View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9021_low_24 (Length: 400)

Name: NF9021_low_24
Description: NF9021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9021_low_24
NF9021_low_24
[»] chr7 (49 HSPs)
chr7 (9-216)||(11685331-11685538)
chr7 (86-386)||(45464683-45464983)
chr7 (240-392)||(11684057-11684209)
chr7 (86-386)||(4321375-4321673)
chr7 (83-216)||(34784308-34784441)
chr7 (41-392)||(38614327-38614669)
chr7 (87-392)||(2168343-2168649)
chr7 (86-386)||(34692250-34692554)
chr7 (86-386)||(48302444-48302744)
chr7 (86-315)||(1547241-1547467)
chr7 (82-367)||(3690440-3690725)
chr7 (86-195)||(30108857-30108966)
chr7 (86-392)||(23954794-23955099)
chr7 (225-386)||(30109024-30109185)
chr7 (101-392)||(46994970-46995261)
chr7 (85-367)||(36756398-36756681)
chr7 (85-367)||(36762195-36762478)
chr7 (86-157)||(19712014-19712085)
chr7 (85-216)||(36766074-36766205)
chr7 (101-215)||(40785216-40785330)
chr7 (82-216)||(46810995-46811129)
chr7 (82-196)||(7403476-7403590)
chr7 (88-216)||(8421712-8421840)
chr7 (9-108)||(19712098-19712197)
chr7 (83-201)||(13036191-13036309)
chr7 (82-216)||(45360929-45361062)
chr7 (88-216)||(35342722-35342850)
chr7 (84-216)||(37791965-37792097)
chr7 (83-217)||(23904917-23905052)
chr7 (86-216)||(6605032-6605162)
chr7 (82-216)||(13169302-13169435)
chr7 (82-216)||(39857999-39858133)
chr7 (86-216)||(47384608-47384738)
chr7 (225-330)||(48705396-48705499)
chr7 (287-372)||(40785079-40785164)
chr7 (144-216)||(48850929-48851001)
chr7 (83-138)||(12904046-12904101)
chr7 (83-201)||(48311427-48311543)
chr7 (82-172)||(3921007-3921096)
chr7 (186-273)||(12903939-12904026)
chr7 (86-216)||(38549845-38549975)
chr7 (83-215)||(22155495-22155626)
chr7 (83-215)||(22211410-22211541)
chr7 (84-216)||(38472573-38472705)
chr7 (83-214)||(34775362-34775493)
chr7 (249-303)||(8421867-8421921)
chr7 (31-77)||(34784243-34784289)
chr7 (94-150)||(27956933-27956988)
chr7 (83-119)||(48227707-48227743)
[»] chr8 (47 HSPs)
chr8 (9-216)||(11031621-11031828)
chr8 (86-386)||(40019448-40019748)
chr8 (83-294)||(25356622-25356834)
chr8 (82-392)||(33369050-33369362)
chr8 (95-386)||(28432520-28432810)
chr8 (83-392)||(9876053-9876361)
chr8 (86-216)||(10269206-10269336)
chr8 (82-372)||(461467-461756)
chr8 (86-372)||(33158951-33159236)
chr8 (86-216)||(9186302-9186432)
chr8 (83-381)||(38881691-38881992)
chr8 (86-216)||(10268093-10268223)
chr8 (86-316)||(44620244-44620472)
chr8 (82-367)||(1321829-1322115)
chr8 (82-214)||(10770636-10770768)
chr8 (83-188)||(25373335-25373440)
chr8 (82-163)||(25705571-25705652)
chr8 (82-337)||(42895061-42895317)
chr8 (86-216)||(15684048-15684178)
chr8 (83-189)||(25402504-25402610)
chr8 (83-189)||(25707013-25707119)
chr8 (111-216)||(12515395-12515499)
chr8 (82-201)||(11719746-11719865)
chr8 (82-149)||(25370798-25370865)
chr8 (249-392)||(33748793-33748935)
chr8 (9-106)||(9186447-9186544)
chr8 (83-216)||(17807313-17807446)
chr8 (82-392)||(31822975-31823276)
chr8 (85-216)||(11790496-11790627)
chr8 (82-216)||(32823938-32824072)
chr8 (225-370)||(25371636-25371781)
chr8 (82-201)||(24527184-24527303)
chr8 (82-200)||(37525149-37525267)
chr8 (82-216)||(41041032-41041166)
chr8 (83-216)||(13484831-13484964)
chr8 (287-372)||(37525333-37525418)
chr8 (182-294)||(8655640-8655752)
chr8 (83-216)||(41824261-41824394)
chr8 (9-97)||(10267998-10268086)
chr8 (88-216)||(31199781-31199909)
chr8 (101-216)||(33748644-33748759)
chr8 (339-392)||(11719994-11720047)
chr8 (83-216)||(22273535-22273668)
chr8 (84-216)||(29693963-29694095)
chr8 (320-367)||(32823816-32823863)
chr8 (339-392)||(11790317-11790370)
chr8 (354-386)||(42895321-42895353)
[»] chr3 (41 HSPs)
chr3 (82-390)||(26448037-26448342)
chr3 (84-304)||(30501391-30501610)
chr3 (86-290)||(40962981-40963184)
chr3 (84-392)||(1847154-1847462)
chr3 (86-386)||(41945600-41945898)
chr3 (84-380)||(32842721-32843017)
chr3 (90-316)||(49494787-49495011)
chr3 (82-383)||(48634872-48635173)
chr3 (82-371)||(24382004-24382293)
chr3 (86-201)||(37865676-37865791)
chr3 (101-363)||(31885827-31886088)
chr3 (82-216)||(2975749-2975883)
chr3 (86-195)||(33051144-33051253)
chr3 (184-392)||(33112233-33112441)
chr3 (258-386)||(37886239-37886367)
chr3 (182-386)||(23775149-23775353)
chr3 (82-392)||(35861831-35862141)
chr3 (240-392)||(45897487-45897640)
chr3 (254-392)||(2975887-2976024)
chr3 (82-367)||(18429030-18429314)
chr3 (82-367)||(45255773-45256058)
chr3 (101-367)||(33851291-33851555)
chr3 (83-216)||(2378576-2378709)
chr3 (83-216)||(42282135-42282268)
chr3 (101-308)||(10380511-10380719)
chr3 (82-216)||(610850-610984)
chr3 (86-216)||(51686013-51686143)
chr3 (83-216)||(17516608-17516741)
chr3 (83-216)||(21350257-21350390)
chr3 (83-216)||(30598658-30598791)
chr3 (82-214)||(44268301-44268432)
chr3 (339-385)||(13466609-13466655)
chr3 (82-216)||(23887489-23887622)
chr3 (82-216)||(27897512-27897646)
chr3 (83-216)||(23875963-23876095)
chr3 (83-208)||(45897342-45897467)
chr3 (9-77)||(30501299-30501367)
chr3 (9-79)||(7589470-7589540)
chr3 (82-216)||(23291889-23292023)
chr3 (339-392)||(22218719-22218772)
chr3 (17-77)||(40963210-40963270)
[»] chr2 (29 HSPs)
chr2 (86-386)||(11021825-11022125)
chr2 (86-386)||(28247674-28247974)
chr2 (86-216)||(363354-363485)
chr2 (86-375)||(11313127-11313402)
chr2 (86-386)||(38149535-38149836)
chr2 (86-216)||(7744932-7745062)
chr2 (84-391)||(10715400-10715690)
chr2 (83-216)||(17948601-17948734)
chr2 (82-386)||(37418263-37418569)
chr2 (86-392)||(35575-35881)
chr2 (86-209)||(2359394-2359516)
chr2 (83-386)||(42880309-42880610)
chr2 (82-216)||(34400628-34400762)
chr2 (82-216)||(42517877-42518011)
chr2 (88-216)||(15373554-15373683)
chr2 (183-343)||(40150664-40150825)
chr2 (82-294)||(40152135-40152346)
chr2 (83-215)||(17697776-17697903)
chr2 (82-216)||(19907036-19907170)
chr2 (249-367)||(42002990-42003108)
chr2 (88-216)||(41708097-41708225)
chr2 (102-216)||(26581316-26581430)
chr2 (82-163)||(16377082-16377163)
chr2 (15-97)||(363509-363585)
chr2 (83-138)||(4047703-4047758)
chr2 (83-124)||(161813-161854)
chr2 (83-128)||(2359542-2359587)
chr2 (144-216)||(14387765-14387837)
chr2 (88-216)||(31474719-31474847)
[»] chr1 (27 HSPs)
chr1 (86-386)||(5784366-5784666)
chr1 (83-392)||(42558248-42558546)
chr1 (86-316)||(51123115-51123342)
chr1 (86-386)||(11152837-11153136)
chr1 (99-216)||(25172701-25172818)
chr1 (82-392)||(31803190-31803500)
chr1 (82-392)||(46637056-46637365)
chr1 (82-367)||(45379374-45379658)
chr1 (88-367)||(44158807-44159088)
chr1 (82-367)||(42135761-42136045)
chr1 (82-214)||(6576774-6576906)
chr1 (249-392)||(18183063-18183205)
chr1 (82-367)||(35478378-35478660)
chr1 (82-216)||(50554500-50554634)
chr1 (82-213)||(33679549-33679680)
chr1 (82-216)||(31237139-31237273)
chr1 (83-216)||(18058121-18058254)
chr1 (86-216)||(15105986-15106116)
chr1 (83-216)||(6817200-6817333)
chr1 (133-215)||(18180818-18180900)
chr1 (83-216)||(45045232-45045365)
chr1 (101-216)||(27952167-27952282)
chr1 (82-216)||(2870712-2870845)
chr1 (82-216)||(3012175-3012309)
chr1 (249-367)||(33679696-33679814)
chr1 (9-77)||(25172876-25172944)
chr1 (86-124)||(33599542-33599580)
[»] chr4 (36 HSPs)
chr4 (86-386)||(39922506-39922806)
chr4 (86-386)||(39084651-39084951)
chr4 (86-386)||(39190318-39190618)
chr4 (86-386)||(42879576-42879876)
chr4 (86-386)||(43778681-43778979)
chr4 (86-386)||(5485551-5485851)
chr4 (86-385)||(44993100-44993399)
chr4 (87-216)||(13438146-13438275)
chr4 (86-386)||(32653130-32653430)
chr4 (97-282)||(25994708-25994897)
chr4 (86-216)||(230740-230869)
chr4 (82-392)||(4519959-4520270)
chr4 (101-367)||(44556917-44557183)
chr4 (143-215)||(39294553-39294625)
chr4 (82-366)||(27626246-27626530)
chr4 (83-372)||(51041027-51041314)
chr4 (84-196)||(28100865-28100977)
chr4 (84-216)||(13449984-13450107)
chr4 (82-216)||(2691684-2691818)
chr4 (83-216)||(20820290-20820423)
chr4 (82-360)||(35997284-35997568)
chr4 (33-109)||(39294645-39294721)
chr4 (88-216)||(47942413-47942541)
chr4 (83-216)||(54387537-54387670)
chr4 (278-385)||(10544498-10544605)
chr4 (101-216)||(44793243-44793358)
chr4 (82-216)||(11254378-11254512)
chr4 (88-173)||(10544693-10544778)
chr4 (82-163)||(26397635-26397715)
chr4 (83-216)||(49524394-49524527)
chr4 (82-216)||(35402069-35402202)
chr4 (352-392)||(27385940-27385980)
chr4 (31-109)||(230650-230728)
chr4 (231-392)||(28101018-28101179)
chr4 (83-120)||(42982211-42982248)
chr4 (83-119)||(20494146-20494182)
[»] chr6 (12 HSPs)
chr6 (86-386)||(17950853-17951152)
chr6 (86-386)||(35174674-35174974)
chr6 (84-380)||(17936042-17936339)
chr6 (86-386)||(34344824-34345123)
chr6 (86-214)||(4289710-4289838)
chr6 (35-208)||(31210129-31210313)
chr6 (82-216)||(33277101-33277234)
chr6 (83-216)||(7371453-7371586)
chr6 (84-208)||(30639903-30640027)
chr6 (82-201)||(11356803-11356922)
chr6 (86-163)||(33267342-33267419)
chr6 (96-172)||(14337985-14338061)
[»] chr5 (32 HSPs)
chr5 (82-216)||(1344478-1344612)
chr5 (86-386)||(42619581-42619875)
chr5 (9-211)||(24497749-24497969)
chr5 (82-392)||(18726853-18727164)
chr5 (82-384)||(38176923-38177225)
chr5 (82-384)||(38204147-38204449)
chr5 (86-392)||(35291343-35291644)
chr5 (101-392)||(40330004-40330296)
chr5 (82-392)||(32089411-32089725)
chr5 (84-216)||(1343482-1343614)
chr5 (86-316)||(27350095-27350322)
chr5 (239-392)||(43317176-43317329)
chr5 (101-386)||(32836186-32836470)
chr5 (82-316)||(6116465-6116700)
chr5 (240-392)||(18341593-18341745)
chr5 (82-216)||(18623765-18623899)
chr5 (82-216)||(32134556-32134690)
chr5 (101-364)||(35400226-35400489)
chr5 (83-216)||(34328466-34328600)
chr5 (83-216)||(12738337-12738470)
chr5 (83-216)||(12801160-12801293)
chr5 (83-216)||(27077123-27077256)
chr5 (83-216)||(33257426-33257559)
chr5 (345-392)||(33257262-33257309)
chr5 (95-213)||(41494167-41494285)
chr5 (82-163)||(30464263-30464344)
chr5 (83-163)||(28035772-28035852)
chr5 (339-386)||(27076963-27077010)
chr5 (82-172)||(28821770-28821860)
chr5 (86-120)||(29620495-29620529)
chr5 (84-120)||(8541036-8541072)
chr5 (83-163)||(19998149-19998229)
[»] scaffold0006 (1 HSPs)
scaffold0006 (88-316)||(37856-38082)
[»] scaffold0070 (1 HSPs)
scaffold0070 (82-303)||(57669-57890)
[»] scaffold1041 (2 HSPs)
scaffold1041 (82-149)||(2643-2710)
scaffold1041 (82-149)||(2356-2423)
[»] scaffold0722 (1 HSPs)
scaffold0722 (82-211)||(4446-4574)
[»] scaffold0564 (1 HSPs)
scaffold0564 (83-216)||(9533-9666)
[»] scaffold0345 (1 HSPs)
scaffold0345 (82-201)||(1164-1283)


Alignment Details
Target: chr7 (Bit Score: 160; Significance: 4e-85; HSPs: 49)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 9 - 216
Target Start/End: Complemental strand, 11685538 - 11685331
Alignment:
Q  9 agcagagactaatgtggtcgacagtgaccaaaatttccaaggatcaaattaattgatttgtagaaaatgctttgctctttcttcctcaaatatataaaat 108  Q
    ||||| ||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||    
T  11685538 agcagggactaatgtggtcgatagcgaccaaaatttccaaggatcaaattgattgatttgtagaaaatgctttgctctttctcccccaaatatataaaat 11685439  T
Q  109 tggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttcttccccaattcaaaaagcttcaa 208  Q
    |||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  11685438 tggaaccctaattttacaatctgtaatctacactccaaaatctccaaaatttctttcaataattagaggtaacgttcttcaccaattcaaaaagcttcaa 11685339  T
Q  209 accctaat 216  Q
    | ||||||    
T  11685338 aacctaat 11685331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 86 - 386
Target Start/End: Complemental strand, 45464983 - 45464683
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||  ||||| ||||||||||||||||  ||| ||||||    
T  45464983 tttcttcctcaaatatataaaattggaactctaattttacaatgtgtaatctacactccaaaatctccaaattttctttcaataattaagggtcacgttc 45464884  T
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatct 285  Q
    |||||||| |||||||  | |||||||||||        |||||||| ||||  |||||||  |||||||  ||||||||| | |||| || ||||||||    
T  45464883 ttccccaaatcaaaaaattacaaaccctaattttttttaattgaatctgaaaaccaaaatctgcaaaattcattcaagcaatactgttgaaattgaatct 45464784  T
Q  286 gaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgtt 385  Q
     |||||||| | |||||   || ||||||||  |  ||| |||||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||||    
T  45464783 aaaatgatgggaggtggtcatatgggcaaaaagagctatcaaagtcaagcttcatcttcatcctccatgtttaatggtgatgtgagagtgcttgaatgtt 45464684  T
Q  386 g 386  Q
    |    
T  45464683 g 45464683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 240 - 392
Target Start/End: Complemental strand, 11684209 - 11684057
Alignment:
Q  240 caaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaa-gcaattatgaaagtcaagcttt 338  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||| |||||     
T  11684209 caaaatccccaaaatttcttcaagcaaaattgttcaatttgaatccgaaatgatgaggggtgg-tgtaagggcaaaaagcaattatgaaagtcgagcttc 11684111  T
Q  339 atctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 392  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  11684110 atctttaagctccatgtttaatggtgatgtgagagtacttgaatgttggtgtcc 11684057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 86 - 386
Target Start/End: Original strand, 4321375 - 4321673
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||  | ||| |||||| |||||||||  ||| ||||||    
T  4321375 tttcatccccaaatatataaaattggaaccctaattttacaatgtgtaatctacactccaaaatctcaaaattttcttccaataattaagggtcacgttc 4321474  T
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatct 285  Q
    |||||||| |||||||  | |||||||||||        |||||||| ||||  |||||||  |||||||  ||||||||||| | || || ||||||||    
T  4321475 ttccccaaatcaaaaaattgcaaaccctaat-ttttttaattgaatctgaaaaccaaaatctgcaaaattcattcaagcaaaactattgaaattgaatct 4321573  T
Q  286 gaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgtt 385  Q
     |||||||| |||||||   || ||||||||  |  ||| |||||||||||| ||||| |  |||||||||||||| |||||||||||||||||||||||    
T  4321574 aaaatgatg-ggggtggtcatatgggcaaaaagagctatcaaagtcaagcttcatcttcatcctccatgtttaatgttgatgtgagagtgcttgaatgtt 4321672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 34784308 - 34784441
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||  ||||||||| | |||||||||||||||||||    
T  34784308 ctctttcttccccaaatatataaaattggaaccctaattttacaatctttaatctacactccaaaatctccaaaatttatgtcaataattagtggtaacg 34784407  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    ||||||||||||||||||| || |||||||||||    
T  34784408 ttcttccccaattcaaaaaactccaaaccctaat 34784441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 41 - 392
Target Start/End: Complemental strand, 38614669 - 38614327
Alignment:
Q  41 atttccaaggatcaaattaattgatttgtagaaaatgctttgctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctaca 140  Q
    ||||| |||||  ||||| ||||||||| |||||||| ||||  ||||||||| ||  | ||||||||||||| |||||||  ||||| || ||||||      
T  38614669 atttcaaaggactaaattgattgatttgcagaaaatgttttgg-ctttcttccccagctgtataaaattggaatcctaattacacaatctgcaatcta-- 38614573  T
Q  141 ctccaaaattcccaaaatttctttcaataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattc 240  Q
         ||||  |||||||||| | ||||||| ||||||   ||||||| || ||||||||| ||||||||||||||        |||||||| ||||  |    
T  38614572 -----aaatcaccaaaatttcctccaataataagtggtccagttcttctccgattcaaaaaacttcaaaccctaattttttcgtattgaatctgaaagcc 38614478  T
