View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9021_low_1 (Length: 1008)
Name: NF9021_low_1
Description: NF9021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9021_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 913; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 913; E-Value: 0
Query Start/End: Original strand, 3 - 991
Target Start/End: Original strand, 40944027 - 40945015
Alignment:
| Q |
3 |
atggttctgatgcttattctgcttgttttacagatttttgaatgctggaatatttggaaacggaactgagtcaagccacacacttccacacacagcaaca |
102 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40944027 |
atggttctgatgcttattctgcttgtttttcagatttttgaatgctggaatatttggaaaaggaagtgagtcaagccacacacttccacacacagcaaca |
40944126 |
T |
|
| Q |
103 |
agagctgccatgctagtgagaatcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctccttaacaacaacg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40944127 |
agagctgccatgctagtgagaatcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctccttaacaacaacg |
40944226 |
T |
|
| Q |
203 |
tcactccatgtttaccacttcgcggtacaatcacagcttcaggagatttggtccctctgtcatacattgctggtttactaactggaagacctaattccaa |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40944227 |
tcactccatgtttaccacttcgcggtacaatcacagcttcaggagatttggtccctctatcttacattgctggtttactaactggaagaccaaattccaa |
40944326 |
T |
|
| Q |
303 |
agctcatggaccctctggagaagtagttaatgcaaaagaagcttttcaattggctggaatcaatgctgagttctttgaattacaaccaaaagaaggcctt |
402 |
Q |
| |
|
|||||||||||| ||||||||| || |||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
40944327 |
agctcatggaccatctggagaaatacttaatgcaaaagaagcttttaaattggctggaatcaatgctgaattcttagaattacaaccaaaagaaggcctt |
40944426 |
T |
|
| Q |
403 |
gcacttgttaacggaacagctgttggttccggtttagcttctattgttctcttcgaggctaacattttggctgtgttgtctgaagttctatcagctattt |
502 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40944427 |
gcacttgttaacggaacagctgttggttccggtttagcttcaattgttctcttcgaggctaacattttggctgtgttgtctgaagttctatcagctattt |
40944526 |
T |
|
| Q |
503 |
ttgctgaagttatgcaagggaaacctgagtttaccgatcatttgacacacaagttgaaacaccaccctggtcaaattgaggctgctgctattatggaaca |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40944527 |
ttgctgaagttatgcaagggaaacctgagtttaccgatcatttgacacacaagttgaaacaccaccctggtcaaattgaggctgctgctattatggaaca |
40944626 |
T |
|
| Q |
603 |
cattttggatggaagtgcttatgtcaaagcagataaaaagttgcatgagatggatccattgcagaaaccaaaacaagatagatatgcgcttagaacttca |
702 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40944627 |
cattttggatggaagtgcttatgtcaaagcagataaaaagttgcatgagatggatccattgcagaaaccaaaacaagatagatatgcgcttagaacttca |
40944726 |
T |
|
| Q |
703 |
ccacaatggcttggtcctttggttgaagtgattagattctctaccaagtcaattgagagagagatcaactctgtcaatgacaaccctttgattgatgttt |
802 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
40944727 |
ccacaatggcttggtcctttggttgaagtgattagattctctaccaagtcaattgagagagagatcaactctgtcaacgacaaccccttgattgatgttt |
40944826 |
T |
|
| Q |
803 |
caagaaacaaagctttgcatggtggaaattttcaaggaacgcctattggagtatccatggataatacacgtttggctctcgcatcaattggcaaacttat |
902 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40944827 |
