View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9020_low_7 (Length: 304)
Name: NF9020_low_7
Description: NF9020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9020_low_7 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 27645218 - 27645521
Alignment:
| Q |
1 |
acaatatgaaaggcatgccttcatcttgaagccacactttgctgtataatacatatgtttactaagcaacttcttttagggtcaaaattccgaatatatt |
100 |
Q |
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| T |
27645218 |
acaatgtgaaaggcatgccttcatcttgaagccacactttgctgtataatacatacgtttactaagcaacttcttttagggtcaaaattccgtatatatt |
27645317 |
T |
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| Q |
101 |
aataaaccagacggtatagtggaggaaaattgtaacagactttgtctacatcggtcaatggtgagcagcattttgagtgagcgatacaatcacacaacat |
200 |
Q |
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| T |
27645318 |
aataaaccagacggcatagtggaggaaaattgtaacagactttgtctacatcggtcaatggtgagcagcatttcgagtgagcgatacaatcacacaacat |
27645417 |
T |
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| Q |
201 |
ttaattaatcatgccaagccaaaaagttcaacatgaggctctttaattagcgaaatcatttcaagtcggtttctctaagagcaaacaaaggagatatgct |
300 |
Q |
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| T |
27645418 |
ttaattaatcatgccaagccaaaaagttcaacatgaggctctttaattagcgaaatcatttcaagtcggtttctctaagagcaaacaaaggagatatgct |
27645517 |
T |
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| Q |
301 |
tccc |
304 |
Q |
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|||| |
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| T |
27645518 |
tccc |
27645521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 27647432 - 27647652
Alignment:
| Q |
18 |
ccttcatcttgaagccacactttgctgtataa--taca-tatgtttactaagcaacttcttttagggtcaaaattccgaatatattaataaaccagacgg |
114 |
Q |
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| T |
27647432 |
ccttcatcttgaag--acactttgctgtataaattataatacgttcactaagcaacttcttttaggctcaaaattccatatatattaagaaaccagacgg |
27647529 |
T |
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| Q |
115 |
tatagtggaggaaaattgtaacagactttgtctacatcggtcaatggtgagcagcattttgagtgagcgatacaatcacacaacatttaattaatcatgc |
214 |
Q |
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| T |
27647530 |
catagtgcaggaaaattgtaacagactttgtctgcatcggtcaatggtgagcagcattctaagtgaacgatacaatcacacaaaattttattaattattc |
27647629 |
T |
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| Q |
215 |
caagccaaaaagttcaacatgag |
237 |
Q |
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| T |
27647630 |
caagcctaaaagttcaacatgag |
27647652 |
T |
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