Q  241 aaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttat 340  Q
    ||||||  ||||||||||| |||||||| | || || ||||||||||||||||| ||||||||  || ||| |||| || ||||||||||| ||||| ||    
T  38614477 aaaatcctcaaaatttcttgaagcaaaactattgaaattgaatctgaaatgatg-ggggtgggaatatgggaaaaaacagttatgaaagtcgagcttcat 38614379  T
Q  341 ctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 392  Q
    ||| |||||||| || |||||||||||||||||||||| ||||||| |||||    
T  38614378 cttcaagctccaagtctaatggtgatgtgagagtgcttaaatgttggtgtcc 38614327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 87 - 392
Target Start/End: Complemental strand, 2168649 - 2168343
Alignment:
Q  87 ttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttct 186  Q
    ||||||| ||| | |||||||||| ||||||||||  ||||| || ||||||||||| |||||  |||||||||| | ||||||| ||| ||   |||||    
T  2168649 ttcttccccaattgtataaaattgtaaccctaattacacaatctgcaatctacactctaaaatcaccaaaatttcctccaataataagtagtccagttct 2168550  T
Q  187 tccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctg 286  Q
    || |||||||||||| ||||||||||||||        |||||||| ||||  |||||||  ||||||||||| |||||||| | || || ||||||||     
T  2168549 tctccaattcaaaaaacttcaaaccctaattttttcgtattgaatctgaaagccaaaatcctcaaaatttcttgaagcaaaactattgaaattgaatcta 2168450  T
Q  287 aaatgatgaggggtgggtgtaaggg--caaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgt 384  Q
    |||||||| ||||||||  || |||   ||||  | ||||||||||| ||||||||||| |||||||| ||||||||||||||| ||||||||  |||||    
T  2168449 aaatgatg-ggggtgggaatatgggaaaaaaaatagttatgaaagtcgagctttatcttcaagctccaagtttaatggtgatgtcagagtgctcaaatgt 2168351  T
Q  385 tgatgtcc 392  Q
    || |||||    
T  2168350 tggtgtcc 2168343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 86 - 386
Target Start/End: Complemental strand, 34692554 - 34692250
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||  ||||| |||||| |||||||||||||| ||||||    
T  34692554 tttcttccccaaatatataaaattggaaccctaattttacaatgtttaatctacactccaaaatctccaaattttcttccaataattagtggtcacgttc 34692455  T
Q  186 ttccccaattcaaaaagcttcaaacc-ctaa----tannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttg 280  Q
    |||||||| |||||||  | |||||| ||||    |        |||||||| ||||  |||||||  |||||||  ||||||||||| | || || |||    
T  34692454 ttccccaaatcaaaaaattccaaaccactaatttttttttttttattgaatctgaaaaccaaaatctgcaaaattcattcaagcaaaactattgaaattg 34692355  T
Q  281 aatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttga 380  Q
    ||||| |||||||| ||||| |   || ||||||||  |  ||| |||||||||||| ||||| |  || |||||||||| ||||||||||| |||||||    
T  34692354 aatctaaaatgatg-ggggtagtcatatgggcaaaaagagctatcaaagtcaagcttcatcttcatcctacatgtttaatagtgatgtgagaatgcttga 34692256  T
Q  381 atgttg 386  Q
    ||||||    
T  34692255 atgttg 34692250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 86 - 386
Target Start/End: Original strand, 48302444 - 48302744
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| |||||||||||||||| ||| ||||||||||||| |||| |||||||||||||||  ||||| || ||| |||||||||   || ||||||    
T  48302444 tttcttccccaaatatataaaattgaaactctaattttacaatgtgtattctacactccaaaatctccaaatttgcttccaataattaagagtcacgttc 48302543  T
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatct 285  Q
    |||||||| |||||||  | |||||||||||        |||||||  ||||  |||||||  |||||||  ||||||||||| |||| || ||||| |     
T  48302544 ttccccaaatcaaaaaattgcaaaccctaattttttttaattgaatatgaaaaccaaaatcttcaaaattcattcaagcaaaactgttgaaattgaaaca 48302643  T
Q  286 gaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgtt 385  Q
     |||||||  |||||||   || ||||||||  |  ||| ||||||||| || ||||| |   |||||||||||||||||||||||||||||||||||||    
T  48302644 aaaatgattgggggtggtcatatgggcaaaaagagctatcaaagtcaagtttcatcttcatcttccatgtttaatggtgatgtgagagtgcttgaatgtt 48302743  T
Q  386 g 386  Q
    |    
T  48302744 g 48302744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 86 - 315
Target Start/End: Complemental strand, 1547467 - 1547241
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| ||||| |||||||||| ||||||||||||||||| | ||||| |||||| ||||||||||||| |||||||||||||||||||||||||||    
T  1547467 tttcttccccaaatgtataaaattgaaaccctaattttacaatctttaatccacactctaaaattcccaaaa-ttctttcaataattagtggtaacgttc 1547369  T
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaat-tcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatc 284  Q
    |||||| ||| ||| | | ||||||||||||        ||||||| ||||||   |||||| |||||||| |||||| ||||| ||||  | ||||||     
T  1547368 ttccccgattgaaataacctcaaaccctaat--tttttgattgaattcgaaataaaaaaatccccaaaattccttcaaacaaaactgttgtaattgaata 1547271  T
Q  285 tgaaatgatgaggggtgggtgtaagggcaaa 315  Q
     ||||||||| |||||||||||| |||||||    
T  1547270 cgaaatgatg-ggggtgggtgtatgggcaaa 1547241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 82 - 367
Target Start/End: Original strand, 3690440 - 3690725
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    ||||| |||||| ||| | |||||||||||||||||||||  ||||| || |||||||| || |||||  || ||||||| | ||||||| ||||||       
T  3690440 gctctgtcttccccaattgtataaaattggaaccctaattacacaatttgcaatctacattctaaaatcacctaaatttcctccaataataagtggtcca 3690539  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 281  Q
    |||||||||||||||||||| ||| ||||||||||        |||||||| ||||  |||||||  ||||||||||| |||||||| | || || ||||    
T  3690540 gttcttccccaattcaaaaaacttgaaaccctaattttttcgtattgaatctgaaagccaaaatccacaaaatttcttgaagcaaaactattgaaattga 3690639  T
Q  282 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatg 367  Q
    |||||||||||   ||||||||  || ||| ||||    ||||||||||||||||| ||||| |||||||| ||||| ||||||||    
T  3690640 atctgaaatgaaatggggtgggaatatgggaaaaaattgttatgaaagtcaagcttcatcttcaagctccaagtttagtggtgatg 3690725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 86 - 195
Target Start/End: Original strand, 30108857 - 30108966
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||| |||||| |||||||||  ||| ||||||    
T  30108857 tttcttccccaaatatataaaattggaaccctaattttacaatgtgtaatctacactccaaaatctccaaattttcttccaataattaagggtcacgttc 30108956  T
Q  186 ttccccaatt 195  Q
    ||||||||||    
T  30108957 ttccccaatt 30108966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 86 - 392
Target Start/End: Complemental strand, 23955099 - 23954794
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| ||| | |||||||||||||||||||||  ||||| |  | ||||||||| |||||  | |||||||| | ||||||| ||||||   ||||    
T  23955099 tttcttccccaattgtataaaattggaaccctaattacacaatcttcagtctacactctaaaataacaaaaatttcctccaataataagtggtccagttc 23955000  T
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatct 285  Q
    ||| ||||||||| || ||||||||||||||        |||||||| ||||   ||||||  ||||||||||| |||||||| | || |  ||||||||    
T  23954999 ttcgccaattcaacaaacttcaaaccctaatttcttggtattgaatctgaaagctaaaatcctcaaaatttcttgaagcaaaactattgacattgaatct 23954900  T
Q  286 gaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgtt 385  Q
    ||||||| | |||||| |  || ||  |||| || |||||||| || ||||| |||||  ||||||| ||||||||||| ||| ||||||||||||||||    
T  23954899 gaaatgacg-ggggtgagaatatggaaaaaaacagttatgaaaatcgagcttcatcttcgagctccaagtttaatggtgttgttagagtgcttgaatgtt 23954801  T
Q  386 gatgtcc 392  Q
    | |||||    
T  23954800 ggtgtcc 23954794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 225 - 386
Target Start/End: Original strand, 30109024 - 30109185
Alignment:
Q  225 attgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattat 324  Q
    |||||||| |||| ||||||||  |||||||  ||||||||||| |||| || |||||||| |||||||| | |||||   || ||||||||  || |||    
T  30109024 attgaatctgaaaatcaaaatctgcaaaattcattcaagcaaaactgttgaaattgaatctaaaatgatgggaggtggtcatatgggcaaaaagaactat 30109123  T
Q  325 gaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttg 386  Q
     |||||||||||| ||||| |  |||||||||||||||||||||||||||||||||||||||    
T  30109124 caaagtcaagcttcatcttcatcctccatgtttaatggtgatgtgagagtgcttgaatgttg 30109185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 101 - 392
Target Start/End: Original strand, 46994970 - 46995261
Alignment:
Q  101 tataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttcttccccaattcaaaa 200  Q
    ||||||||||||||| |||||  ||||| || ||||||||||| | |||    |||||||| | ||||||| ||||||   ||||| |||||||||||||    
T  46994970 tataaaattggaaccttaattacacaatctgcaatctacactctataatcatgaaaatttcctccaataataagtggttcagttctgccccaattcaaaa 46995069  T
Q  201 agcttcaaaccctaatannnnnnn-attgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgagggg 299  Q
    | || |||||||||||         | |||||  ||||  || ||||  ||||||||||| |||||||| | || || ||||||||||||||||| ||||    
T  46995070 aactccaaaccctaatttttttcgtagtgaatttgaaagccagaatcctcaaaatttcttgaagcaaaactattgaaattgaatctgaaatgatgtgggg 46995169  T
Q  300 tgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 392  Q
    ||||  || ||  | || |  ||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||| |||||    
T  46995170 tgggaatatggaaataa-cggttatgaaagtcaagcttcatcttcaagctccaagtttaatggtgttgtgagagtgcttgaatgttggtgtcc 46995261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 85 - 367
Target Start/End: Complemental strand, 36756681 - 36756398
Alignment:
Q  85 ctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgtt 184  Q
    ||||||||| ||| | |||||||||| ||||||||||  ||||| || ||||||||||| |||||  || ||||||| | ||||||| ||||||   |||    
T  36756681 ctttcttccccaattgtataaaattgaaaccctaattacacaatctgcaatctacactctaaaatcacctaaatttcctccaataataagtggtttagtt 36756582  T
Q  185 cttccccaattcaaaaagcttcaaaccctaa-tannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaat 283  Q
    ||||||||||||||||| ||||||||||||| |        ||||||||  |||  |||| ||  ||||||||||| |||||||| | || || |  |||    
T  36756581 cttccccaattcaaaaaacttcaaaccctaatttttttcgtattgaatcataaaaccaaattcctcaaaatttcttgaagcaaaactattgaaataaaat 36756482  T
Q  284 ctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatg 367  Q
    |  |||||||| ||||||||  || ||| |||| |  ||||||||||| ||||| ||||| |||||||| ||||||||||||||    
T  36756481 ccaaaatgatggggggtgggaatatgggaaaaaactgttatgaaagtcgagcttcatcttcaagctccaagtttaatggtgatg 36756398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 85 - 367
Target Start/End: Complemental strand, 36762478 - 36762195
Alignment:
Q  85 ctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgtt 184  Q
    ||||||||| ||| | |||||||||| ||||||||||  ||||| || ||||||||||| |||||  || ||||||| | ||||||| ||||||   |||    
T  36762478 ctttcttccccaattgtataaaattgaaaccctaattacacaatctgcaatctacactctaaaatcacctaaatttcctccaataataagtggtttagtt 36762379  T
Q  185 cttccccaattcaaaaagcttcaaaccctaa-tannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaat 283  Q
    ||||||||||||||||| ||||||||||||| |        ||||||||  |||  |||| ||  ||||||||||| |||||||| | || || |  |||    
T  36762378 cttccccaattcaaaaaacttcaaaccctaatttttttcgtattgaatcataaaaccaaattcctcaaaatttcttgaagcaaaactattgaaataaaat 36762279  T
Q  284 ctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatg 367  Q
    |  |||||||| ||||||||  || ||| |||| |  ||||||||||| ||||| ||||| |||||||| ||||||||||||||    
T  36762278 ccaaaatgatggggggtgggaatatgggaaaaaactgttatgaaagtcgagcttcatcttcaagctccaagtttaatggtgatg 36762195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 86 - 157
Target Start/End: Complemental strand, 19712085 - 19712014
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaa 157  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  19712085 tttcttccccaaatatataaaattggaaccctaattttacaatctgtaatctacactccaaaatttccaaaa 19712014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 85 - 216
Target Start/End: Complemental strand, 36766205 - 36766074
Alignment:
Q  85 ctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgtt 184  Q
    ||||||||| ||| | |||||||||| |||||||||| |||||| || ||||||||||| |||||  || ||||||| | ||||||| ||||||   |||    
T  36766205 ctttcttccccaattgtataaaattgaaaccctaattatacaatctgcaatctacactctaaaatcacctaaatttcctccaataataagtggtttagtt 36766106  T
Q  185 cttccccaattcaaaaagcttcaaaccctaat 216  Q
    ||||||||||||||||| ||||||||||||||    
T  36766105 cttccccaattcaaaaaacttcaaaccctaat 36766074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 40785330 - 40785216
Alignment:
Q  101 tataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttcttccccaattcaaaa 200  Q
    |||||||||| |||||||||| |||||| || |||||||||||||||||  |||||||||| | || |||| ||||||   |||||||||||||||||||    
T  40785330 tataaaattgtaaccctaattgtacaatctgcaatctacactccaaaatcaccaaaatttcctccactaataagtggtccagttcttccccaattcaaaa 40785231  T
Q  201 agcttcaaaccctaa 215  Q
    | |||||||||||||    
T  40785230 atcttcaaaccctaa 40785216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 46810995 - 46811129
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||| | ||| | |||||||||||||| ||||||  ||| | || ||||||||||| |||||  || ||||||| | ||||||| ||||||       
T  46810995 gctctttctttcccaattgtataaaattggaactctaattacacagtctgcaatctacactctaaaatcacctaaatttcctccaataataagtggtcca 46811094  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||||||||| ||||||||||||||    
T  46811095 gttcttccccaattcaaaaaacttcaaaccctaat 46811129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 196
Target Start/End: Complemental strand, 7403590 - 7403476
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||| | ||||| ||| |||||||||||||| ||||||||||||||||||| | ||||||||  |||| ||||||| || |||||  ||  |||    
T  7403590 gctctttctttcccaaatctattaaattggaaccctagttttacaatatgtaatctagagtccaaaatctccaagatttcttccattaattgatgacaac 7403491  T
Q  182 gttcttccccaattc 196  Q
    ||||||| |||||||    
T  7403490 gttcttctccaattc 7403476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 88 - 216
Target Start/End: Original strand, 8421712 - 8421840
Alignment:
Q  88 tcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttctt 187  Q
    |||||| ||| |||||||||||| ||||||||||  ||||| | ||||||||| || || ||  || ||||||| | ||||||| ||||||   ||||||    
T  8421712 tcttccccaattatataaaattgaaaccctaattacacaatctataatctacattctaatatcacctaaatttcctccaataataagtggtccagttctt 8421811  T
Q  188 ccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||| ||| ||||||||||    
T  8421812 ccccaattcaaaaaacttaaaaccctaat 8421840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 19712197 - 19712098
Alignment:
Q  9 agcagagactaatgtggtcgacagtgaccaaaatttccaaggatcaaattaattgatttgtagaaaatgctttgctctttcttcctcaaatatataaaat 108  Q
    ||||||||||||| | |  || |||||||| || ||| |||||  |||||||||||||||| ||||||| ||||| ||||||||| ||||||||||||||    
T  19712197 agcagagactaatttagctgatagtgaccataacttcaaaggactaaattaattgatttgttgaaaatgttttgccctttcttccccaaatatataaaat 19712098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 13036309 - 13036191
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||| |||||||||||| |||||| ||| |||||| ||| ||| | ||| | | |||||| ||||||||||||| || |||||  ||  || |    
T  13036309 ctctttcttccccaaatatataaatttggaatccttattttataatttgtcacctagagttcaaaatccccaaaatttcttccattaattgatgacaaag 13036210  T
Q  183 ttcttccccaattcaaaaa 201  Q
    |||||||||||||||||||    
T  13036209 ttcttccccaattcaaaaa 13036191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 216
Target Start/End: Complemental strand, 45361062 - 45360929
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| ||||||| |||| ||||||||||||| ||| ||| ||| | ||| | | |||||| ||| ||||||||| ||| ||||  ||  ||     