caagaaacaaagctttgcatggtggaaactttcaaggaacgcctattggagtatccatggataatacacgtttggctctcgcatcaattggcaaacttat |
40944926 |
T |
|
| Q |
903 |
ctttgctcaattctctgaacttgtcaatgatttttacaacaatggattgccttcaaatctttctgccagtagaaatcctagtttggatt |
991 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
40944927 |
gtttgctcaattctctgagcttgtcaatgatttttacaacaatggattgccttcaaatctttctgcgagtagaaatcctagtttggatt |
40945015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 824; E-Value: 0
Query Start/End: Original strand, 24 - 991
Target Start/End: Original strand, 40958013 - 40958980
Alignment:
| Q |
24 |
cttgttttacagatttttgaatgctggaatatttggaaacggaactgagtcaagccacacacttccacacacagcaacaagagctgccatgctagtgaga |
123 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||||| ||||| ||||| ||||||| |||||||| |||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
40958013 |
cttgttttccaggtttttgaatgcaggaatattcggaaatggaacagagtcaaatcacacactaccacacacggcaacaagagcagccatgctagtgaga |
40958112 |
T |
|
| Q |
124 |
atcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctccttaacaacaacgtcactccatgtttaccacttc |
223 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40958113 |
atcaacacactcctccaaggctattcaggaattagatttgaaatcttggaagccatcactaagctccttaacaacaacgtcactccatgtttaccacttc |
40958212 |
T |
|
| Q |
224 |
gcggtacaatcacagcttcaggagatttggtccctctgtcatacattgctggtttactaactggaagacctaattccaaagctcatggaccctctggaga |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
40958213 |
gcggtacaatcacagcttcaggagatttggtccctctatcttacattgctggtttactaacaggaagaccaaattcaaaagctcatggaccatctggaga |
40958312 |
T |
|
| Q |
324 |
agtagttaatgcaaaagaagcttttcaattggctggaatcaatgctgagttctttgaattacaaccaaaagaaggccttgcacttgttaacggaacagct |
423 |
Q |
| |
|
| || |||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40958313 |
aatacttaatgcaaaagaagcttttaaattggctggaatcaatgctgaattcttagaattacaaccaaaagaaggccttgcacttgttaacggaacagca |
40958412 |
T |
|
| Q |
424 |
gttggttccggtttagcttctattgttctcttcgaggctaacattttggctgtgttgtctgaagttctatcagctatttttgctgaagttatgcaaggga |
523 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40958413 |
gttggttcaggtttagcttcaattgttctcttagaggctaacattttggctgtgttgtctgaagttctatcagctatttttgctgaagttatgcaaggga |
40958512 |
T |
|
| Q |
524 |
aacctgagtttaccgatcatttgacacacaagttgaaacaccaccctggtcaaattgaggctgctgctattatggaacacattttggatggaagtgctta |
623 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40958513 |
aacctgagtttaccgatcatttgacacacaagttgaaacaccaccctggtcaaattgaggctgctgctattatggaacacattttggatggaagtgctta |
40958612 |
T |
|
| Q |
624 |
tgtcaaagcagataaaaagttgcatgagatggatccattgcagaaaccaaaacaagatagatatgcgcttagaacttcaccacaatggcttggtcctttg |
723 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40958613 |
tgtcaaagcagataaaaagttgcatgagatggatccattgcagaaaccaaaacaagatagatatgcgcttagaacttcaccacaatggcttggtcctttg |
40958712 |
T |
|
| Q |
724 |
gttgaagtgattagattctctaccaagtcaattgagagagagatcaactctgtcaatgacaaccctttgattgatgtttcaagaaacaaagctttgcatg |
823 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40958713 |
gttgaagtgattagattctctaccaagtcaattgagagagagatcaactctgtcaacgacaaccccttgattgatgtttcaagaaacaaagctttgcatg |
