataaactcttctcaagagtcctatctatccgatgt 3184001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 33396361 - 33396285
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaacag 88  Q
    |||||||||||||||| || ||| ||||||| |||||||||||||||||||  |  || ||||||||||||||||||    
T  33396361 ctctttataaactcttctcaagaatcctatctatccgatgtgggactaaatcccaccctagtgttggccgctaacag 33396285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 26842774 - 26842699
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || |||  |||||| |||||||||||||||||||  |  |||||||||||| |||||||    
T  26842774 ctctttataaactcttctcaagaaacctatctatccgatgtgggactaaatcccacccgagtgttggctgctaaca 26842699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 8144071 - 8144021
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| |||||||||||||||||||    
T  8144071 ctctttataaactcttctcaagagtgctatctatccgatgtgggactaaat 8144021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 24055160 - 24055209
Alignment:
Q  13 tctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    ||||||||||||||| || ||||| ||||| |||||||||||||||||||    
T  24055160 tctttataaactcttctcaagagtgctatctatccgatgtgggactaaat 24055209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 25184058 - 25183981
Alignment:
Q  11 tctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaacag 88  Q
    ||||||||||||||||| || ||| || |||| |||||||| ||||||||||  |  |||||||||||| ||||||||    
T  25184058 tctctttataaactcttatcaagaatcttatctatccgatgcgggactaaatcccacccgagtgttggctgctaacag 25183981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 1744892 - 1744940
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaa 60  Q
    ||||||||||||||||||| ||||| ||||| |||| ||||||||||||    
T  1744892 ctctttataaactcttttcaagagtactatctatccaatgtgggactaa 1744940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 12134533 - 12134581
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaa 60  Q
    |||||||||||||||| || ||||| ||||| |||||||||||||||||    
T  12134533 ctctttataaactcttctcaagagtgctatctatccgatgtgggactaa 12134581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 30539287 - 30539239
Alignment:
Q  14 ctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||| || |||||| |||| |||||||||||||||||||    
T  30539287 ctttataaactcttatcaagagtcttatctatccgatgtgggactaaat 30539239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 19753653 - 19753704
Alignment:
Q  11 tctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    ||||||||||||||||| || ||||||||||| || | ||||||||||||||    
T  19753653 tctctttataaactcttctcaagagtcctatctataccatgtgggactaaat 19753704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 21043830 - 21043881
Alignment:
Q  11 tctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    ||||||||||||||||| || ||||| ||||| ||||||| |||||||||||    
T  21043830 tctctttataaactcttctcaagagtgctatctatccgatatgggactaaat 21043881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 33396579 - 33396505
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || | | ||||||| ||||||||| |||||||||  |  ||||||||||||||||||||    
T  33396579 ctctttataaactcttctcaaaaatcctatctatccgatgt-ggactaaatcccacccgagtgttggccgctaaca 33396505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 10418388 - 10418438
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||  || ||||| ||||| |||||||||||||||||||    
T  10418388 ctctttataaactctcatcaagagtgctatctatccgatgtgggactaaat 10418438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 25184264 - 25184214
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||| ||||||| |||||||| ||||||||||    
T  25184264 ctctttataaactcttatcaagaatcctatctatccgatgcgggactaaat 25184214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 26339892 - 26339942
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||| || |||| |||||||||||||||||||    
T  26339892 ctctttataaactcttctcaagattcttatctatccgatgtgggactaaat 26339942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 31924 - 31973
Alignment:
Q  13 tctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    ||||||||||||||| || |||||| |||| ||||||||| |||||||||    
T  31924 tctttataaactcttatcaagagtcttatctatccgatgttggactaaat 31973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 33912097 - 33912022
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaacag 88  Q
    |||||||||||||||| || ||  ||||||| | |||||||||||||||||  ||||||||||||||||||||||||    