T  45361062 gctctttcttccccaaatat-taaatttggaaccctaatgttataatttgttacctagagttcaaaatcccccaaatttcttacaagaattgatgtcaat 45360964  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||||||||| ||| ||||||||||    
T  45360963 gttcttccccaattcaaaaaacttaaaaccctaat 45360929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 88 - 216
Target Start/End: Original strand, 35342722 - 35342850
Alignment:
Q  88 tcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttctt 187  Q
    |||||| ||| | |||||||||||||||||||||  ||||| | ||||||||| || || ||  || ||||||| | ||||||| ||| ||   ||||||    
T  35342722 tcttccccaattgtataaaattggaaccctaattacacaatctataatctacattctaatatcacctaaatttcctccaataataagtagtccagttctt 35342821  T
Q  188 ccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||| ||| ||||||||||    
T  35342822 ccccaattcaaaaaacttaaaaccctaat 35342850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 84 - 216
Target Start/End: Original strand, 37791965 - 37792097
Alignment:
Q  84 tctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgt 183  Q
    |||||||||| |||||||||||| ||||||||||||| ||| ||| ||| | ||| | | |||||| || |||||||||| |   || |  ||| || ||    
T  37791965 tctttcttccccaaatatataaatttggaaccctaatgttataatttgtcacctagagttcaaaatcccaaaaatttcttccctgaacttatggcaaagt 37792064  T
Q  184 tcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||||||| ||| ||||||||||    
T  37792065 tcttccccaattcaaaaaacttaaaaccctaat 37792097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 217
Target Start/End: Original strand, 23904917 - 23905052
Alignment:
Q  83 ctctttcttcctc-aaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    ||||||||||| | ||||||||||| ||||||||||||| ||| ||| ||| | ||| | | |||||| ||| ||||||||| ||  ||||  ||  ||     
T  23904917 ctctttcttcccccaaatatataaatttggaaccctaatgttataatttgtcaactagagttcaaaatcccccaaatttcttccatgaattgatgtcaat 23905016  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaata 217  Q
    |||||||||||||||||||| ||| |||||||||||    
T  23905017 gttcttccccaattcaaaaaacttaaaaccctaata 23905052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 86 - 216
Target Start/End: Complemental strand, 6605162 - 6605032
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| |||||||||||| ||||||||||||| ||| ||| ||| | ||| | | |||||| ||| ||||||||| ||  ||||  ||  || |||     
T  6605162 tttcttccccaaatatataaatttggaaccctaatgttataatttgttacctagagttcaaaatcccccaaatttcttccatgaattgatgtcaatgttt 6605063  T
Q  186 ttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||||| ||| ||||||||||    
T  6605062 ttccccaattcaaaaaacttaaaaccctaat 6605032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 216
Target Start/End: Complemental strand, 13169435 - 13169302
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| |||||||||||| ||||| ||||||| ||| ||| ||| | ||| | | |||||| ||| ||||||||| ||  ||||  ||  ||     
T  13169435 gctctttcttccccaaatatataaatttgga-ccctaatgttataatttgttacctagagttcaaaatcccccaaatttcttacatgaattgatgtcaat 13169337  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||||||||| ||| ||||||||||    
T  13169336 gttcttccccaattcaaaaaacttaaaaccctaat 13169302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 39857999 - 39858133
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| |||||||||||| | ||||||||||| ||| ||| ||| | ||| | | |||||| ||| ||||||||| ||  ||||  ||  ||     
T  39857999 gctctttcttccccaaatatataaattcggaaccctaatgttataatttgttacctagagttcaaaatcccccaaatttcttacatgaattgatgtcaat 39858098  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    ||||||| |||||||||||| ||| ||||||||||    
T  39858099 gttcttcaccaattcaaaaaacttaaaaccctaat 39858133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 86 - 216
Target Start/End: Original strand, 47384608 - 47384738
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| ||| |||||||| ||||||||||||| ||| ||| ||| | ||| | | |||||| |||||||| |||| ||  ||||  ||  || ||||    
T  47384608 tttcttccccaattatataaatttggaaccctaatgttataatttgtcacctagagttcaaaatccccaaaatgtcttccatgaattgatgtcaaagttc 47384707  T
Q  186 ttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||||| ||| ||||||||||    
T  47384708 ttccccaattcaaaaaacttaaaaccctaat 47384738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 225 - 330
Target Start/End: Complemental strand, 48705499 - 48705396
Alignment:
Q  225 attgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattat 324  Q
    |||||||||||||  || |||| ||| ||||||||||||||||| ||||||| ||||||| ||||||||  ||||||||  || ||||||||  ||||||    
T  48705499 attgaatccgaaaaccagaatctccataatttcttcaagcaaaactgttcaaattgaatccgaaatgat--ggggtgggcatatgggcaaaaagaattat 48705402  T
Q  325 gaaagt 330  Q
     |||||    
T  48705401 caaagt 48705396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 372
Target Start/End: Complemental strand, 40785164 - 40785079
Alignment:
Q  287 aaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgaga 372  Q
    |||||||| ||||||||  || ||  |||| |||||||||||||| |||||  |||| |||||||| |||||||||||||||||||    
T  40785164 aaatgatggggggtgggaatatggaaaaaaacaattatgaaagtcgagcttcttcttcaagctccaagtttaatggtgatgtgaga 40785079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 48850929 - 48851001
Alignment:
Q  144 caaaattcccaaaatttctttcaataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||||||||| || |||||  ||  || |||||||||||||||||||| ||| ||||||||||    
T  48850929 caaaattcccaaaatttcttccattaattgatgccaaagttcttccccaattcaaaaaacttaaaaccctaat 48851001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 12904101 - 12904046
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatcta 138  Q
    ||||||||||  ||||| ||||||||| |||||||||||||||||| |||||||||    
T  12904101 ctctttcttctccaaatctataaaatttgaaccctaattttacaatctgtaatcta 12904046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 48311543 - 48311427
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||| ||||||||||   |||||||| |||||||| ||| ||| | ||| | | |||||| | |||||||||||||| |||||  ||  || |    
T  48311543 ctctttcttccccaaatatatat--ttggaaccttaattttataatttgtcacctagaattcaaaatcctcaaaatttctttcattaattgatgacaaag 48311446  T
Q  183 ttcttccccaattcaaaaa 201  Q
    |||||||||||||||||||    
T  48311445 ttcttccccaattcaaaaa 48311427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 3921007 - 3921096
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataatt 172  Q
    |||||||||||| | ||| |||||||||| |||| ||||| |||||| ||||||||| | | |||||| ||||||||||||| || |||||    
T  3921007 gctctttcttccccgaatctataaaattgaaacc-taattctacaatctgtaatctatagtacaaaatccccaaaatttcttccattaatt 3921096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 273
Target Start/End: Complemental strand, 12904026 - 12903939
Alignment:
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgtt 273  Q
    ||||||||||| |||| | ||||||||||||        |||||| ||||||| |||| || ||||||||||||||||||||||||||    
T  12904026 ttccccaattctaaaaacgtcaaaccctaatttgtttttattgaacccgaaatccaaagtctccaaaatttcttcaagcaaaattgtt 12903939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 216
Target Start/End: Original strand, 38549845 - 38549975
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    ||||||||  ||||||||||| ||||||||||||| ||| ||| ||| | ||| | | |||||| ||||||||||||| ||  ||||  |   || ||||    
T  38549845 tttcttccctaaatatataaatttggaaccctaatgttataatttgtcacctagagttcaaaatccccaaaatttcttccatgaattgataccaaagttc 38549944  T
Q  186 ttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||||| ||| ||| ||||||    
T  38549945 ttccccaattcaaaaaacttaaaatcctaat 38549975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 215
Target Start/End: Complemental strand, 22155626 - 22155495
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||| |||||||||||| |||||||| |||| ||| ||| ||| |  || | | |||||| ||| ||||||||| ||  ||||  ||  || |    
T  22155626 ctctttcttccccaaatatataaa-ttggaaccttaatgttataatttgtcacttagagttcaaaatcccccaaatttcttccatgaattgatgtcaatg 22155528  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaa 215  Q
    ||||||||||||||||||| ||| |||||||||    
T  22155527 ttcttccccaattcaaaaaacttaaaaccctaa 22155495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 215
Target Start/End: Complemental strand, 22211541 - 22211410
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||| |||||||||||| |||||||| |||| ||| ||| ||| |  || | | |||||| ||| ||||||||| ||  ||||  ||  || |    
T  22211541 ctctttcttccccaaatatataaa-ttggaaccttaatgttataatttgtcacttagagttcaaaatcccccaaatttcttccatgaattgatgtcaatg 22211443  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaa 215  Q
    ||||||||||||||||||| ||| |||||||||    
T  22211442 ttcttccccaattcaaaaaacttaaaaccctaa 22211410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 216
Target Start/End: Original strand, 38472573 - 38472705
Alignment:
Q  84 tctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgt 183  Q
    ||||| |||| |||||||||||| |||||||| |||| ||| ||| ||| | ||| | | |||||| |||  |||||||| ||  ||||  ||  || ||    
T  38472573 tctttattccccaaatatataaatttggaaccttaatgttataatttgtcacctagagttcaaaatcccccgaatttcttccatgaattgatgtcaatgt 38472672  T
Q  184 tcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||||||| ||| ||||||||||    
T  38472673 tcttccccaattcaaaaaacttaaaaccctaat 38472705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 214
Target Start/End: Original strand, 34775362 - 34775493
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    |||||||||||  ||||||||||| ||||||||||||| ||| ||| ||| | ||| | | ||||||  || ||||||||| ||  ||||  ||  || |    
T  34775362 ctctttcttccctaaatatataaatttggaaccctaatgttataatttgttacctagagttcaaaatctcccaaatttcttacatgaattgatgtcaatg 34775461  T
Q  183 ttcttccccaattcaaaaagcttcaaacccta 214  Q
    ||||||||||||||| ||| ||| ||||||||    
T  34775462 ttcttccccaattcagaaaacttaaaacccta 34775493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 303
Target Start/End: Original strand, 8421867 - 8421921
Alignment:
Q  249 caaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtggg 303  Q
    ||||||||||| ||||||||   || || ||||||||||||||||||||||||||    
T  8421867 caaaatttcttgaagcaaaacgcttgaaattgaatctgaaatgatgaggggtggg 8421921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 34784243 - 34784289
Alignment:
Q  31 agtgaccaaaatttccaaggatcaaattaattgatttgtagaaaatg 77  Q
    |||||||||||||||||||||  ||||| ||||||||| ||||||||    
T  34784243 agtgaccaaaatttccaaggacgaaattgattgatttgcagaaaatg 34784289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 27956988 - 27956933
Alignment:
Q  94 tcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaatt 150  Q
    ||||||||||||| ||||||| ||||||  ||||| || ||||||||||||||||||    
T  27956988 tcaaatatataaa-ttggaactctaattacacaatctgcaatctacactccaaaatt 27956933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 48227743 - 48227707
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaa 119  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  48227743 ctctttcttccccaaatatataaatttggaaccctaa 48227707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 136; Significance: 8e-71; HSPs: 47)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 9 - 216
Target Start/End: Original strand, 11031621 - 11031828
Alignment:
Q  9 agcagagactaatgtggtcgacagtgaccaaaatttccaaggatcaaattaattgatttgtagaaaatgctttgctctttcttcctcaaatatataaaat 108  Q
    ||||||||||||| ||| ||| |||||||||||||||||||||  ||||| ||||||||| | |||||| |||||| |||||||| ||||||||||||||    
T  11031621 agcagagactaatttggccgatagtgaccaaaatttccaaggactaaatttattgatttgcataaaatgttttgctttttcttccccaaatatataaaat 11031720  T
Q  109 tggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttcttccccaattcaaaaagcttcaa 208  Q
    ||||| |||||||||||||| | |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||    
T  11031721 tggaagcctaattttacaatctataatctacactccaaaatccccaaaatttcttccaataattagtggtaacgttcttccctaattcaaaaaacttcaa 11031820  T
Q  209 accctaat 216  Q
    ||||||||    
T  11031821 accctaat 11031828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 86 - 386
Target Start/End: Original strand, 40019448 - 40019748
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||  ||||| |||||| |||||||||  ||| ||||||    
T  40019448 tttcttccccaaatatataaaattggaaccctaattttacaatgtgtaatctacaccccaaaatctccaaattttcttccaataattaagggtcacgttc 40019547  T
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatct 285  Q
    |||||||| |||||||  | |||||||||||        |||||||| ||||  |||||||  |||||||  ||||||||||| |||| || ||||||||    
T  40019548 ttccccaaatcaaaaaattgcaaaccctaattttttttaattgaatctgaaaaccaaaatctgcaaaattcattcaagcaaaactgttgaaattgaatct 40019647  T
Q  286 gaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgtt 385  Q
     |||||||| | |||||   || ||||||||  |  ||| |||||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||||    
T  40019648 aaaatgatgggaggtggtcatatgggcaaaaagagctatcaaagtcaagcttcatcttcatcctccatgtttaatggtgatgtgagagtgcttgaatgtt 40019747  T
Q  386 g 386  Q
    |    
T  40019748 g 40019748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 83 - 294
Target Start/End: Original strand, 25356622 - 25356834
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||| ||||||||||||| |||||| |||||| ||| |||||||||||||||||||||||  |||||||||||| ||||||| ||||||||||    
T  25356622 ctctttcttccccaaatatataaaactggaactctaattatactatatgtaatctacactccaaaatcaccaaaatttcttccaataataagtggtaacg 25356721  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaa-tannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 281  Q
    ||||||||||||||||||| ||||||||||||| |        |||||||| ||||| ||||||| |||||||||||| |||||||| | || || ||||    
T  25356722 ttcttccccaattcaaaaaacttcaaaccctaatttcttttttattgaatctgaaatccaaaatccccaaaatttcttgaagcaaaactattgaaattga 25356821  T
Q  282 atctgaaatgatg 294  Q
    ||| |||||||||    
T  25356822 atcagaaatgatg 25356834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 82 - 392
Target Start/End: Original strand, 33369050 - 33369362
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| |||||||||||||||||||||||||||  | ||| || |||||||||||||||||  |||||| ||||| ||||||| ||||||       
T  33369050 gctctttcttccccaaatatataaaattggaaccctaattacataatctgcaatctacactccaaaatcaccaaaacttcttccaataataagtggtcca 33369149  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaa--tannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaattt 279  Q
    |||||||||||||||||||| |||||||||| ||  |        |||||||| ||||  ||||||  |||||| ||||| |||||||| | || || ||    
T  33369150 gttcttccccaattcaaaaaacttcaaacccgaattttttttcttattgaatctgaaagccaaaattcccaaaacttcttgaagcaaaactattgaaatt 33369249  T
Q  280 gaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttg 379  Q
    ||||||||||||||| |  |||||  || | | |||| |  ||||||||||  ||||||||||| ||||||||  ||||||||||||||||||| |||||    
T  33369250 gaatctgaaatgatgggacgtgggaatatgagaaaaaacggttatgaaagttgagctttatcttcaagctccaaatttaatggtgatgtgagagcgcttg 33369349  T
Q  380 aatgttgatgtcc 392  Q
    ||||||| |||||    
T  33369350 aatgttggtgtcc 33369362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 95 - 386
Target Start/End: Original strand, 28432520 - 28432810
Alignment:
Q  95 caaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttcttccccaat 194  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||| |||||| |||||||||  ||| ||||||||||||||     
