View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9021_low_23 (Length: 406)

Name: NF9021_low_23

Description: NF9021

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF9021_low_23

[»] chr8 (3 HSPs)

Target: chr8 (Bit Score: 115; Significance: 3e-58; HSPs: 3)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 115; E-Value: 3e-58

Query Start/End: Original strand, 288 - 406

Target Start/End: Original strand, 32718519 - 32718637

Alignment:

Q	288	gaaacaatccgtgtaacatgttgtgatgcttaattcttaggaacatatgtgggtctgaatctgatgaaaaccaaatgttggtcataccaaacatcatttt	387	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32718519	gaaacaatccgtgtaacatgttgtgatgcttaattcttaggaacatatgtgggtctgaatctgatgaaaaccaaatgttggtcataccaaacatcatttt	32718618	T

Q	388	gtccactagatgatgactc	406	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	32718619	gtccactggatgatgactc	32718637	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2

Raw Score: 102; E-Value: 2e-50

Query Start/End: Original strand, 128 - 261

Target Start/End: Original strand, 32718352 - 32718480

Alignment:

Q	128	gagggtgtagaaaagagggatgtgcatcgtacacgtatggtggtacatgcatgcatcataactcttcatgaatcacgtgtatattatattacttggtatt	227	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|
T	32718352	gagggtgtagaagagagggatgtacatcgtacacgtatggtggtacatgcatgcatcataactcttcatgaatcacgtgtatattg-----cttggtatt	32718446	T

Q	228	catagagttgagactagtgatactaattccgtgt	261	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32718447	catagagttgagactagtgatactaattccgtgt	32718480	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3

Raw Score: 29; E-Value: 0.0000006

Query Start/End: Original strand, 33 - 61

Target Start/End: Original strand, 32711733 - 32711761

Alignment:

Q	33	gagggagtgagacacgacggtgagacaat	61	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32711733	gagggagtgagacacgacggtgagacaat	32711761	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]