View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9021_low_19 (Length: 421)
Name: NF9021_low_19
Description: NF9021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9021_low_19 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 59 - 411
Target Start/End: Original strand, 29925739 - 29926092
Alignment:
| Q |
59 |
gtgaaaatgattaaaaatctggataggcatacttgacagaaataatcttactgacattcaaaaaagacactagagtagtgtacatgcttcaacagtctta |
158 |
Q |
| |
|
|||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29925739 |
gtgaaaatgattaaaaatctggatagacatattagacagaaataatcttactgacattcaaaaaagacactagagtagtgtacatgcttcaacagtctta |
29925838 |
T |
|
| Q |
159 |
ataaatagcatgtcttttgcattactctttcgcattacatggcattt-cctacattattatgtttaggcaatgttcatctgtgcctttgatattttgttt |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29925839 |
ataaatagcatgtcttttgcattactctttcgcattacatggtattttcctacattactatgtttaggcaatgttcatctgtgcctttgatattttgttt |
29925938 |
T |
|
| Q |
258 |
cttattgataacaaggaataataaatcaactctttggtttgttcaaactaaaatggaaaatataaaatttaccacattagttttgtgcttcgatgcagtc |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||| ||||||||| |
|
|
| T |
29925939 |
cttattgataacaaggaataataaatcaactctttggtttgttcaaactaaaatggaaaagataaaattgaccacattaattttgtgctttgatgcagtc |
29926038 |
T |
|
| Q |
358 |
aattcaaataaaagaattattaaatcttaaccaggagtctaggggatcatctct |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
29926039 |
aattcaaataaaagaattattaaatcttaaccaggagtctagaggatcctctct |
29926092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 70 - 165
Target Start/End: Original strand, 28279735 - 28279831
Alignment:
| Q |
70 |
taaaaatctggataggcatacttgacagaaataatcttactgacattc-aaaaaagacactagagtagtgtacatgcttcaacagtcttaataaata |
165 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||| |||| |||| ||||||||||| ||||||||||||||| |
|
|
| T |
28279735 |
taaaaatctggatagacatatttgacagaaataatcttactgacattcaaaaaaagacgctagggtagcatacatgcttcaccagtcttaataaata |
28279831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 29925622 - 29925664
Alignment:
| Q |
18 |
caaccttttctttctgttcagtaaatccatctatttaactagt |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29925622 |
caaccttttctttctgttcagtaaatccatctatttaactagt |
29925664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 28279596 - 28279631
Alignment:
| Q |
22 |
cttttctttctgttcagtaaatccatctatttaact |
57 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28279596 |
cttttctttctgtttagtaaatccatctatttaact |
28279631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University