T  28432520 caaatatataaaattggaaccctaattttacaatgtgtaatctacactccaaaatctccaaattttcttccaataattaagggtcacgttcttccccaaa 28432619  T
Q  195 tcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatg 294  Q
    |||||||  | |||||| || |        |||||||| ||||  |||||||  |||||||  ||||||||||  |||| || |||||||| ||||||||    
T  28432620 tcaaaaaattgcaaaccgtatttttttttaattgaatctgaaaaccaaaatctacaaaattcattcaagcaaatctgttgaaattgaatctaaaatgatg 28432719  T
Q  295 aggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttg 386  Q
     |||||||   || ||||||||  |  ||  ||||||||| || ||||| |  |||||||||||||||||||||||||||||||||||||||    
T  28432720 -ggggtggtcatatgggcaaaaagagctaccaaagtcaagtttcatcttcatcctccatgtttaatggtgatgtgagagtgcttgaatgttg 28432810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 83 - 392
Target Start/End: Complemental strand, 9876361 - 9876053
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||| ||| | |||||||||| |||||||||| |||||| || ||||||||||| | |||  | |||||||| | ||||||| ||||||   |    
T  9876361 ctctttcttccccaattgtataaaattgaaaccctaattatacaatctgcaatctacactctataatcacaaaaatttcctccaataataagtggtccag 9876262  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaa 282  Q
    |||| |||||||||||||| ||||||||||||||        | |||||| ||||  |||||||  |||||||| || |||||||| | || || |||||    
T  9876261 ttctgccccaattcaaaaaacttcaaaccctaattttttcgtagtgaatctgaaagccaaaatcctcaaaattttttgaagcaaaactattgaaattgaa 9876162  T
Q  283 tctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaat 382  Q
    |||||||||||| ||||||||  || ||| |||| |  ||||||||||||||||| ||||| | |||||| ||||||||||  ||||||| |||||||||    
T  9876161 tctgaaatgatg-ggggtgggaatatgggaaaaaactgttatgaaagtcaagcttcatcttcaggctccaagtttaatggtattgtgagaatgcttgaat 9876063  T
Q  383 gttgatgtcc 392  Q
    |||| |||||    
T  9876062 gttggtgtcc 9876053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 86 - 216
Target Start/End: Complemental strand, 10269336 - 10269206
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||| | ||||||||||||||||||| |||||||||||||| |  ||||||||| ||||||| ||||||||||||| |||||||||||||||||||||    
T  10269336 tttctttcccaaatatataaaattggaagcctaattttacaatctacaatctacacaccaaaatccccaaaatttcttccaataattagtggtaacgttc 10269237  T
Q  186 ttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||||| |||||||| |||||    
T  10269236 ttccccaattcaaaaaacttcaaacgctaat 10269206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 82 - 372
Target Start/End: Original strand, 461467 - 461756
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||||||| | |||||||||| ||||||||||  ||||| |  |||||||||||||||||  |||||||||| | |  |||| ||||||       
T  461467 gctctttcttcctcaattgtataaaattgtaaccctaattacacaatctccaatctacactccaaaatcaccaaaatttcctcctgtaataagtggtcca 461566  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 281  Q
    |||||||||||||||||||| |||||||||||||         |||||||| |||| ||||||||  |||||||| || || ||||| | || || ||||    
T  461567 gttcttccccaattcaaaaatcttcaaaccctaactttttcgcattgaatctgaaagtcaaaatcctcaaaattt-ttgaaacaaaactattgaaattga 461665  T
Q  282 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgaga 372  Q
    ||||||||||||| || |||||  || ||| | || || ||||||||||| ||||| ||||| |||||||| |||||||||||||||||||    
T  461666 atctgaaatgatggggtgtgggaatatgggaagaaacagttatgaaagtcgagcttcatcttcaagctccaagtttaatggtgatgtgaga 461756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 86 - 372
Target Start/End: Original strand, 33158951 - 33159236
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| ||| | |||||||||| ||||||||||  ||||| || |||||||||||||||||  |||||||||| | || |||| ||||||   ||||    
T  33158951 tttcttccccaattgtataaaattgtaaccctaattacacaatctgcaatctacactccaaaatcaccaaaatttcctccagtaataagtggttcggttc 33159050  T
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatct 285  Q
    |||||||||||||||| |||||||||||||         |||||||| |||| ||||||||  |||| ||| || |||||||| | || || ||||||||    
T  33159051 ttccccaattcaaaaatcttcaaaccctaactttttcgcattgaatctgaaagtcaaaatcctcaaatttttttgaagcaaaactattgaaattgaatct 33159150  T
Q  286 gaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgaga 372  Q
    ||||||||  ||||||||  | | || ||||||| ||||||||||| ||||| ||||| || ||||| |||||||||||||||||||    
T  33159151 gaaatgatagggggtgggaat-atggaaaaagcagttatgaaagtcgagcttcatcttcaaactccaagtttaatggtgatgtgaga 33159236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 86 - 216
Target Start/End: Complemental strand, 9186432 - 9186302
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| ||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| ||  ||||||||| |||||||||||| ||||||||    
T  9186432 tttcttccccaaatatttaaaattgaaaccctaattttacaatctgtaatctacactccaaaatcccataaatttcttccaataattagtgataacgttc 9186333  T
Q  186 ttccccaattcaaaaagcttcaaaccctaat 216  Q
    || ||||||||||||| ||| ||||||||||    
T  9186332 ttacccaattcaaaaaactttaaaccctaat 9186302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 83 - 381
Target Start/End: Original strand, 38881691 - 38881992
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||| ||||||||||||||||||||| |||||  |||||||| ||| ||||||||||||   || ||||||||| ||||||| ||||||   |    
T  38881691 ctctttcttccccaaatatataaaattggaaccttaattacacaatatgcaatgtacactccaaaaccacccaaatttcttccaataataagtggtccag 38881790  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaa 282  Q
    ||||||||||||||||||| ||| ||||||||||          | | ||  |||  |||||||  ||||||||||| |||||||| | || || |||||    
T  38881791 ttcttccccaattcaaaaaacttgaaaccctaattttttttttcttattctaaaagccaaaatcctcaaaatttcttgaagcaaaactattgaaattgaa 38881890  T
Q  283 tctgaaatgatgagg-ggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatg--tgagagtgcttg 379  Q
    |||||||||||| || |||| |  || ||| |||| |||||||||||||| ||||| ||||| |||||||| |||||| |||||||  ||||||||||||    
T  38881891 tctgaaatgatggggaggtgagaatatgggaaaaaacaattatgaaagtcgagcttcatcttcaagctccaagtttaacggtgatgtatgagagtgcttg 38881990  T
Q  380 aa 381  Q
    ||    
T  38881991 aa 38881992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 86 - 216
Target Start/End: Original strand, 10268093 - 10268223
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| |||||||||| |||||||||||||||||| |||| | |||||||||||||||||| ||| ||||||||| ||||||||||| ||||| |||    
T  10268093 tttcttccccaaatatatagaattggaaccctaatttttcaatctataatctacactccaaaatcccccaaatttcttccaataattagtagtaacattc 10268192  T
Q  186 ttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||  ||| | ||||||||||||||    
T  10268193 ttccccaatgtaaataacttcaaaccctaat 10268223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 86 - 316
Target Start/End: Complemental strand, 44620472 - 44620244
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| ||||| |||||||||| ||||||||||||||||| | ||||| |||||||||||||| ||||| ||||| |||||||||||||||| ||||    
T  44620472 tttcttccccaaatgtataaaattgaaaccctaattttacaatctttaatccacactccaaaattcacaaaaattcttccaataattagtggtaatgttc 44620373  T
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaat-tcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatc 284  Q
    || ||||||| ||| | | ||||||||||||        ||||||| | ||||   |||||| |||||||| |||||| ||||| ||||  | |||||||    
T  44620372 tt-cccaattgaaataacctcaaaccctaat-ttttttgattgaattcaaaataaaaaaatctccaaaattccttcaaacaaaactgttgtaattgaatc 44620275  T
Q  285 tgaaatgatgaggggtgggtgtaagggcaaaa 316  Q
    |||||||||| ||||||||||||  |||||||    
T  44620274 tgaaatgatg-ggggtgggtgtatcggcaaaa 44620244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 82 - 367
Target Start/End: Complemental strand, 1322115 - 1321829
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    ||||| |||||| ||| | |||||||||||||||||||||  ||||| || |||||||| || |||||  || ||||||| | ||||||| ||||||       
T  1322115 gctctgtcttccccaattgtataaaattggaaccctaattacacaatctgcaatctacattctaaaatcacctaaatttcctccaataataagtggttca 1322016  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaa-tannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttg 280  Q
    |||||||||||||||||||| ||| ||||||||| |        |||||||  ||||  |||||||  ||||||||||| |||||||| | || || |||    
T  1322015 gttcttccccaattcaaaaaacttgaaaccctaatttttttcgtattgaatatgaaagccaaaatccacaaaatttcttgaagcaaaactattgaaattg 1321916  T
Q  281 aatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatg 367  Q
    |||||||||||| | ||||||||  || ||| ||||    ||||||||||| ||||| ||||| |||||||| ||||||||||||||    
T  1321915 aatctgaaatgaaggggggtgggaatatgggaaaaaattgttatgaaagtcgagcttcatcttcaagctccaagtttaatggtgatg 1321829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 82 - 214
Target Start/End: Original strand, 10770636 - 10770768
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| ||||| |||||||||||| ||||||||||||||| |||||||  ||||||||||| |||||||||||||| | |||||| ||  |||    
T  10770636 gctctttcttccccaaatctataaaattggagccctaattttacaatctgtaatccgcactccaaaatccccaaaatttctttaattaattaatgacaac 10770735  T
Q  182 gttcttccccaattcaaaaagcttcaaacccta 214  Q
    ||| |||| |||||| |||| ||||||||||||    
T  10770736 gtttttcctcaattctaaaaacttcaaacccta 10770768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 83 - 188
Target Start/End: Complemental strand, 25373440 - 25373335
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||||||||||||| ||||||||||||| ||| | | |||||||||||||||||||||||  |||||||||||| ||||||| ||| |||||     
T  25373440 ctctttcttcctcaaatatatgaaattggaaccctgattgtgctatatgtaatctacactccaaaataaccaaaatttcttccaataataagtagtaaca 25373341  T
Q  183 ttcttc 188  Q
    ||||||    
T  25373340 ttcttc 25373335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 25705571 - 25705652
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctt 163  Q
    |||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||  ||||||||||||    
T  25705571 gctctttcttccccaaatatataaaattggaaccctaattatactatatgtaatctacactccaaaatcaccaaaatttctt 25705652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 82 - 337
Target Start/End: Original strand, 42895061 - 42895317
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| ||| | ||||| |||||||||||||||  ||||| || ||| ||||||| |||||  ||||||| |||| |||| || | ||||       
T  42895061 gctctttcttccccaattgtataacattggaaccctaattacacaatctgcaatttacactctaaaatcaccaaaatatcttccaattataaatggtcca 42895160  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaa-tannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttg 280  Q
    |||||||||||||||||||| ||||||||||||| |        |||||||  ||||  |||||||  ||||||||||| |||||||| | || || |||    
T  42895161 gttcttccccaattcaaaaaacttcaaaccctaatttttttcgtattgaatttgaaagccaaaatcctcaaaatttcttgaagcaaaactattgaaattg 42895260  T
Q  281 aatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctt 337  Q
    |||||||||||||| ||||||||  || ||| |||| || | ||||||||| |||||    
T  42895261 aatctgaaatgatggggggtgggaatatgggaaaaaacagtcatgaaagtcgagctt 42895317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 86 - 216
Target Start/End: Original strand, 15684048 - 15684178
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| ||||| |||||||||||||||| ||||||||||| ||||||||| | | ||||||||| |||||||||| || |||||  ||  |||||||    
T  15684048 tttcttccccaaatctataaaattggaaccccaattttacaatctgtaatctagagttcaaaattccaaaaatttcttccattaattgatgacaacgttc 15684147  T
Q  186 ttccccaattcaaaaagcttcaaaccctaat 216  Q
    ||||||||||| ||||  |||||| ||||||    
T  15684148 ttccccaattctaaaaatttcaaaacctaat 15684178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 83 - 189
Target Start/End: Complemental strand, 25402610 - 25402504
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||| |||||||||||||||| |||||| ||| ||| || ||||||||||||||||||||  |||||||||||| ||||||| ||| |||||     
T  25402610 ctctttcttccccaaatatataaaattgaaaccctgattgtactatctgtaatctacactccaaaataaccaaaatttcttccaataataagtagtaaca 25402511  T
Q  183 ttcttcc 189  Q
    |||||||    
T  25402510 ttcttcc 25402504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 83 - 189
Target Start/End: Complemental strand, 25707119 - 25707013
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||| |||||||||||||||| |||||| ||| ||| || ||||||||||||||||||||  |||||||||||| ||||||| ||| |||||     
T  25707119 ctctttcttccccaaatatataaaattgaaaccctgattgtactatctgtaatctacactccaaaataaccaaaatttcttccaataataagtagtaaca 25707020  T
Q  183 ttcttcc 189  Q
    |||||||    
T  25707019 ttcttcc 25707013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 111 - 216
Target Start/End: Original strand, 12515395 - 12515499
Alignment:
Q  111 gaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttcttccccaattcaaaaagcttcaaac 210  Q
    ||||| |||||||||||| | |||||||||||||||||| ||||||||||| |||  ||||||| | |||||||||||||| ||||||||| ||||||||    
T  12515395 gaaccgtaattttacaatctttaatctacactccaaaatccccaaaatttc-ttccctaattagcgataacgttcttccccgattcaaaaaacttcaaac 12515493  T
Q  211 cctaat 216  Q
    ||||||    
T  12515494 cctaat 12515499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 82 - 201
Target Start/End: Original strand, 11719746 - 11719865
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| ||||| |||||||||||||||| ||||||||||| | | | ||| | |||||||| ||||||||||||| || |||||  ||  |||    
T  11719746 gctctttcttccccaaatctataaaattggaaccccaattttacaatttatcacctagagtccaaaatccccaaaatttcttccattaattgatgacaac 11719845  T
Q  182 gttcttccccaattcaaaaa 201  Q
    ||||||||||||||||||||    
T  11719846 gttcttccccaattcaaaaa 11719865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 25370798 - 25370865
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaat 149  Q
    |||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  25370798 gctctttcttccccaaatatataaaattggaaccctaattatactatatgtaatctacactccaaaat 25370865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 249 - 392
Target Start/End: Original strand, 33748793 - 33748935
Alignment:
Q  249 caaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagc 348  Q
    ||||||||||| |||||||| | || || ||||||||||||||||| ||||||||  || ||  |||| |  |||||||||||||| || ||||| ||||    
T  33748793 caaaatttcttgaagcaaaactattgaaattgaatctgaaatgatgtggggtgggaatatggaaaaaa-cggttatgaaagtcaagtttcatcttcaagc 33748891  T
Q  349 tccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 392  Q
    |||| ||||||| ||| ||||||||||||||||||||| |||||    
T  33748892 tccaagtttaatagtgttgtgagagtgcttgaatgttggtgtcc 33748935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 9186544 - 9186447
Alignment:
Q  9 agcagagactaatgtggtcgacagtgaccaaaatttccaaggatcaaattaattgatttgtagaaaatgctttgctctttcttcctcaaatatataaa 106  Q
    ||||||||||||| ||| ||| |||||||||||||||||| ||  ||||| ||||||||| ||||||||  |||||||||||||| ||||||||||||    
T  9186544 agcagagactaatttggccgatagtgaccaaaatttccaatgactaaattgattgatttgcagaaaatgacttgctctttcttccccaaatatataaa 9186447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 17807313 - 17807446
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||| |||||||||||| ||||||||||||||||| ||| ||| | ||| | | |||||| ||||||| ||||| || |||||  ||  |||     
T  17807313 ctctttcttccacaaatatataaatttggaaccctaattttataatttgtcacctagagttcaaaatccccaaaaattcttccattaattgatgacaaca 17807412  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    ||||||||||||||||||| ||||||| ||||||    