T  33912097 ctctttataaactcttctcaagtatcctatctacccgatgtgggactaaat-cccaccgagtgttggccgctaacag 33912022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 11290223 - 11290148
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| ||||||| |||||||||||||||||||  |  ||||| ||||||||||||||    
T  11290223 ctctttataaactcttctcaagattcctatctatccgatgtgggactaaatcccacccgagagttggccgctaaca 11290148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 51469535 - 51469485
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||||||||| |||||||||||||||||||    
T  51469535 ctctttataaactcttctcaagagtcctatctatccgatgtgggactaaat 51469485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 4026124 - 4026053
Alignment:
Q  15 tttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    ||||||||||||| || ||| ||||||| |||||||||||||||||||  |||| ||||||||||||| ||||    
T  4026124 tttataaactcttctcaagaatcctatctatccgatgtgggactaaat-cccactgagtgttggccgccaaca 4026053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 37097781 - 37097856
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaacag 88  Q
    ||||||||||| |||| || ||| ||||||| ||| |||||||||||||||  |||||||||||||| |||||||||    
T  37097781 ctctttataaaatcttctcaagaatcctatctatctgatgtgggactaaat-cccaccgagtgttggtcgctaacag 37097856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 46528973 - 46529047
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| ||| ||| |||||||||| ||||||||  ||||||||||||||| |||||||    
T  46528973 ctctttataaactcttctcaagaatccaatctatccgatgtgagactaaat-cccaccgagtgttggctgctaaca 46529047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 50868063 - 50868138
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| ||||||| |||||||||||||||||||  |  ||||| ||||| ||||||||    
T  50868063 ctctttataaactcttctcaagattcctatctatccgatgtgggactaaatcccacccgagagttggtcgctaaca 50868138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 15665207 - 15665157
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||| ||||||||||| || ||||||||||| |||||||||||||||||||    
T  15665207 ctctatataaactcttctcaagagtcctatctatccgatgtgggactaaat 15665157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 22867138 - 22867088
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||||||||| |||||| ||||||||||||    
T  22867138 ctctttataaactcttctcaagagtcctatctatccgacgtgggactaaat 22867088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 29669413 - 29669463
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| |||||||||||||||||||    
T  29669413 ctctttataaactcttctcaagagtgctatctatccgatgtgggactaaat 29669463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 48843067 - 48843117
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    ||||||||||||||||||| ||||||||||| ||| |||| ||||||||||    
T  48843067 ctctttataaactcttttcaagagtcctatctatctgatgcgggactaaat 48843117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 51470533 - 51470487
Alignment:
Q  16 ttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||| || ||||||||||| |||||||||||||||||||    
T  51470533 ttataaactcttctcaagagtcctatctatccgatgtgggactaaat 51470487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 53740236 - 53740186
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| |||||||||||||||||||    
T  53740236 ctctttataaactcttctcaagagtactatctatccgatgtgggactaaat 53740186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 37288922 - 37288994
Alignment:
Q  15 tttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaacag 88  Q
    ||||||||||||| || ||| || |||| |||||||||||||||||||  ||||||| ||||||| ||||||||    
T  37288922 tttataaactcttctcaagaatcatatctatccgatgtgggactaaat-cccaccgattgttggcagctaacag 37288994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 26941915 - 26941841
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||| ||||||||||| || ||  | ||||| || ||||||||||||||||  |||||||||||||||||||||||    
T  26941915 ctctatataaactcttctcaaggatactatctattcgatgtgggactaaatc-ccaccgagtgttggccgctaaca 26941841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 52810675 - 52810749
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| || |||| ||||||||| |||||||||  |||  ||||||||||||||||||    
T  52810675 ctctttataaactcttctcaagaatcttatctatccgatgtaggactaaat-tccattgagtgttggccgctaaca 52810749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 52810934 - 52810976
Alignment:
Q  44 atccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||||||  |||||||||||||||||||||||    
