View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9021_low_14 (Length: 540)
Name: NF9021_low_14
Description: NF9021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9021_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 271 - 517
Target Start/End: Complemental strand, 5243550 - 5243302
Alignment:
| Q |
271 |
actaccaccaaagaaagtcataacaagacattatatggaaaataaacaaacctaagacacaaacattgactaccacatgctagctatttattagaaaaac |
370 |
Q |
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| T |
5243550 |
actaccaccaaagaaagtcataacaagacattatatggaaaataaacaaacctaagacacaaacattgactaccacatgctagctatttattagaaaaac |
5243451 |
T |
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| Q |
371 |
taaannnnnnnnnnnnnnn--tttgatcattggttagctatatatataaccaactaacagcatgacctaaaacaaactagtttttgacacacattaaagt |
468 |
Q |
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| T |
5243450 |
taaaacacacacaacacacactttgatcattggttagctatatatataaccaactaacagcatgacctaaaacaaactagtttttgacacacattaaagt |
5243351 |
T |
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| Q |
469 |
tagctagcacataagaggtgatgatgatggatcacttgttctggctcct |
517 |
Q |
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| T |
5243350 |
tagctagcacataagaggtgatgatgatggatcacttgttctggctcct |
5243302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 5243747 - 5243554
Alignment:
| Q |
18 |
tttcattctccattttattttgtataagagtttaattaataaaaaacccatgtcttgaatttgttcaagaacatctatgcccgaatt------gtta-tc |
110 |
Q |
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| T |
5243747 |
tttcattctccattttattttttggaagagtttaattaataaaaaacccatgtcttgaatttgttcaagaacatctatgcccgaattaaacaatttactc |
5243648 |
T |
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| Q |
111 |
tacagcagcattaaaattggaaatcaggaa---aaagaataaggagagcgcataacatcaacacaacgtg-tttaagataactaaactcttaac |
200 |
Q |
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| T |
5243647 |
attatcagcattaaaatttgaaagcaggaaaataataaataagaagaacgcataacatcaacacaacgcgttttaagataactaaactcttaac |
5243554 |
T |
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