T  17807413 ttcttccccaattcaaaaaacttcaaaacctaat 17807446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 82 - 392
Target Start/End: Complemental strand, 31823276 - 31822975
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| ||| | |||||||||||||||||||||  ||||| || ||||||||||| | |||    |||||||| |  |||||||||||||       
T  31823276 gctctttcttccccaattgtataaaattggaaccctaattacacaatctgcaatctacactctataatcatgaaaatttcctcaaataattagtggttca 31823177  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaa--tannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaattt 279  Q
    ||||| |||||||||||||| |||||||||||||  |        | ||||||  |||  |||||||  ||||||||||| |||||||| | || || ||    
T  31823176 gttctgccccaattcaaaaaacttcaaaccctaattttttttcgtagtgaatctaaaagccaaaatcctcaaaatttcttgaagcaaaactattgaa-tt 31823078  T
Q  280 gaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttg 379  Q
    ||||||||||||||| ||||||||  || ||| |||| |  ||||||||          ||||| || ||||| ||||||||||| ||||||||||||||    
T  31823077 gaatctgaaatgatgtggggtgggaatatgggaaaaaacggttatgaaa----------atcttcaaactccaagtttaatggtgttgtgagagtgcttg 31822988  T
Q  380 aatgttgatgtcc 392  Q
    ||||||| |||||    
T  31822987 aatgttggtgtcc 31822975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 85 - 216
Target Start/End: Complemental strand, 11790627 - 11790496
Alignment:
Q  85 ctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgtt 184  Q
    ||||||||||||||| ||||||| ||||||| | |||||||||| ||| ||||| | |||||||| ||||||||||||| || |||||  ||  ||| ||    
T  11790627 ctttcttcctcaaatctataaaaatggaaccttgattttacaatttgttatctatagtccaaaatccccaaaatttcttccattaattgatgacaacctt 11790528  T
Q  185 cttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||| ||||| |||| ||||||| ||||||    
T  11790527 cttcccaaattctaaaaacttcaaaacctaat 11790496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 216
Target Start/End: Complemental strand, 32824072 - 32823938
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| ||| | | |||||||||||||||||||  ||||| || ||||||||||  |||||  || ||||||| | ||||||| ||||||       
T  32824072 gctctttcttccccaattgtttaaaattggaaccctaattacacaatctgcaatctacactataaaatcgcctaaatttcctccaataataagtggttca 32823973  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    ||| |||||||||||||||| ||||||||||||||    
T  32823972 gtttttccccaattcaaaaaacttcaaaccctaat 32823938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 225 - 370
Target Start/End: Complemental strand, 25371781 - 25371636
Alignment:
Q  225 attgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattat 324  Q
    |||||||| ||||| |||||||   ||||||| ||  ||||||| | || || ||||||| ||||||||||||||||||  || ||| |||| || ||||    
T  25371781 attgaatctgaaatccaaaatccaaaaaatttattgcagcaaaactattgaaattgaatccgaaatgatgaggggtgggcatatgggaaaaaacagttat 25371682  T
Q  325 gaaagtcaagctttatctttaagctccatgtttaatggtgatgtga 370  Q
    ||| ||| ||||| ||||| |||||||| |||||||||||||||||    
T  25371681 gaatgtcgagcttcatcttcaagctccaagtttaatggtgatgtga 25371636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 82 - 201
Target Start/End: Original strand, 24527184 - 24527303
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    ||||| |||||| ||| | |||||||||||||||||||||  ||||| || |||||||| || |||||  || ||||||| | ||||||| ||||||       
T  24527184 gctctatcttccccaattgtataaaattggaaccctaattacacaatctgcaatctacattctaaaatcacctaaatttcctccaataataagtggtcca 24527283  T
Q  182 gttcttccccaattcaaaaa 201  Q
    ||||||||||||||||||||    
T  24527284 gttcttccccaattcaaaaa 24527303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 37525149 - 37525267
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    ||||||| |||| ||| | |||||||||| ||||||||||  ||||| |  |||||||||||||||||  |||||||||| | || |||| ||||||       
T  37525149 gctctttattccccaattgtataaaattgtaaccctaattgcacaatcttcaatctacactccaaaatcaccaaaatttcctccactaataagtggttca 37525248  T
Q  182 gttcttccccaattcaaaa 200  Q
    |||||||||||||||||||    
T  37525249 gttcttccccaattcaaaa 37525267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 41041032 - 41041166
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| |||||||||||| ||||||||||||| ||| ||| ||| | ||| | | |||||| ||| ||||||||| ||  ||||  ||  ||     
T  41041032 gctctttcttccccaaatatataaatttggaaccctaatgttataatttgtcacctagagttcaaaatcccccaaatttcttccatgaattgatgtcaat 41041131  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||||||| | ||| ||||||||||    
T  41041132 gttcttccccaattcaaataacttaaaaccctaat 41041166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 13484831 - 13484964
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||| |||||||||||| |||||||| |||| ||| ||| ||| | ||| | | |||||| ||| ||||||||| ||  ||||  ||  || |    
T  13484831 ctctttcttccccaaatatataaatttggaaccttaatgttataatttgtcacctagagttcaaaatcccccaaatttcttccatgaattgatgtcaatg 13484930  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    ||||||||||||||||||| ||| ||||||||||    
T  13484931 ttcttccccaattcaaaaaacttaaaaccctaat 13484964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 372
Target Start/End: Original strand, 37525333 - 37525418
Alignment:
Q  287 aaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgaga 372  Q
    |||||||| ||||||||  || ||| |||| || ||||||||||| ||||| ||||| |||||||| |||||||||||||||||||    
T  37525333 aaatgatggggggtgggaatatgggaaaaaacagttatgaaagtcgagcttcatcttcaagctccaagtttaatggtgatgtgaga 37525418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 294
Target Start/End: Complemental strand, 8655752 - 8655640
Alignment:
Q  182 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 281  Q
    |||||||||||||||||||| ||| ||||||||||        |||||||| ||||  |||||||  ||||||||||| |||||||| | || || ||||    
T  8655752 gttcttccccaattcaaaaaacttgaaaccctaattttttcgtattgaatctgaaagccaaaatccacaaaatttcttgaagcaaaactattgaaattga 8655653  T
Q  282 atctgaaatgatg 294  Q
    |||||||||||||    
T  8655652 atctgaaatgatg 8655640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 41824261 - 41824394
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||| |||||||||| | ||| ||||||||| ||| ||| ||| |  || | | |||||| ||||||||||||| ||  ||||  ||  || |    
T  41824261 ctctttcttccccaaatatatatatttgaaaccctaatgttataatttgtcacgtagagttcaaaatccccaaaatttcttccatgaattgatgtcaaag 41824360  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    ||||||||||||||||||| ||| ||||||||||    
T  41824361 ttcttccccaattcaaaaaacttaaaaccctaat 41824394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 10267998 - 10268086
Alignment:
Q  9 agcagagactaatgtggtcgacagtgaccaaaatttccaaggatcaaattaattgatttgtagaaaatgctttgctctttcttcctcaa 97  Q
    ||||||||||||| |||  || |||||||| ||||||||| ||  ||||| ||||||||   ||||||| |||||||||||||||||||    
T  10267998 agcagagactaatttggctgatagtgaccataatttccaatgactaaattgattgatttactgaaaatgttttgctctttcttcctcaa 10268086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 88 - 216
Target Start/End: Original strand, 31199781 - 31199909
Alignment:
Q  88 tcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttctt 187  Q
    |||||| ||| | |||||||||||||||||||||  ||||| | ||||||||| || || ||  || ||||||| | ||||||| ||||||   ||||||    
T  31199781 tcttccccaattgtataaaattggaaccctaattacacaatctataatctacattctaatatcacctaaatttcctccaataataagtggtccagttctt 31199880  T
Q  188 ccccaattcaaaaagcttcaaaccctaat 216  Q
    || |||||||| || ||| ||||||||||    
T  31199881 cctcaattcaacaaacttaaaaccctaat 31199909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 216
Target Start/End: Original strand, 33748644 - 33748759
Alignment:
Q  101 tataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttcttccccaattcaaaa 200  Q
    ||||||||||||||| |||||  ||||| || ||||||||||| | |||    |||||||| | ||||||| ||||||   ||||| |||||||||||||    
T  33748644 tataaaattggaaccttaattacacaatctgcaatctacactctataatcatgaaaatttcctccaataataagtggttcagttctgccccaattcaaaa 33748743  T
Q  201 agcttcaaaccctaat 216  Q
    |  |||||||||||||    
T  33748744 aaattcaaaccctaat 33748759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 392
Target Start/End: Original strand, 11719994 - 11720047
Alignment:
Q  339 atctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 392  Q
    ||||| |||||| ||| ||||||||||||||||||| ||||||||||| |||||    
T  11719994 atcttcaagctctatgcttaatggtgatgtgagagtacttgaatgttggtgtcc 11720047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 22273668 - 22273535
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||| |||||||||||| ||||||||||||| ||| ||| ||| | ||| | | ||||||  || ||||||||| ||  ||||  ||  || |    
T  22273668 ctctttcttccccaaatatataaatttggaaccctaatgttataatttgtcacctagagttcaaaatctcccaaatttcttccatgaattgatgtcaatg 22273569  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||||| || ||| ||| ||||||    
T  22273568 ttcttccccaattcaagaaacttaaaatcctaat 22273535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 216
Target Start/End: Complemental strand, 29694095 - 29693963
Alignment:
Q  84 tctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgt 183  Q
    |||||||||| |||||||||||| ||||||||||||| ||| ||| ||| | ||| | | |||||| | ||| ||||||| ||  ||||  ||  || ||    
T  29694095 tctttcttccccaaatatataaatttggaaccctaatgttataatttgtcacctagagttcaaaatccgcaagatttcttccatgaattgatgacaaagt 29693996  T
Q  184 tcttccccaattcaaaaagcttcaaaccctaat 216  Q
    ||||| |||||| ||||| ||| ||||||||||    
T  29693995 tcttctccaatttaaaaaacttaaaaccctaat 29693963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 367
Target Start/End: Complemental strand, 32823863 - 32823816
Alignment:
Q  320 attatgaaagtcaagctttatctttaagctccatgtttaatggtgatg 367  Q
    |||||||||||| ||||||||||| ||||| || ||||||||||||||    
T  32823863 attatgaaagtcgagctttatcttcaagcttcaagtttaatggtgatg 32823816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 392
Target Start/End: Complemental strand, 11790370 - 11790317
Alignment:
Q  339 atctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 392  Q
    ||||| |||||| || || ||||||||||||||||| ||||||||||| |||||    
T  11790370 atcttcaagctctatcttgaatggtgatgtgagagtacttgaatgttggtgtcc 11790317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 386
Target Start/End: Original strand, 42895321 - 42895353
Alignment:
Q  354 gtttaatggtgatgtgagagtgcttgaatgttg 386  Q
    ||||||||||| |||||||||||||||||||||    
T  42895321 gtttaatggtgttgtgagagtgcttgaatgttg 42895353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 5e-66; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 82 - 390
Target Start/End: Original strand, 26448037 - 26448342
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||| | ||||| |||||||||  || |||||||||| |||||||||||||||||    
T  26448037 gctctttcatcctcaaatatataaaattggaaccttaattttacaatattttatctatactccaaaa-ccctaaaatttcttccaataattagtggtaac 26448135  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 281  Q
    || ||| | ||||||||||| ||||||||||||||        ||||||||  |||  || |||  ||||||||||||||||||||| ||||||| ||||    
T  26448136 gtcctttctcaattcaaaaaacttcaaaccctaat-tttttttattgaatctaaaaaccagaatacccaaaatttcttcaagcaaaactgttcaaattga 26448234  T
Q  282 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaa 381  Q
    |||||||||||||| |||||||  || ||||| ||  | |||| |||||||||||| | ||| ||||||||| ||||||||||||||||||||| |||||    
T  26448235 atctgaaatgatga-gggtgggcatatgggcacaaagagttatcaaagtcaagcttcaccttcaagctccatctttaatggtgatgtgagagtgtttgaa 26448333  T
Q  382 tgttgatgt 390  Q
    |||||||||    
T  26448334 tgttgatgt 26448342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 84 - 304
Target Start/End: Original strand, 30501391 - 30501610
Alignment:
Q  84 tctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgt 183  Q
    |||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30501391 tctttcttcctccaatatataaaattggaaccctaattttacaatctttaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgt 30501490  T
Q  184 tcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaat 283  Q
     ||||||||||||||||| |  |||||||| ||        ||||||||||||| ||| | || | ||||||||||||||||||| ||||||| ||||||    
T  30501491 acttccccaattcaaaaaaccccaaaccct-atttttttttattgaatccgaaaatcagattccctaaaatttcttcaagcaaaactgttcaaattgaat 30501589  T
Q  284 ctgaaatgatgaggggtgggt 304  Q
    |||||||||||  ||||||||    
T  30501590 ctgaaatgatggtgggtgggt 30501610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 86 - 290
Target Start/End: Complemental strand, 40963184 - 40962981
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40963184 tttcttccccaaatatataaaattggaaccctaattttacaatctttaatctacactccaaaattcccaaaatttcttacaataattagtggtaacgttc 40963085  T
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatct 285  Q
    ||||||||||||||||  |||||||||||||        ||||||||||||   || ||||  |||||||||||||||||||||||||||| ||||||||    
T  40963084 ttccccaattcaaaaaaattcaaaccctaat-tttttttattgaatccgaataccagaatccacaaaatttcttcaagcaaaattgttcaaattgaatct 40962986  T
Q  286 gaaat 290  Q
    |||||    
T  40962985 gaaat 40962981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 84 - 392
Target Start/End: Complemental strand, 1847462 - 1847154
Alignment:
Q  84 tctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgt 183  Q
    |||||||||| ||||| |||||||||||||||||||||  ||||| ||||||||||||| ||||||  |||||||||| | ||||||  | ||||   ||    
T  1847462 tctttcttccccaaatgtataaaattggaaccctaattacacaatttgtaatctacacttcaaaatcaccaaaatttcatccaataaaaaatggttcagt 1847363  T
Q  184 tcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaat 283  Q
    |||||||||||| ||||| || |||||||||||        |||||||  ||||  |||||||  ||||||||||| |||||||| | || |  ||||||    
T  1847362 tcttccccaatttaaaaaactacaaaccctaattttttcgtattgaatttgaaagccaaaatcctcaaaatttcttgaagcaaaactattgatattgaat 1847263  T
Q  284 ctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatg 383  Q
    ||||||||||| ||||||||  || ||| |||| || ||||||||||| ||||| ||||| |||||||| |||||||||||||||||||| |||||||||    
T  1847262 ctgaaatgatggggggtgggaatatgggaaaaaacagttatgaaagtcgagcttcatcttcaagctccaagtttaatggtgatgtgagagagcttgaatg 1847163  T
Q  384 ttgatgtcc 392  Q
    ||| |||||    
T  1847162 ttggtgtcc 1847154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 86 - 386
Target Start/End: Complemental strand, 41945898 - 41945600
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||  | ||| |||||| |||||||||  ||| ||||||    
T  41945898 tttcttccccaaatatataaaattggaaccctaattttacgatgtgtaatctacactccaaaatctctaaattttcttccaataattaagggtcacgttc 41945799  T
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatct 285  Q
    |||||||| |||||||  | |||| ||||||        |||||||| ||||  |||||||  ||||| || ||||||||||| |||| || ||||||||    
T  41945798 ttccccaaatcaaaaaattgcaaatcctaat-ttttttaattgaatctgaaaaccaaaatctgcaaaa-ttattcaagcaaaactgttgaaattgaatct 41945701  T
Q  286 gaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgtt 385  Q
     |||||| | |||||||   || ||||||||  |  ||| |||||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||||    
T  41945700 aaaatgaaggggggtggtcatatgggcaaaaagagctatcaaagtcaagcttcatcttcatcctccatgtttaatggtgatgtgagagtgcttgaatgtt 41945601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 84 - 380
Target Start/End: Original strand, 32842721 - 32843017
Alignment:
Q  84 tctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgt 183  Q