40958812 |
T |
|
| Q |
824 |
gtggaaattttcaaggaacgcctattggagtatccatggataatacacgtttggctctcgcatcaattggcaaacttatctttgctcaattctctgaact |
923 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
40958813 |
gtggaaaatttcaaggaacgcctattggagtatccatggataatacacgtttggctctcgcatcaattggcaaacttatgtttgctcaattctctgagct |
40958912 |
T |
|
| Q |
924 |
tgtcaatgatttttacaacaatggattgccttcaaatctttctgccagtagaaatcctagtttggatt |
991 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
40958913 |
tgtcaatgatttttacaacaatggattgccttcaaatctttctgcaagtagaaatcctagtttggatt |
40958980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 37 - 991
Target Start/End: Complemental strand, 28185358 - 28184404
Alignment:
| Q |
37 |
tttttgaatgctggaatatttggaaacggaactgagtcaagccacacacttccacacacagcaacaagagctgccatgctagtgagaatcaacacactcc |
136 |
Q |
| |
|
||||||||||| ||||||||||| || || || || |||| ||||| ||||| ||||||||||||||||| ||||| ||||| |||||||| || | |
|
|
| T |
28185358 |
tttttgaatgccggaatatttggcaatggtacagaatcaaattgtacactaccacatacagcaacaagagctgcaatgcttgtgaggatcaacactcttc |
28185259 |
T |
|
| Q |
137 |
tccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctccttaacaacaacgtcactccatgtttaccacttcgcggtacaatcac |
236 |
Q |
| |
|
| ||||| ||||| || || |||||||||||||||||||| ||||| || ||| | |||||||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
28185258 |
ttcaagggtattctggtattagatttgaaatcttggaagctatcacaaagctcttgaacaacaatattaccccatgtttaccacttcgcggtacaatcac |
28185159 |
T |
|
| Q |
237 |
agcttcaggagatttggtccctctgtcatacattgctggtttactaactggaagacctaattccaaagctcatggaccctctggagaagtagttaatgca |
336 |
Q |
| |
|
|||||| || ||| | || || || || |||||||| |||||| |||| || ||||| || || ||||| |||||| ||||||||| | | ||||| |
|
|
| T |
28185158 |
agcttccggtgatcttgttccactctcttacattgccggtttattaacgggcagacccaactctaaagccgttggaccgtctggagaaattctcaatgcc |
28185059 |
T |
|
| Q |
337 |
aaagaagcttttcaattggctggaatcaatgctgagttctttgaattacaaccaaaagaaggccttgcacttgttaacggaacagctgttggttccggtt |
436 |
Q |
| |
|
|| |||||||||||| | ||||| || | |||| ||||||||||| ||||| || ||||| ||||| |||||||| ||||| ||||||||||| |||| |
|
|
| T |
28185058 |
aaggaagcttttcaacttgctggcattggttctgatttctttgaattgcaacctaaggaaggtcttgctcttgttaatggaactgctgttggttctggtt |
28184959 |
T |
|
| Q |
437 |
tagcttctattgttctcttcgaggctaacattttggctgtgttgtctgaagttctatcagctatttttgctgaagttatgcaagggaaacctgagtttac |
536 |
Q |
| |
|
|||||||||||||||| ||||| || || | | || || |||||||||||| | || || ||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
28184958 |
tagcttctattgttctgttcgaagcaaatgtactagcggttttgtctgaagttatgtcggcaattttcgctgaagttatgcaagggaaacctgaatttac |
28184859 |
T |
|
| Q |
537 |
cgatcatttgacacacaagttgaaacaccaccctggtcaaattgaggctgctgctattatggaacacattttggatggaagtgcttatgtcaaagcagat |
636 |
Q |
| |
|
||||||||||| || |||||||| || ||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||||||| ||||| | | |
|
|
| T |
28184858 |
tgatcatttgactcataagttgaagcatcaccctggtcaaattgaagctgctgctattatggagcatattttggatggaagcgcttatgttaaagccgct |
28184759 |
T |
|
| Q |
637 |
