View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9021_high_2 (Length: 555)
Name: NF9021_high_2
Description: NF9021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9021_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 523; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 4 - 538
Target Start/End: Original strand, 43036159 - 43036693
Alignment:
| Q |
4 |
ggagctccatgtggtgccatcaatattgtagggctcttatgaaaatgagtattgcaggttttcacaaatacagtaaggagtcttgtagcttgcttggaag |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43036159 |
ggagctccatgtggtgccatcaatattgtagggctcttatgaaaatgagtattgcaggttttcacaaatacagtaaggagtcttgtagcttgcttggaag |
43036258 |
T |
|
| Q |
104 |
cctgtctttatgtttcttgctagctgttttgatgttagccttagttctgtattttttattctcgcactcttttgatactactcaattttatccaaagctg |
203 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43036259 |
cctgtctttatgtttcttgctaactgttttgatgttagccttagttctgtattttttattctcgcactcttttgatactactcaattttatccaaagctg |
43036358 |
T |
|
| Q |
204 |
aaaagtagttgttgcataatcctttttacacacataaatcatggtctcaattttctttttgcaaaatagaatttgaattaataaggtacacaaaagtcaa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43036359 |
aaaagtagttgttgcataatcctttttacacacataaatcatggtctcaattttctttttgcaaaatagaatttgaattaatgaggtacacaaaagtcaa |
43036458 |
T |
|
| Q |
304 |
cagtagatatcacaagaagtgttaaagaacaaatacaacaaaagttccaacatcagttacattaccatattatgcactagtataccttcccctactaaac |
403 |
Q |
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| T |
43036459 |
cagtagatatcacaagaagtgttaaagaacaaatacaacaaaagttccaacatcagttacattaccatattatgcactagtataccttcccctactaaac |
43036558 |
T |
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| Q |
404 |
aacattggtctaaaaactcagataaattgtcttgtttccattccatgatgtaaagccataatttaataatgtcaattggtgaaggaatggatcttctaag |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43036559 |
aacattggtctaaaaactcagataaattgtcttgtttccattccatgatgtaaagccatagtttaataatgtcaattggtgaaggaatggatcttctaag |
43036658 |
T |
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| Q |
504 |
aaaggggaagactatgaaataatgtcacatacaat |
538 |
Q |
| |
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| T |
43036659 |
aaaggggaagactatgaaataatgtcacatacaat |
43036693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 209 - 340
Target Start/End: Original strand, 31919402 - 31919533
Alignment:
| Q |
209 |
tagttgttgcataatcctttttacacacataaatcatggtctcaattttctttttgcaaaatagaatttgaattaataaggtacacaaaagtcaacagta |
308 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||| |||| ||||| || |
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| T |
31919402 |
tagttattgcataatcctttttacacacataaatcatggtctcaattttctttttgcaaaagaaaatttggattaataaggtacagaaaaatcaaccata |
31919501 |
T |
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| Q |
309 |
gatatcacaagaagtgttaaagaacaaataca |
340 |
Q |
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|||||||||||| ||| ||||||||||||||| |
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| T |
31919502 |
gatatcacaagaggtgctaaagaacaaataca |
31919533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 33
Target Start/End: Original strand, 31919220 - 31919249
Alignment:
| Q |
4 |
ggagctccatgtggtgccatcaatattgta |
33 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
31919220 |
ggagctccatgtggtgccatcaatattgta |
31919249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 4 - 538
Target Start/End: Complemental strand, 740700 - 740166
Alignment:
| Q |
4 |
ggagctccatgtggtgccatcaatattgtagggctcttatgaaaatgagtattgcaggttttcacaaatacagtaaggagtcttgtagcttgcttggaag |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
740700 |
ggagctccatgtggtgccatcaatattgtagggctcttatgaaaatgagtattgcaggttttcacaaatacagtaaggagtcttgtagcttgcttggaag |
740601 |
T |
|
| Q |
104 |
cctgtctttatgtttcttgctagctgttttgatgttagccttagttctgtattttttattctcgcactcttttgatactactcaattttatccaaagctg |
203 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
740600 |
cctgtctttatgtttcttgctaactgttttgatgttagccttagttctgtattttttattctcgcactcttttgatactactcaattttatccaaagctg |
740501 |
T |
|
| Q |
204 |
aaaagtagttgttgcataatcctttttacacacataaatcatggtctcaattttctttttgcaaaatagaatttgaattaataaggtacacaaaagtcaa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
740500 |
aaaagtagttgttgcataatcctttttacacacataaatcatggtctcaattttctttttgcaaaatagaatttgaattaatgaggtacacaaaagtcaa |
740401 |
T |
|
| Q |
304 |
cagtagatatcacaagaagtgttaaagaacaaatacaacaaaagttccaacatcagttacattaccatattatgcactagtataccttcccctactaaac |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
740400 |
cagtagatatcacaagaagtgttaaagaacaaatacaacaaaagttccaacatcagttacattaccatattatgcactagtataccttcccctactaaac |
740301 |
T |
|
| Q |
404 |
aacattggtctaaaaactcagataaattgtcttgtttccattccatgatgtaaagccataatttaataatgtcaattggtgaaggaatggatcttctaag |
503 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
740300 |
aacattggtctaaaaactcagataaattgtcttgtttccattccatgatgtaaagccatattttaataatgtcaattggtgaaggaatggatcttctaag |
740201 |
T |
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| Q |
504 |
aaaggggaagactatgaaataatgtcacatacaat |
538 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
740200 |
aaaggggaagactatgaaataatgtcacatacaat |
740166 |
T |
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