    |||||||||||||||| ||||||||||||||||||||||| |||| | ||||||||| |||||||||||||||||||||| || |||||| ||  |||||    
T  32842721 tctttcttcctcaaatctataaaattggaaccctaatttttcaatctctaatctacaatccaaaattcccaaaatttcttccattaattaatgacaacgt 32842820  T
Q  184 tcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaat 283  Q
    ||||||  | ||| |||| ||||||||||||||        |||||||| ||||| ||||||| ||||||    ||||||||||||||||||  ||||||    
T  32842821 tcttccttacttctaaaaacttcaaaccctaatttgttttgattgaatctgaaatccaaaatccccaaaaaaaattcaagcaaaattgttcagattgaat 32842920  T
Q  284 ctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttga 380  Q
      ||||||||| | |||||| ||| |||||| |  | || | |||||| ||||| ||||| || ||  ||||||||||||||||| ||| |||||||    
T  32842921 gcgaaatgatgggtggtgggcgtatgggcaacacaagttctcaaagtcgagcttcatcttcaaactttatgtttaatggtgatgtcagaatgcttga 32843017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 90 - 316
Target Start/End: Original strand, 49494787 - 49495011
Alignment:
Q  90 ttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttcttcc 189  Q
    |||| ||||| ||||||||||||||||||||||||||||   ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  49494787 ttccccaaatgtataaaattggaaccctaattttacaatcattaatccacactccaaaattcccaaaaattcttccaataattagtggtaacgttcttcc 49494886  T
Q  190 ccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaat-tcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaa 288  Q
    |||||||||| | | ||||||||||||        ||||||||||||||   |||||| | |||||| |||||| ||||| ||||  | |||||||||||    
T  49494887 ccaattcaaataacctcaaaccctaat--tttttgattgaatccgaaataaaaaaatcccgaaaattccttcaaacaaaactgttataattgaatctgaa 49494984  T
Q  289 atgatgaggggtgggtgtaagggcaaaa 316  Q
    |||||| |||||||||||| ||||||||    
T  49494985 atgatg-ggggtgggtgtatgggcaaaa 49495011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 82 - 383
Target Start/End: Complemental strand, 48635173 - 48634872
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| ||| | ||||| |||||||||||||||  ||||| |  ||| ||||||| |||||  | ||||| || | |||| || | ||||       
T  48635173 gctctttcttccccaattgtataacattggaaccctaattacacaatctacaatttacactctaaaatcactaaaatatcctccaattataaatggtcca 48635074  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 281  Q
    |||||||||||||||||||| ||||||||||||||        |||||||  |||| ||||||||  ||||||||||| |||||||| | || || ||||    
T  48635073 gttcttccccaattcaaaaaacttcaaaccctaattttttcgtattgaatttgaaagtcaaaatcctcaaaatttcttaaagcaaaactattgaaattga 48634974  T
Q  282 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaa 381  Q
    ||||||||||||| ||||||||  || ||  |||| || ||||||||||| ||||| |||||  ||||||| ||||||||||| ||||||||||||||||    
T  48634973 atctgaaatgatggggggtgggaatatggaaaaaaacagttatgaaagtcgagcttcatcttcgagctccaagtttaatggtgttgtgagagtgcttgaa 48634874  T
Q  382 tg 383  Q
    ||    
T  48634873 tg 48634872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 82 - 371
Target Start/End: Original strand, 24382004 - 24382293
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| ||| | |||||| ||| ||||||||||  ||||| |  |||||||||||||||||  |||||||||| |||| |||| |||| |       
T  24382004 gctctttcttccccaattgtataaagttgtaaccctaattacacaatcttcaatctacactccaaaatcaccaaaatttccttcagtaataagtgatcca 24382103  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 281  Q
    |||||||||||||| ||||| ||||||||||||||        |||||||| |||| ||||||||  ||| |||| || |||||||| | || || ||||    
T  24382104 gttcttccccaattaaaaaatcttcaaaccctaattttttcgcattgaatctgaaagtcaaaatcctcaagattttttgaagcaaaactattgaaattga 24382203  T
Q  282 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgag 371  Q
    ||||||||||||| ||||||||  || ||  |||| |  ||||||||||  | ||| ||||| |||||||| || |||||||||||||||    
T  24382204 atctgaaatgatggggggtgggaatatggaaaaaaactgttatgaaagtttaacttcatcttgaagctccaagtataatggtgatgtgag 24382293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 86 - 201
Target Start/End: Original strand, 37865676 - 37865791
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||| ||||||  ||||||||  ||| ||||||    
T  37865676 tttcttccccaaatatataaaattggaaccctaattttacaatgtgtaatctacactccaaaatctccaaattttcttctaataattaagggtcacgttc 37865775  T
Q  186 ttccccaattcaaaaa 201  Q
    |||||||| |||||||    
T  37865776 ttccccaaatcaaaaa 37865791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 101 - 363
Target Start/End: Original strand, 31885827 - 31886088
Alignment:
Q  101 tataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttcttccccaattcaaaa 200  Q
    |||||||||||||| ||||||  ||||| || ||||||||||| |||||  |||||||||| | ||||||| ||||||   |||||||||||||| ||||    
T  31885827 tataaaattggaactctaattacacaatctgcaatctacactctaaaatcaccaaaatttcctccaataataagtggttcagttcttccccaattgaaaa 31885926  T
Q  201 agcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggt 300  Q
    | ||||||||||||||        |||||||  ||||  |||||||  ||||||||||| |||||| | | || || |||||||| |||||| | |||||    
T  31885927 aacttcaaaccctaattttttcgtattgaatttgaaagccaaaatcctcaaaatttcttgaagcaagactattgaaattgaatctaaaatgacg-ggggt 31886025  T
Q  301 gggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggt 363  Q
    |||  || ||| |||| || ||||||||||| ||||| ||||| ||| |||| ||||||||||    
T  31886026 gggaatatgggaaaaaacagttatgaaagtcgagcttcatcttcaagatccaagtttaatggt 31886088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 2975749 - 2975883
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| ||||||||||||||||||||  |||||  ||||| |  | |||||||||||||||  |||||||||||| ||||||| || |||       
T  2975749 gctctttcttccccaaatatataaaattggaactttaattacacaatcttcattctacactccaaaatcaccaaaatttcttccaataataagcggtcca 2975848  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||||||||| ||||||||||||||    
T  2975849 gttcttccccaattcaaaaaacttcaaaccctaat 2975883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 86 - 195
Target Start/End: Complemental strand, 33051253 - 33051144
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| ||||| |||||||| |||||| ||||| |||||||| ||||| ||||||||||||| ||||||  |||| ||||||||||||||||| |||    
T  33051253 tttcttccccaaatgtataaaataggaaccataattatacaatatttaatccacactccaaaatttccaaaaaatcttccaataattagtggtaacattc 33051154  T
Q  186 ttccccaatt 195  Q
    ||||||||||    
T  33051153 ttccccaatt 33051144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 184 - 392
Target Start/End: Original strand, 33112233 - 33112441
Alignment:
Q  184 tcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaat 283  Q
    |||||||||||||||||| |||||||||||||         |||||||  |||  ||||||||   |||||||||| |||||||| | || || ||| ||    
T  33112233 tcttccccaattcaaaaaacttcaaaccctaac-tttttgcattgaatttgaatgtcaaaatccttaaaatttcttgaagcaaaactattgaaattggat 33112331  T
Q  284 ctgaaatgatgagggg-tgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaat 382  Q
    ||||||||||| |||| ||||  || ||| |||| || ||||||||||| ||||| ||||| || ||||| |||||||||||||||||||||||||||||    
T  33112332 ctgaaatgatgggggggtgggaatatgggaaaaaacagttatgaaagtcgagcttcatcttcaaactccaagtttaatggtgatgtgagagtgcttgaat 33112431  T
Q  383 gttgatgtcc 392  Q
    |||| |||||    
T  33112432 gttggtgtcc 33112441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 258 - 386
Target Start/End: Original strand, 37886239 - 37886367
Alignment:
Q  258 ttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgttt 357  Q
    ||||||||||| |||| || |||||||| ||||||||||||||||   || ||||||||  |  ||| |||||||||||| ||||| |  ||||||||||    
T  37886239 ttcaagcaaaactgttgaaattgaatctaaaatgatgaggggtggtcatatgggcaaaaagagctatcaaagtcaagcttcatcttcatcctccatgttt 37886338  T
Q  358 aatggtgatgtgagagtgcttgaatgttg 386  Q
    |||||||||||||||||||||||||||||    
T  37886339 aatggtgatgtgagagtgcttgaatgttg 37886367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 182 - 386
Target Start/End: Complemental strand, 23775353 - 23775149
Alignment:
Q  182 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 281  Q
    ||||||||||| |||||||| ||||||||||||||        ||| |||  ||||  |||||||  ||||||||||| |||||||| | || || ||||    
T  23775353 gttcttccccacttcaaaaaacttcaaaccctaattttttcgtatttaatttgaaagccaaaatcctcaaaatttcttgaagcaaaactattgaaattga 23775254  T
Q  282 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaa 381  Q
    ||||||||||||| ||| ||||  || ||| |||| || ||||||||||| ||||| |||||  ||||| | ||| ||||||| ||||||||||||||||    
T  23775253 atctgaaatgatgggggatgggaatatgggaaaaaacagttatgaaagtcgagcttcatcttcgagctctaagttcaatggtgttgtgagagtgcttgaa 23775154  T
Q  382 tgttg 386  Q
    |||||    
T  23775153 tgttg 23775149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 82 - 392
Target Start/End: Original strand, 35861831 - 35862141
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatt-tctttcaataattagtggtaa 180  Q
    |||||||||||| ||||| |||||||||| |||||||||| || ||| ||||||||| | |||||||| ||||||| | |||| |  |||||  ||  ||    
T  35861831 gctctttcttccccaaatctataaaattgaaaccctaattataaaatttgtaatctatagtccaaaatccccaaaaatatcttcctttaattgatgacaa 35861930  T
Q  181 cgttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaa-atcaccaaaatttcttcaagcaaaattgttcaattt 279  Q
    | |||||||||| || ||||| |||| || |||| |        ||||||||||||||||||| ||| |||||||| |||||||      ||||||  ||    
T  35861931 cattcttccccatttaaaaaa-cttctaaacctatt-tttttttattgaatccgaaattcaaagatccccaaaattccttcaagttttggtgttcaggtt 35862028  T
Q  280 gaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttg 379  Q
    ||||||||||||||| | |||||  ||| |||||||| ||||||| |||||  |  || ||||| |||||| |||||||||||||||||||||||| |||    
T  35862029 gaatctgaaatgatgggtggtggacgtatgggcaaaaacaattatcaaagttgattttcatcttcaagctctatgtttaatggtgatgtgagagtgtttg 35862128  T
Q  380 aatgttgatgtcc 392  Q
    | ||||| |||||    
T  35862129 agtgttggtgtcc 35862141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 240 - 392
Target Start/End: Original strand, 45897487 - 45897640
Alignment:
Q  240 caaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaag-caattatgaaagtcaagcttt 338  Q
    |||||||  ||||||||||| |||||||| | || || |||||| |||||||||| ||||||||  || ||| ||||  |  |||| ||||||||||||     
T  45897487 caaaatcctcaaaatttcttgaagcaaaactattgaaattgaatatgaaatgatgtggggtgggaatatgggaaaaaaacggttataaaagtcaagcttc 45897586  T
Q  339 atctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 392  Q
    ||||| |||||||| ||||||||||| ||||||||||||||||||||| |||||    
T  45897587 atcttcaagctccaagtttaatggtgttgtgagagtgcttgaatgttggtgtcc 45897640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 254 - 392
Target Start/End: Original strand, 2975887 - 2976024
Alignment:
Q  254 tttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccat 353  Q
    |||||| |||||||| | || || |||||||||||||||| |||||||||  || ||| |||| || |||| |||||| ||||| ||||| ||| ||||     
T  2975887 tttcttgaagcaaaactattgaaattgaatctgaaatgataaggggtgggaatatgggaaaaa-cagttatcaaagtcgagcttcatcttcaagttccaa 2975985  T
Q  354 gtttaatggtgatgtgagagtgcttgaatgttgatgtcc 392  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  2975986 gtttaatggtgatgtgagattgcttgaatgttgttgtcc 2976024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 82 - 367
Target Start/End: Original strand, 18429030 - 18429314
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    ||||| |||||| ||| | |||||||||| ||||||||||  ||||| || |||||| | || |||||  || ||||||| |  |||||| ||||||       
T  18429030 gctctgtcttccccaattgtataaaattgaaaccctaattacacaatctgcaatctatattctaaaatcacctaaatttcctctaataataagtggtcca 18429129  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 281  Q
    |||||||||||||||||||| ||| |||||| |||        |||||||| |||| ||||||||  ||||||||||| |||||||| | || || ||||    
T  18429130 gttcttccccaattcaaaaaacttgaaacccgaatttttttgtattgaatctgaaagtcaaaatctacaaaatttcttgaagcaaaactattgaaattga 18429229  T
Q  282 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatg 367  Q
    || ||||||||   |||||| |  |||||| ||||    ||||||||||| ||||| ||||| |||||||| |||||| |||||||    
T  18429230 atttgaaatga-acggggtgagaataagggaaaaaattgttatgaaagtcgagcttcatcttcaagctccaagtttaacggtgatg 18429314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 82 - 367
Target Start/End: Original strand, 45255773 - 45256058
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    ||||| |||||| ||| | ||||||||| |||||||||||  ||||| || |||||||| || |||||  || ||||||| | ||||||| ||||||       
T  45255773 gctctgtcttccccaattgtataaaatttgaaccctaattacacaatctgcaatctacattctaaaatcacctaaatttcctccaataataagtggtcca 45255872  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 281  Q
    |||||||||||||||||||| ||| ||||||||||        |||||||| ||||  |||||||  ||||||||||| || ||||| | || || ||||    
T  45255873 gttcttccccaattcaaaaaacttgaaaccctaat-ttttcgtattgaatctgaaagccaaaatccacaaaatttcttgaaacaaaactattgaaattga 45255971  T
Q  282 atctgaaatgatgaggggtgggtgtaagggcaaaagca--attatgaaagtcaagctttatctttaagctccatgtttaatggtgatg 367  Q
    ||||||||||| | |||||| |  || ||| ||||  |   ||||||||||| ||||| || || |||||||| ||||||||||||||    
T  45255972 atctgaaatgaag-ggggtgagaatatgggaaaaaaaattgttatgaaagtcgagcttcattttcaagctccaagtttaatggtgatg 45256058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 367
Target Start/End: Original strand, 33851291 - 33851555
Alignment:
Q  101 tataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttcttccccaattcaaaa 200  Q
    ||||||||||||||| |||||  ||||| || |||||||| || |||||  || ||||||| | ||||||| ||||||   |||||||||||||||||||    
T  33851291 tataaaattggaacc-taattacacaatctgcaatctacattctaaaatcacctaaatttcctccaataataagtggtccagttcttccccaattcaaaa 33851389  T
Q  201 agcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggt 300  Q
    |  || ||||||||||        |||||||| ||||  |||||||  ||||||||||| ||| |||| | || || ||||||||||||||| | |||||    
T  33851390 aatttgaaaccctaatttttttgtattgaatctgaaagccaaaatccacaaaatttcttgaagaaaaactattgaaattgaatctgaaatgaaggggggt 33851489  T
Q  301 gggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatg 367  Q
     ||  |  ||| ||||    ||||||||||| ||||| ||||| |||||||| ||||||||||||||    
T  33851490 -ggaatctgggaaaaaattgttatgaaagtcgagcttcatcttcaagctccaagtttaatggtgatg 33851555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 2378709 - 2378576
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||| |||||||||||| ||||||||||||| ||| ||| ||| | ||| | | |||||| ||| ||||||||| ||  ||||  ||  || |    
T  2378709 ctctttcttccccaaatatataaatttggaaccctaatattataatttgttacctagagttcaaaatcccccaaatttcttacatgaattgatgtcaatg 2378610  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||| |||||||||| ||| ||||||||||    
T  2378609 ttcttccctaattcaaaaaacttaaaaccctaat 2378576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 42282268 - 42282135
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    |||||||||||  ||||||||||| ||||||||||||| ||| ||| ||| |  || | | |||||| ||||||||||||| ||  ||||  ||  || |    
T  42282268 ctctttcttccctaaatatataaatttggaaccctaatgttataatttgtcacatagaattcaaaatccccaaaatttcttccatgaattgatgccaaag 42282169  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    ||||||||||||||||||| ||| ||||||||||    
T  42282168 ttcttccccaattcaaaaaacttaaaaccctaat 42282135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 308
Target Start/End: Complemental strand, 10380719 - 10380511
Alignment:
Q  101 tataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttcttccccaattcaaaa 200  Q