aaaaagttgcatgagatggatccattgcagaaaccaaaacaagatagatatgcgcttagaacttcaccacaatggcttggtcctttggttgaagtgatta |
736 |
Q |
| |
|
|| ||||| || |||| ||||| ||||| || || ||||||||| | ||||| |||||||||||||| |||||||||||||||||| |||||||||| | |
|
|
| T |
28184758 |
aagaagttacacgagactgatcctttgcaaaagcctaaacaagatcgttatgcacttagaacttcacctcaatggcttggtcctttgattgaagtgataa |
28184659 |
T |
|
| Q |
737 |
gattctctaccaagtcaattgagagagagatcaactctgtcaatgacaaccctttgattgatgtttcaagaaacaaagctttgcatggtggaaattttca |
836 |
Q |
| |
|
|||| || |||||||| ||||| |||||||| ||||| ||||| |||||||||||||| ||||||||||| ||||| || | |||||||| || ||||| |
|
|
| T |
28184658 |
gattttcgaccaagtctattgaaagagagattaactcggtcaacgacaaccctttgatcgatgtttcaaggaacaaggccatacatggtggtaactttca |
28184559 |
T |
|
| Q |
837 |
aggaacgcctattggagtatccatggataatacacgtttggctctcgcatcaattggcaaacttatctttgctcaattctctgaacttgtcaatgatttt |
936 |
Q |
| |
|
|||||| ||||| ||||| || ||||| || || ||||| ||||| || || || || ||||| || ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
28184558 |
aggaacacctatcggagtttcaatggacaacactcgtttagctcttgcttcgatcggtaaactcatgtttgctcaattctctgagcttgttaatgatttt |
28184459 |
T |
|
| Q |
937 |
tacaacaatggattgccttcaaatctttctgccagtagaaatcctagtttggatt |
991 |
Q |
| |
|
||||||||||| |||||||| |||||| |||| |||||||| || |||||||||| |
|
|
| T |
28184458 |
tacaacaatggtttgccttcgaatcttactgcaagtagaaacccaagtttggatt |
28184404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 568 - 991
Target Start/End: Complemental strand, 42610213 - 42609790
Alignment:
| Q |
568 |
cctggtcaaattgaggctgctgctattatggaacacattttggatggaagtgcttatgtcaaagcag-ataaaaagttgcatgagatggatccattgcag |
666 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||| || || | | ||||||| |||||||| ||||| | ||| |
|
|
| T |
42610213 |
cctggtcaaattgaggctgctgctattatggaacatattttagatggaagttattatggtaaggctgcacaaaaagta-catgagattaatccacttcag |
42610115 |
T |
|
| Q |
667 |
aaaccaaaacaagatagatatgcgcttagaacttcaccacaatggcttggtcctttggttgaagtgattagattctctaccaagtcaattgagagagaga |
766 |
Q |
| |
|
|| || |||||||||||||| ||| || |||| ||||| || |||||||| || | ||||||||||| ||| | | || ||| |||||||| |||| |
|
|
| T |
42610114 |
aagcccaaacaagatagatacgcgattcgaacatcaccgcagtggcttggaccgcagattgaagtgattcgatacgcaacaaagatgattgagagggaga |
42610015 |
T |
|
| Q |
767 |
tcaactctgtcaatgacaaccctttgattgatgtttcaagaaacaaagctttgcatggtggaaattttcaaggaacgcctattggagtatccatggataa |
866 |
Q |
| |
|
| || || || |||||||| || | |||||||||||||| | || || | ||||| |||||||| ||||| || || ||||| ||||| |||||||| |
|
|
| T |
42610014 |
taaattccgtgaatgacaatccacttattgatgtttcaagggataaggcacttcatggaggaaatttccaaggtacaccgattggtgtatcgatggataa |
42609915 |
T |
|
| Q |
867 |
tacacgtttggctctcgcatcaattggcaaacttatctttgctcaattctctgaacttgtcaatgatttttacaacaatggattgccttcaaatctttct |
966 |
Q |
| |
|
|| ||||| || | || | ||||| |||||||| |||||||||||| |||| ||||| ||||| | || ||||| ||||||||||||| ||| || |
|
|
| T |
42609914 |
cactcgtttagccattgctgccattggtaaacttatgtttgctcaattcactgagcttgtgaatgacatctataacaacggattgccttcaagtctcact |
42609815 |
T |
|
| Q |
967 |
gccagtagaaatcctagtttggatt |
991 |
Q |
| |
|
|| || | ||||| |||||||||| |
|
|
| T |
42609814 |
gctagccgcaatccaagtttggatt |
