View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9020_low_8 (Length: 295)
Name: NF9020_low_8
Description: NF9020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9020_low_8 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 42559220 - 42559494
Alignment:
| Q |
18 |
agttcatgttccatgatttgttgcaacggtgaaatagaaacagtgtcgnnnnnnnnnnnngcaagaatgttggaagtgacattgatgttgtgagactcga |
117 |
Q |
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| T |
42559220 |
agttcatgttccatgatttgttgcaacggtgaaatagaaacagtgtcgtttttgttttttgcaagaatgttggaagtgacattgatgttgtgagactcga |
42559319 |
T |
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| Q |
118 |
ttttgatgaaaggagtgtgagatgtaagaaaggagaaagtagtgtctgtggatgatgatgatgatgtgtggagttttgatctgaggataggatgggaatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42559320 |
ttttgatgaaaggagtgtgagatgtaagaaaggagaaagtagtgtctgtggatg---atgatgatgtgtggagttttgatctgaggataggatgggaatt |
42559416 |
T |
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| Q |
218 |
ttgtagtttgtggagtgaggtttgaaaacgggaaatatcaatgggttttgtgatgagtagtgataaaactgcaatgcc |
295 |
Q |
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| T |
42559417 |
ttgtagtttgtggagtgaggtttgaaaacgggaaatatcaatgggttttgtgatgagtagtgataaaactgcaatgcc |
42559494 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 25993977 - 25993941
Alignment:
| Q |
198 |
ctgaggataggatgggaattttgtagtttgtggagtg |
234 |
Q |
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| T |
25993977 |
ctgaggataggatgggaattttggagtttgtggagtg |
25993941 |
T |
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