    ||||| |||| ||||||||||  ||||| |||||| ||||||  |||||  ||||||| || | |||| || | ||||   |||||||||||||||||||    
T  10380719 tataacattgaaaccctaattacacaatctgtaatttacactttaaaatctccaaaatatcctccaattataaatggtccagttcttccccaattcaaaa 10380620  T
Q  201 agcttcaaaccctaa-tannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgagggg 299  Q
    | ||||||||||||| |        |||||||  ||||  |||||||  ||||||||||| |||||||| | || || |||||||| |||| ||| ||||    
T  10380619 atcttcaaaccctaatttttttcatattgaatttgaaagccaaaatcctcaaaatttcttgaagcaaaactattgaaattgaatctaaaatcatgggggg 10380520  T
Q  300 tgggtgtaa 308  Q
    |||||||||    
T  10380519 tgggtgtaa 10380511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 216
Target Start/End: Complemental strand, 610984 - 610850
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| |||||||||||  |||||||| |||| ||| ||| ||| | | | | | || ||| ||||||||||||||||  ||||  ||  ||     
T  610984 gctctttcttccccaaatatataattttggaaccttaatgttataatttgtcaccaagagttcacaatccccaaaatttctttcatgaattgatgccaaa 610885  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||||||||| ||| ||||||||||    
T  610884 gttcttccccaattcaaaaaacttaaaaccctaat 610850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 86 - 216
Target Start/End: Complemental strand, 51686143 - 51686013
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| |||||||||||| ||  ||||||||| ||| ||| ||| | ||| | | |||||| ||||||||||||| ||  ||||  ||  || ||||    
T  51686143 tttcttccccaaatatataaatttctaaccctaatgttataatttgtcacctagagttcaaaatccccaaaatttcttccatgaattgatgccaaagttc 51686044  T
Q  186 ttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||||| ||| ||||||||||    
T  51686043 ttccccaattcaaaaaacttaaaaccctaat 51686013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 17516741 - 17516608
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||| |||||||||||| ||||||| ||||| ||| ||| ||||| ||| | | |||||| | | ||||||||| ||  ||||  ||  || |    
T  17516741 ctctttcttccccaaatatataaatttggaactctaatgttataatttgtaacctagagttcaaaatcctccaaatttcttccatgaattgatgtcaatg 17516642  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||| |||||||||| ||| ||||||||||    
T  17516641 ttcttccctaattcaaaaaacttaaaaccctaat 17516608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 21350390 - 21350257
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||| |||||||||||| ||||||||||||| ||| ||| ||| | ||| | |  ||||| ||| ||||||||| ||  ||||  ||  || |    
T  21350390 ctctttcttccccaaatatataaatttggaaccctaatgttataatttgtcacctagagtttaaaatcccccaaatttcttccatgaattgatgtcaatg 21350291  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    | ||||||||||||||||| ||| ||||||||||    
T  21350290 tacttccccaattcaaaaaacttaaaaccctaat 21350257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 30598658 - 30598791
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    |||||||| || |||||||||||| ||||||||||||| ||| ||| ||| | ||| | | ||||||  || ||||||||| ||  ||||  ||  || |    
T  30598658 ctctttctaccccaaatatataaatttggaaccctaatgttataatttgtcacctagagttcaaaatctcccaaatttcttccatgaattgatgtcaatg 30598757  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    ||||||||||||||||||| ||| ||||||||||    
T  30598758 ttcttccccaattcaaaaaacttaaaaccctaat 30598791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 82 - 214
Target Start/End: Original strand, 44268301 - 44268432
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| |||||||||||| ||||||||||||| ||| ||| ||| | | | | | |||||| ||| ||||||||| ||  ||||| ||  ||     
T  44268301 gctctttcttccccaaatatataaatttggaaccctaatgttataatttgtcacccagagttcaaaatcccccaaatttcttccatgaattaatgtcaat 44268400  T
Q  182 gttcttccccaattcaaaaagcttcaaacccta 214  Q
    |||||| ||||||||||||| ||| ||||||||    
T  44268401 gttctttcccaattcaaaaaactt-aaacccta 44268432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 339 - 385
Target Start/End: Complemental strand, 13466655 - 13466609
Alignment:
Q  339 atctttaagctccatgtttaatggtgatgtgagagtgcttgaatgtt 385  Q
    ||||| |||||| ||||||||||||||||||||||| ||||||||||    
T  13466655 atcttgaagctctatgtttaatggtgatgtgagagtacttgaatgtt 13466609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 23887489 - 23887622
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| ||| | |||||||||| || |||||||  ||||| || ||||||||||| | |||    |||||||| | ||||||| ||||||       
T  23887489 gctctttcttcc-caattgtataaaattgaaatcctaattacacaatctgcaatctacactctataatcatgaaaatttcctccaataataagtggttga 23887587  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    ||||| ||||||||||||||  |||||||||||||    
T  23887588 gttctgccccaattcaaaaaatttcaaaccctaat 23887622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 27897512 - 27897646
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| |||||||||||| ||||||||||||| ||| ||| ||| | ||| | | |||||| ||  ||||||||| ||  ||||  ||  ||     
T  27897512 gctctttcttccccaaatatataaatttggaaccctaatgttataatttgttacctagagttcaaaatccctcaaatttcttacatgaattgatgtcaat 27897611  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||| ||||| ||| ||||| ||||    
T  27897612 gttcttccccaattaaaaaaacttaaaaccataat 27897646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 23875963 - 23876095
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    |||||||||||  |||| || |||||||||||||| ||||||  || ||| || || | | |||||||| ||||||||||| || |||||  ||  ||      
T  23875963 ctctttcttcccaaaatctacaaaattggaacccttattttatcatttgtcat-tagagttcaaaattctcaaaatttcttccattaattgatgacaatc 23876061  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    ||||||||||||||||||| ||||||| ||||||    
T  23876062 ttcttccccaattcaaaaaacttcaaaacctaat 23876095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 208
Target Start/End: Original strand, 45897342 - 45897467
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||| ||| | ||||||||| |||||||||||  |||||||| ||||||||||| | |||    |||||||| | ||||||| |||| |   |    
T  45897342 ctctttcttccccaattgtataaaattagaaccctaattacacaatatgcaatctacactctataatcatgaaaatttcctccaataataagtgcttcag 45897441  T
Q  183 ttcttccccaattcaaaaagcttcaa 208  Q
    |||| | |||||||||||| ||||||    
T  45897442 ttctgctccaattcaaaaaacttcaa 45897467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 30501299 - 30501367
Alignment:
Q  9 agcagagactaatgtggtcgacagtgaccaaaatttccaaggatcaaattaattgatttgtagaaaatg 77  Q
    |||| |||||||| |||  || |||||||||||||||||||||  ||||| ||||||||| ||||||||    
T  30501299 agcaaagactaatttggctgatagtgaccaaaatttccaaggacgaaattgattgatttgcagaaaatg 30501367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 7589470 - 7589540
Alignment:
Q  9 agcagagactaatgtggtcgacagtgaccaaaatttccaaggatcaaattaattgatttgtagaaaatgct 79  Q
    ||||| ||||||| ||||||| | ||| |||||||||||| ||  ||||| ||||||||| ||||||||||    
T  7589470 agcagggactaatttggtcgataatgatcaaaatttccaatgacaaaattgattgatttgcagaaaatgct 7589540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 23291889 - 23292023
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||   ||||||||||| ||||||||||||| ||| |||  || ||||| | | ||||||  || ||||||||| ||  |||||  |  ||     
T  23291889 gctctttcttctataaatatataaatttggaaccctaatgttataattcgtcatctagagttcaaaatctcccaaatttcttccatgaattaacgtcaat 23291988  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||||||||  ||| ||||||||||    
T  23291989 gttcttccccaattcaaaagacttaaaaccctaat 23292023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 392
Target Start/End: Original strand, 22218719 - 22218772
Alignment:
Q  339 atctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 392  Q
    ||||| ||| || |||| |||||||||||||||||| ||||||||||| |||||    
T  22218719 atcttcaagttctatgtctaatggtgatgtgagagtacttgaatgttggtgtcc 22218772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 40963270 - 40963210
Alignment:
Q  17 ctaatgtggtcgacagtgaccaaaatttccaaggatcaaattaattgatttgtagaaaatg 77  Q
    ||||| ||| ||| ||| |||||||||||||| ||| ||||| ||||||||| ||||||||    
T  40963270 ctaatttggccgatagtaaccaaaatttccaaagatgaaattgattgatttgcagaaaatg 40963210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 5e-66; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 86 - 386
Target Start/End: Original strand, 11021825 - 11022125
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||| |||||| |||||||||  ||| ||||||    
T  11021825 tttcttccccaaatatataaaattggaaccctaattttacaatgtgtaatctacactccaaaatctccaaattttcttccaataattaagggtcacgttc 11021924  T
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatct 285  Q
    |||||||| |||||||  | |||||||||||        |||||||| |||| ||||||||  |||||||  ||||||||||| |||| || ||||||||    
T  11021925 ttccccaaatcaaaaaattgcaaaccctaattttttttaattgaatctgaaaatcaaaatctgcaaaattcattcaagcaaaactgttgaaattgaatct 11022024  T
Q  286 gaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgtt 385  Q
     ||||||||||||||||   || || |||||  |  ||| |||||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||||    
T  11022025 aaaatgatgaggggtggtcatatggacaaaaagagctatcaaagtcaagcttcatcttcatcctccatgtttaatggtgatgtgagagtgcttgaatgtt 11022124  T
Q  386 g 386  Q
    |    
T  11022125 g 11022125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 86 - 386
Target Start/End: Complemental strand, 28247974 - 28247674
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||| |||||| |||||||||  ||| ||||||    
T  28247974 tttcttccccaaatatataaaattggaaccctaattttacaatgtgtaatctacactccaaaatctccaaattttcttccaataattaagggtcacgttc 28247875  T
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatct 285  Q
    |||||||| |||||||  | |||||||||||        |||||||| ||||  |||||||  |||||||  ||||||||||| |||| || ||||||||    
T  28247874 ttccccaaatcaaaaaattgcaaaccctaattttttttaattgaatctgaaaaccaaaatctgcaaaattcattcaagcaaaactgttgaaattgaatct 28247775  T
Q  286 gaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgtt 385  Q
     |||||||| | |||||   || ||||||||  |  ||| |||||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||||    
T  28247774 aaaatgatgggaggtggtcatatgggcaaaaagagctatcaaagtcaagcttcatcttcatcctccatgtttaatggtgatgtgagagtgcttgaatgtt 28247675  T
Q  386 g 386  Q
    |    
T  28247674 g 28247674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 86 - 216
Target Start/End: Complemental strand, 363485 - 363354
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||    
T  363485 tttcttccccaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaatcctcaaaatttcttccaataattagtggtaacgttc 363386  T
Q  186 ttccccaattca-aaaagcttcaaaccctaat 216  Q
    ||| |||||||| |||| ||||||||||||||    
T  363385 ttctccaattcaaaaaaacttcaaaccctaat 363354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 86 - 375
Target Start/End: Original strand, 11313127 - 11313402
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| ||||||||||||||| |||||||||||||||||| | |||| ||||||||||||| |||| ||||             |||||||||||||    
T  11313127 tttcttccccaaatatataaaattagaaccctaattttacaatctttaatgtacactccaaaatccccacaatt-------------agtggtaacgttc 11313213  T
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatct 285  Q
    |||||||||| ||||| || |||||||| ||        |||||||||||||   | |||  ||||||||||||||||||||| ||||||| ||||||      
T  11313214 ttccccaattaaaaaaactccaaaccctcatttttttttattgaatccgaaaactagaattcccaaaatttcttcaagcaaaactgttcaaattgaatag 11313313  T
Q  286 gaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtg 375  Q
     || ||||| ||||||||  || ||||||||  | | || |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11313314 aaactgatg-ggggtgggcatatgggcaaaaagagtcatcaaagtcaagctttatcttcaagctccatgtttaatggtgatgtgagagtg 11313402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 86 - 386
Target Start/End: Complemental strand, 38149836 - 38149535
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||| | |||||||||||||||||||||||||||||||||| |||||||||||||| |||||  ||||| |||||| |||||||||  ||| |||||     
T  38149836 tttctttcccaaatatataaaattggaaccctaattttacaatgtgtaatctacactctaaaatctccaaattttcttccaataattaagggtcacgtta 38149737  T
Q  186 ttccccaattcaaaaagcttcaaaccct-aatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatc 284  Q
    |||||||| |||||||  | |||| ||| | |        |||||||| ||||  |||||||  |||||||  ||||||||||| |||| || |||||||    
T  38149736 ttccccaaatcaaaaaattgcaaatcctgatttttttttaattgaatctgaaaaccaaaatctgcaaaattcattcaagcaaaactgttgaaattgaatc 38149637  T
Q  285 tgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgt 384  Q
    | |||||||| | |||||   || ||||||||  |  ||| |||||||||||| ||||| |  ||||||||||||||||||||||||| ||||| |||||    
T  38149636 taaaatgatgggaggtggtcatatgggcaaaaagagctatcaaagtcaagcttcatcttcatcctccatgtttaatggtgatgtgagaatgcttaaatgt 38149537  T
Q  385 tg 386  Q
    ||    
T  38149536 tg 38149535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 86 - 216
Target Start/End: Complemental strand, 7745062 - 7744932
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||| | ||||| |||||||||| ||||||||||||||||| | ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||    
T  7745062 tttctttcccaaatgtataaaattgaaaccctaattttacaatctttaatccacactccaaaattcccaaaaattcttccaataattagtggtaacgttc 7744963  T
Q  186 ttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||| ||| | | ||||||||||||    
T  7744962 ttccccaattgaaataacctcaaaccctaat 7744932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 84 - 391
Target Start/End: Original strand, 10715400 - 10715690
Alignment:
Q  84 tctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgt 183  Q
    ||||| |||| |||||||||||||||||||||||||||||||||| | |||||||| ||  ||||||||||||||| ||| | ||||||||  |||||||    
T  10715400 tcttttttccccaaatatataaaattggaaccctaattttacaatctttaatctaccctaaaaaattcccaaaattccttccgataattagcagtaacgt 10715499  T
Q  184 tcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaat 283  Q
    | || ||||||||||||| ||||||||||||||        ||||||||| |||   | |||| ||||||||||||||||||||| ||||||| ||||||    
T  10715500 tgtt-cccaattcaaaaaacttcaaaccctaat--ttttttattgaatccaaaaactagaatccccaaaatttcttcaagcaaaactgttcaaattgaat 10715596  T
Q  284 ctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatg 383  Q
      |||||||||  |||||||  || || |||||  | |||| ||||||             |||||||||||||||||||| ||||||||||||||||||    
T  10715597 tcgaaatgatg-cgggtgggcatatggacaaaaagagttatcaaagtc-------------aagctccatgtttaatggtgctgtgagagtgcttgaatg 10715682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 17948734 - 17948601
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||| | ||||| |||||||||| ||||||||||||||||| | ||||| |||||||||||||||||||| ||||| |||||||| |||||||||    
T  17948734 ctctttctttcccaaatgtataaaattgaaaccctaattttacaatctttaatccacactccaaaattcccaaaaattcttccaataattggtggtaacg 17948635  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    ||||||||||||| ||| | | ||||||||||||    
T  17948634 ttcttccccaattgaaataacctcaaaccctaat 17948601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 82 - 386
Target Start/End: Complemental strand, 37418569 - 37418263
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| ||| | ||||| |||||||||||||||  ||||| || ||| ||||||| |||||  ||||||| || | |||| || | ||||       
T  37418569 gctctttcttccccaattgtataacattggaaccctaattacacaatctgcaatttacactctaaaatcaccaaaatatcctccaattataaatggtcca 37418470  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaa-tannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttg 280  Q