42609790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 42610688 - 42610605
Alignment:
| Q |
93 |
cacagcaacaagagctgccatgctagtgagaatcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagc |
176 |
Q |
| |
|
|||||| |||||||| | |||| | || |||||||||||| | || ||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
42610688 |
cacagccacaagagcaggcatgttggttagaatcaacacattgcttcaaggatattcaggaatcagatttgaaatcatggaagc |
42610605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 1e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 385 - 962
Target Start/End: Original strand, 40549126 - 40549703
Alignment:
| Q |
385 |
caaccaaaagaaggccttgcacttgttaacggaacagctgttggttccggtttagcttctattgttctcttcgaggctaacattttggctgtgttgtctg |
484 |
Q |
| |
|
||||| |||||||| |||||||||||||| ||||| | ||||||| | |||||||||||||| ||||| || || ||||| || || |||| || |||| |
|
|
| T |
40549126 |
caacctaaagaaggtcttgcacttgttaatggaactggtgttggtgctggtttagcttctatagttctatttgatgctaatatcttaactgttttatctg |
40549225 |
T |
|
| Q |
485 |
aagttctatcagctatttttgctgaagttatgcaagggaaacctgagtttaccgatcatttgacacacaagttgaaacaccaccctggtcaaattgaggc |
584 |
Q |
| |
|
|| || | ||||| ||||| ||||||||||||||||| || || |||||||| |||||||| ||||| || |||||||| || |||||||||||||| || |
|
|
| T |
40549226 |
aaattatgtcagcgattttcgctgaagttatgcaaggaaagccagagtttacagatcatttaacacataaattgaaacatcatcctggtcaaattgaagc |
40549325 |
T |
|
| Q |
585 |
tgctgctattatggaacacattttggatggaagtgcttatgtcaaagcagataaaaagttgcatgagatgga--tccattgcagaaa-ccaaaacaagat |
681 |
Q |
| |
|
||| || | |||||||| |||||| || |||||| | ||| | || | | || | ||||||||| || | ||| ||||| || ||||||||| |
|
|
| T |
40549326 |
tgcagccttgatggaacatattttgcataaaagtgcctgtgttcatgccgcaacgaaatcgcatgagatagattttcat---agaaagcctaaacaagat |
40549422 |
T |
|
| Q |
682 |
agatatgcgcttagaacttcaccacaatggcttggtcctttggttgaagtgattagattctctaccaagtcaattgagagagagatcaactctgtcaatg |
781 |
Q |
| |
|
|||||||| ||||| |||||||| |||||| | ||||| ||||||| ||||| | || || || ||||||||||||||||| || ||||| |||| |
|
|
| T |
40549423 |
agatatgcacttaggacttcaccgcaatggttaggtccacaaattgaagttattaggtattcaacaaaatcaattgagagagagattaattctgtgaatg |
40549522 |
T |
|
| Q |
782 |
acaaccctttgattgatgtttcaagaaacaaagctttgcatggtggaaattttcaaggaacgcctattggagtatccatggataatacacgtttggctct |
881 |
Q |
| |
|
| || |||||||||||||| ||| ||||||||||||||||||||||| |||||||| || || ||||| || || |||||||||||| | || ||| | |
|
|
| T |
40549523 |
ataatcctttgattgatgtgaaaaggaacaaagctttgcatggtggaaactttcaaggtacaccaattggtgtttctatggataatacaagattagcttt |
40549622 |
T |
|
| Q |
882 |
cgcatcaattggcaaactta-tctttgctcaattctctgaacttgtcaatgatttttacaacaatggattgccttcaaatct |
962 |
Q |
| |
|
|| | ||||| ||| ||| | ||||||||| | ||||| | || |||||||||||||||||||| |||||||||||||| |
|
|
| T |
40549623 |
ggctgctattgg-aaagttactttttgctcaaatgtctgagttggttaatgatttttacaacaatggtttgccttcaaatct |
40549703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 32 - 218
Target Start/End: Original strand, 40548770 - 40548956
Alignment:
| Q |
32 |
acagatttttgaatgctggaatatttggaaacggaactgagtcaagccacacacttccacacacagcaacaagagctgccatgctagtgagaatcaacac |