T  52810934 atccgatgtgggactaaatc-ccaccgagtgttggccgctaaca 52810976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 990601 - 990551
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || |||||  |||| |||||||||||||||||||    
T  990601 ctctttataaactcttctcaagagtgttatctatccgatgtgggactaaat 990551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 28497264 - 28497310
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggact 58  Q
    |||||||||||||||| || |||||| |||| |||||||||||||||    
T  28497264 ctctttataaactcttatcaagagtcttatctatccgatgtgggact 28497310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 29669728 - 29669778
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| ||| |||||||||||||||    
T  29669728 ctctttataaactcttctcaagagtgctatctatctgatgtgggactaaat 29669778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 36558516 - 36558566
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || | |||| |||| |||||||||||||||||||    
T  36558516 ctctttataaactcttctcaaaagtcatatctatccgatgtgggactaaat 36558566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 43943727 - 43943681
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggact 58  Q
    |||||||||||||||| || |||||| |||| |||||||||||||||    
T  43943727 ctctttataaactcttctcaagagtcttatctatccgatgtgggact 43943681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 43972409 - 43972359
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||| |||| || || ||||||||||| |||||||||||||||||||    
T  43972409 ctctttatcaacttttctcaagagtcctatctatccgatgtgggactaaat 43972359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 45426986 - 45427036
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| |||||||||||| ||||||    
T  45426986 ctctttataaactcttctcaagagtactatctatccgatgtggggctaaat 45427036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 50858382 - 50858332
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| ||| |||||||||||||||    
T  50858382 ctctttataaactcttctcaagagtactatctatctgatgtgggactaaat 50858332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 53739920 - 53739870
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || ||||| ||||| ||||||| |||||||||||    
T  53739920 ctctttataaactcttctcaagagtactatctatccgatatgggactaaat 53739870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 56509663 - 56509613
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||||||||| || || |||||||| ||||||||| |||||||||    
T  56509663 ctctttataaactcttctcaagggtcctatctatccgatgtaggactaaat 56509613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 13254436 - 13254387
Alignment:
Q  13 tctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    ||||||||||||||| || | ||||||||| |||| ||||||||||||||    
T  13254436 tctttataaactcttctcaatagtcctatctatccaatgtgggactaaat 13254387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 50858065 - 50858016
Alignment:
Q  13 tctttataaactcttttcgagagtcctatcaatccgatgtgggactaaat 62  Q
    |||||||||| |||| || ||||| ||||| |||||||||||||||||||    
T  50858065 tctttataaaatcttctcaagagtactatctatccgatgtgggactaaat 50858016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 50307328 - 50307284
Alignment:
Q  14 ctttataaactcttttcgagagtcctatcaatccgatgtgggact 58  Q
    |||||||||||||| || |||||| |||| |||||||||||||||    
T  50307328 ctttataaactcttgtcaagagtcttatctatccgatgtgggact 50307284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 165838 - 165764
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggactaaataaccaccgagtgttggccgctaaca 87  Q
    |||||||||||||||| || ||| | ||||| ||||||||| |||||||||  ||  |||||||||||||||||||    
T  165838 ctctttataaactcttctcaagaattctatctatccgatgtaggactaaat-cccctcgagtgttggccgctaaca 165764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 76906 - 76860
Alignment:
Q  12 ctctttataaactcttttcgagagtcctatcaatccgatgtgggact 58  Q
    |||||||||||||||| || |||||| |||| |||||||||||||||    
T  76906 ctctttataaactcttctcaagagtcttatctatccgatgtgggact 76860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 34703 - 34775
Alignment:
Q  16 ttataaactcttttcgagagtcctatcaatccgatgtgggactaaataac-caccgagtgttggccgctaaca 87  Q
    |||||||||||| || ||| ||||||| ||||||| |||||||||||  | | ||||| ||||||||||||||    
T  34703 ttataaactcttctcaagattcctatctatccgatatgggactaaatctcaccccgagagttggccgctaaca 34775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University