131 |
Q |
| |
|
|||| ||||||||||||||||| ||||| || ||||| || | |||| ||| | ||||| | |||||||||||||| ||| |||| ||||||||||| |
|
|
| T |
40548770 |
acaggtttttgaatgctggaatttttggtaatggaacagaacaatgccatacattgccacaaaatgcaacaagagctgcaatgttagtaagaatcaacac |
40548869 |
T |
|
| Q |
132 |
actcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctccttaacaacaacgtcactccatgtttacc |
218 |
Q |
| |
|
|||||| ||||| || ||||||||||||| |||||| | |||||||| || || || || ||| ||||| | || ||||||||||| |
|
|
| T |
40548870 |
actccttcaaggctactcaggaatcagatatgaaatgctagaagccattacaaaacttctcaaccacaacattacaccatgtttacc |
40548956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 1e-22; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 394 - 617
Target Start/End: Original strand, 43216168 - 43216391
Alignment:
| Q |
394 |
gaaggccttgcacttgttaacggaacagctgttggttccggtttagcttctattgttctcttcgaggctaacattttggctgtgttgtctgaagttctat |
493 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||||||||| || ||| | |||||||| || || || ||||| ||||| || ||| |||| || | |||||||| |
|
|
| T |
43216168 |
gaaggtcttgctcttgtaaacggtacagctgttggatctggtgtggcttctatggtactttttgaggcaaacatattagctttgttttcagtagttctat |
43216267 |
T |
|
| Q |
494 |
cagctatttttgctgaagttatgcaagggaaacctgagtttaccgatcatttgacacacaagttgaaacaccaccctggtcaaattgaggctgctgctat |
593 |
Q |
| |
|
|||| |||| ||||||| |||||||| || || || ||||| ||||| | | ||||||| |||| ||| || |||||||| ||||| |||||||| |
|
|
| T |
43216268 |
cagcagttttcactgaagtcatgcaaggaaagccggaatttacacatcatcttatacacaagctgaagttccatccaggtcaaatcgaggcagctgctat |
43216367 |
T |
|
| Q |
594 |
tatggaacacattttggatggaag |
617 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
43216368 |
tatggaacacattttagatggaag |
43216391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 821 - 991
Target Start/End: Original strand, 43216592 - 43216762
Alignment:
| Q |
821 |
atggtggaaattttcaaggaacgcctattggagtatccatggataatacacgtttggctctcgcatcaattggcaaacttatctttgctcaattctctga |
920 |
Q |
| |
|
||||||| ||||| ||||| || || |||||||| || ||||||||| |||||| ||| | | |||||||| ||||| ||||||| ||||| |||| |
|
|
| T |
43216592 |
atggtggtaatttccaaggcaccccaattggagtttcaatggataatgtacgtttagctgttacttcaattggaaaactcgtctttgcgcaatttactga |
43216691 |
T |
|
| Q |
921 |
acttgtcaatgatttttacaacaatggattgccttcaaatctttctgccagtagaaatcctagtttggatt |
991 |
Q |
| |
|
| |||||||| || || |||||||| |||| |||||||||||||| ||||||| || ||| |||||| |
|
|
| T |
43216692 |
gttagtcaatgacttgtataacaatgggctgccgtcaaatctttctgctggtagaaacccaagtctggatt |
43216762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 191
Target Start/End: Original strand, 43215871 - 43215965
Alignment:
| Q |
97 |
gcaacaagagctgccatgctagtgagaatcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctcct |
191 |
Q |
| |
|
||||||||||| || ||||| ||||| | || || || || ||||| |||||||| || |||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
43215871 |
gcaacaagagcagctatgcttgtgagggttaatacccttctacaaggctattcaggcattagatttgaaatcttagaagctatcaccaagctcct |
43215965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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