    ||||||| |||||||||||| ||||||||||||| |        |||||||  ||||  |||||||  |||| |||||| |||||||| | || || |||    
T  37418469 gttcttcgccaattcaaaaaacttcaaaccctaatttttttcgtattgaatttgaaagccaaaatcctcaaagtttcttgaagcaaaactattgaaattg 37418370  T
Q  281 aatctgaaatgatgaggggtgggtgtaagg-gcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttg 379  Q
    |||||||||||||| ||||||||  || ||   |||| || ||||||||||| || || |||||  |||| || ||||||||||| ||||||||||||||    
T  37418369 aatctgaaatgatggggggtgggaatatggaaaaaaaacagttatgaaagtcgagtttcatcttcgagcttcaagtttaatggtgttgtgagagtgcttg 37418270  T
Q  380 aatgttg 386  Q
    |||||||    
T  37418269 aatgttg 37418263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 86 - 392
Target Start/End: Original strand, 35575 - 35881
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| ||| | ||||||||| ||||| |||||  ||||| || ||| ||||||| | |||    |||||||| | ||||||| ||||||   ||||    
T  35575 tttcttccccaattgtataaaattcgaaccttaattacacaatctgcaatatacactctataatcatgaaaatttcctccaataataagtggttcagttc 35674  T
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnn-attgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatc 284  Q
    | |||||||||||||| ||||||||||||||         | |||||| ||||  || ||||  ||||||||||| |||||||| | || || |||||||    
T  35675 tgccccaattcaaaaaacttcaaaccctaatttttttcgtagtgaatctgaaagccagaatcctcaaaatttcttgaagcaaaactattgaaattgaatc 35774  T
Q  285 tgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgt 384  Q
    |||||||||| || |||||  || ||  |||| |  |||||||||| ||| || ||||| |||||||| ||||||||||| |||||||||||||||||||    
T  35775 tgaaatgatgtggagtgggaatatggaaaaaa-cggttatgaaagttaagtttcatcttcaagctccaagtttaatggtgttgtgagagtgcttgaatgt 35873  T
Q  385 tgatgtcc 392  Q
    || |||||    
T  35874 tggtgtcc 35881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 86 - 209
Target Start/End: Original strand, 2359394 - 2359516
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| ||||| |||||||||| ||||||||||||||||| ||| ||||| | ||||||| ||||||||||||| ||| |||||  ||  |||||||    
T  2359394 tttcttccccaaatctataaaattgaaaccctaattttacaatttgtcatctagagtccaaaa-tcccaaaatttctatcattaattgatgacaacgttc 2359492  T
Q  186 ttccccaattcaaaaagcttcaaa 209  Q
    ||||||||||| |||| |||||||    
T  2359493 ttccccaattctaaaaacttcaaa 2359516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 83 - 386
Target Start/End: Complemental strand, 42880610 - 42880309
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||| ||| | ||||| |||| ||||||||||  ||||| || ||| ||||||| |||||  ||||||| || | |||| || | ||||   |    
T  42880610 ctctttcttccccaattgtataacattgaaaccctaattacacaatctgcaatttacactctaaaatcaccaaaatatcctccaattataaatggtccag 42880511  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaa 282  Q
    ||||||||||||| ||||| ||||||||||||||        ||| |||  ||||  |||||||  ||||||||||| |||||||| | || || |||||    
T  42880510 ttcttccccaatttaaaaaacttcaaaccctaattttttcgtattaaatttgaaagccaaaatcctcaaaatttcttgaagcaaaactattgaaattgaa 42880411  T
Q  283 tctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaat 382  Q
    || ||||| ||| ||| ||||  || ||| |||| || ||||||||||| ||||| |||||| ||||| | |||||||||||   || ||||||||||||    
T  42880410 tcagaaatcatgggggttgggaatatgggaaaaaacagttatgaaagtcgagcttcatctttgagctctaagtttaatggtg--ttgcgagtgcttgaat 42880313  T
Q  383 gttg 386  Q
    ||||    
T  42880312 gttg 42880309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 34400628 - 34400762
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| |||||||||||| ||||||||||||| ||| ||| ||| | | | | | |||||| ||| ||||||||| ||  ||||  ||  ||     
T  34400628 gctctttcttccccaaatatataaatttggaaccctaatgttataatttgtcacccagagttcaaaatcccccaaatttcttccatgaattgatgtcaat 34400727  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||||||||| ||| ||||||||||    
T  34400728 gttcttccccaattcaaaaaacttaaaaccctaat 34400762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 42517877 - 42518011
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| |||||||||||| ||||||||||||| ||| ||| ||| | ||| | | |||||| ||| || |||||| ||  ||||  ||  ||     
T  42517877 gctctttcttccccaaatatataaatttggaaccctaatgttataatttgtcacctagagttcaaaatcccccaattttcttccatgaattgatgtcaat 42517976  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||||||||| ||| ||||||||||    
T  42517977 gttcttccccaattcaaaaaacttaaaaccctaat 42518011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 216
Target Start/End: Complemental strand, 15373683 - 15373554
Alignment:
Q  88 tcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggta-acgttct 186  Q
    |||||| ||| | |||||||||||||||||||||  ||||| | ||||||||| || || ||  || ||||||| | ||||||| ||||||  | |||||    
T  15373683 tcttccccaattgtataaaattggaaccctaattacacaatctataatctacattctaatatcacctaaatttcctccaataataagtggtccaagttct 15373584  T
Q  187 tccccaattcaaaaagcttcaaaccctaat 216  Q
    ||||||||||||||| ||| ||||||||||    
T  15373583 tccccaattcaaaaaacttaaaaccctaat 15373554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 343
Target Start/End: Original strand, 40150664 - 40150825
Alignment:
Q  183 ttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaag-caaaattgttcaatttga 281  Q
    ||||||||| |||| |||| |||||||||||| |        ||||||||| |||| |||||||  ||||||||||||||  ||||||||||||  ||||    
T  40150664 ttcttcccctattctaaaaacttcaaaccctattttgttttcattgaatccaaaatccaaaatcttcaaaatttcttcaaatcaaaattgttcagattga 40150763  T
Q  282 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctt 343  Q
    |||| |||||||| | |||||  ||| |||||||| ||||| | ||||||||| || |||||    
T  40150764 atctaaaatgatgggtggtggccgtatgggcaaaaacaattctcaaagtcaagtttcatctt 40150825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 82 - 294
Target Start/End: Complemental strand, 40152346 - 40152135
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||| | ||||| |||||||||| ||||| |||||| |||| | | ||||||  ||||||||  ||| |||||||| || ||||||     |||    
T  40152346 gctctttctttcccaaatctataaaattgaaacccaaatttttcaatctctcatctacggtccaaaatctccacaatttcttccattaattaac---aac 40152250  T
Q  182 g--ttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaattt 279  Q
       |||||||||||||| |||| ||| ||||||||||        |||||||||||||| |||||||   ||||||||||||| ||||||||||||  ||    
T  40152249 catttcttccccaattctaaaaacttaaaaccctaatttgatttgattgaatccgaaatccaaaatcctgaaaatttcttcaaccaaaattgttcagatt 40152150  T
Q  280 gaatctgaaatgatg 294  Q
    |||||  ||||||||    
T  40152149 gaatccaaaatgatg 40152135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 215
Target Start/End: Complemental strand, 17697903 - 17697776
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||| |||||||||||| ||||||||||||| ||| ||| ||| | ||| | | |||||| ||||||||||| ||| |||| |  |||    |    
T  17697903 ctctttcttccccaaatatataaatttggaaccctaatgttataatttgtcacctagagttcaaaatccccaaaatttc-ttccataaatgatgg----g 17697809  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaa 215  Q
    ||||||||||||||||||| ||| |||||||||    
T  17697808 ttcttccccaattcaaaaaacttaaaaccctaa 17697776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 19907036 - 19907170
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| |||||||||||| | ||||||||||| ||| ||| ||| | ||| | | |||||| ||| ||||||||| ||  ||||  ||  ||     
T  19907036 gctctttcttccccaaatatataaattcggaaccctaatgttataatttgttacctagagttcaaaatcccccaaatttcttacatgaattgatgtcaat 19907135  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    ||||||| |||||||||||| ||| ||||||||||    
T  19907136 gttcttcaccaattcaaaaaacttaaaaccctaat 19907170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 249 - 367
Target Start/End: Complemental strand, 42003108 - 42002990
Alignment:
Q  249 caaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagc 348  Q
    ||||||||||| |||||||| | || || |  |||||||||||||  ||||||||  || ||| |||| |  ||||||||||| ||||| ||||| ||||    
T  42003108 caaaatttcttgaagcaaaactattgaaataaaatctgaaatgatagggggtgggaatatgggaaaaaactgttatgaaagtcgagcttcatcttcaagc 42003009  T
Q  349 tccatgtttaatggtgatg 367  Q
    |||| ||||||||||||||    
T  42003008 tccaagtttaatggtgatg 42002990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 88 - 216
Target Start/End: Complemental strand, 41708225 - 41708097
Alignment:
Q  88 tcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttctt 187  Q
    |||||| ||| | |||||||||||||||||||||  ||||| | ||||||||| || || ||  || ||||||| | | ||||| ||||||   ||||||    
T  41708225 tcttccccaattgtataaaattggaaccctaattacacaatctataatctacattctaatatcacctaaatttcctcccataataagtggtccagttctt 41708126  T
Q  188 ccccaattcaaaaagcttcaaaccctaat 216  Q
    || ||||||||||| ||| ||||||||||    
T  41708125 cctcaattcaaaaaacttaaaaccctaat 41708097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 216
Target Start/End: Original strand, 26581316 - 26581430
Alignment:
Q  102 ataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttcttccccaattcaaaaa 201  Q
    |||| ||| ||| |||||||||| ||| ||| | ||| | | |||||||||||||||||||| || |||||  ||  |||| | ||||||||||||||||    
T  26581316 ataagattagaatcctaattttataatttgtcacctagagttcaaaattcccaaaatttcttccattaattgatgacaacgctgttccccaattcaaaaa 26581415  T
Q  202 gcttcaaaccctaat 216  Q
     ||||||| ||||||    
T  26581416 acttcaaaacctaat 26581430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 16377082 - 16377163
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctt 163  Q
    |||||||||||| |||||||||||| ||||||||||||| ||| ||| ||| | ||||| | |||||| | | |||||||||    
T  16377082 gctctttcttccccaaatatataaatttggaaccctaatgttataatttgttacctacagttcaaaatcctctaaatttctt 16377163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 363585 - 363509
Alignment:
Q  15 gactaatgtggtcgacagtgaccaaaatttccaaggatcaaattaattgatttgtagaaaatgctttgctctttcttcctcaa 97  Q
    ||||||| ||| ||| |||||||||||||| ||||||       |||||||||| |||||||| |||||||||||||||||||    
T  363585 gactaatttggccgatagtgaccaaaattttcaaggac------aattgatttgcagaaaatgttttgctctttcttcctcaa 363509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 4047758 - 4047703
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatcta 138  Q
    ||||||||||| ||||| |||||||||| ||||||||||||| ||| ||| |||||    
T  4047758 ctctttcttccccaaatctataaaattgaaaccctaattttataatttgtcatcta 4047703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 161854 - 161813
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaatttta 124  Q
    ||||||||||| |||||||| ||| |||||||||||||||||    
T  161854 ctctttcttccccaaatataaaaatttggaaccctaatttta 161813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 2359587 - 2359542
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaat 128  Q
    ||||||||||| ||||| ||| |||||||||||||||||| |||||    
T  2359587 ctctttcttccccaaatctattaaattggaaccctaatttgacaat 2359542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 14387765 - 14387837
Alignment:
Q  144 caaaattcccaaaatttctttcaataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||| ||||||||||||| ||||||||  ||  ||  ||||||||||||||||||| |||  |||||||||    
T  14387765 caaaatccccaaaatttcttccaataattgatgtcaattttcttccccaattcaaaaaacttagaaccctaat 14387837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 216
Target Start/End: Complemental strand, 31474847 - 31474719
Alignment:
Q  88 tcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttctt 187  Q
    |||||| |||||||||||| ||||||||||||| ||| ||| ||| | ||  | | |||||| | ||| ||||||| ||  ||||||||  || | ||||    
T  31474847 tcttccccaaatatataaatttggaaccctaatattataatttgtgaccttgagttcaaaatcctcaagatttcttccatgaattagtgacaaagatctt 31474748  T
Q  188 ccccaattcaaaaagcttcaaaccctaat 216  Q
     ||||||||||||| | | ||||||||||    
T  31474747 tcccaattcaaaaaacctaaaaccctaat 31474719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 5e-66; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 86 - 386
Target Start/End: Complemental strand, 5784666 - 5784366
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||| |||||| |||||||||  ||| ||||||    
T  5784666 tttcttccccaaatatataaaattggaaccctaattttacaatgtgtaatctacactccaaaatctccaaattttcttccaataattaagggtcacgttc 5784567  T
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatct 285  Q
    |||||||| |||||||  | |||||||||||        |||||||| |||| ||||||||  |||||||  ||||||||||| |||| || ||||||||    
T  5784566 ttccccaaatcaaaaaattgcaaaccctaattttttttaattgaatctgaaaatcaaaatctgcaaaattcattcaagcaaaactgttgaaattgaatct 5784467  T
Q  286 gaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgtt 385  Q
     ||||||||||||||||   || || |||||  |  ||| |||||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||||    
T  5784466 aaaatgatgaggggtggtcatatggacaaaaagagctatcaaagtcaagcttcatcttcatcctccatgtttaatggtgatgtgagagtgcttgaatgtt 5784367  T
Q  386 g 386  Q
    |    
T  5784366 g 5784366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 83 - 392
Target Start/End: Original strand, 42558248 - 42558546
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||| ||||| || ||||||||||||||||||||||||| ||| |||||          |  |||||| ||||| || |||||| ||   |||    
T  42558248 ctctttcttccccaaatctagaaaattggaaccctaattttacaatctgtcatcta----------tctccaaaaattcttccattaattaatgacgacg 42558337  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaa 282  Q
    ||||| |||||||| |||| ||||||||||||||        ||||||||| |||| |||||||  ||||||||||||||||| |||||||||  |||||    
T  42558338 ttctttcccaattctaaaaacttcaaaccctaat-tcttttgattgaatccaaaatccaaaatccgcaaaatttcttcaagcataattgttcagattgaa 42558436  T
Q  283 tctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaat 382  Q
    |||||||||||| | |||||| ||| |||||||| || |||| ||| |  ||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  42558437 tctgaaatgatgggtggtgggcgtatgggcaaaatcagttatcaaatttgagcttcatcttcaagctccatgtttaatggtgatgtgagagtgcttgaat 42558536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 86 - 316
Target Start/End: Complemental strand, 51123342 - 51123115
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||||||||| ||||||||||||||||||||||||||||   ||||| |||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  51123342 tttcttcctcaaatgtataaaattggaaccctaattttacaatcattaatccacactccaaaattcccaaaaattcttccaataattagaggtaacgttc 51123243  T
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatct 285  Q
    |||||||||| ||| | | ||||||||||||        ||||||||||||    |||||| |||||||| ||||||  |||| ||||  | ||||||||    
T  51123242 ttccccaattgaaataacctcaaaccctaat--tttttgattgaatccgaatcaaaaaatccccaaaattccttcaaataaaactgttgtaattgaatct 51123145  T
Q  286 gaaatgatgaggggtgggtgtaagggcaaaa 316  Q
    ||||||||| |||||||||||| ||||||||    
T  51123144 gaaatgatg-ggggtgggtgtatgggcaaaa 51123115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 86 - 386
Target Start/End: Original strand, 11152837 - 11153136
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| ||||| |||||||||||||||||||||||||||| | ||||||||||||||||||  ||||| |||||| |||||||||  ||| | ||||    
T  11152837 tttcttccccaaatgtataaaattggaaccctaattttacaatgtttaatctacactccaaaatctccaaattttcttccaataattaagggtcatgttc 11152936  T
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatct 285  Q
    |||||||| |||||||  | |||||||||||        |||||||| ||||   ||||||  |||||||  ||||||||||| |||| || ||||||||    
T  11152937 ttccccaaatcaaaaaattgcaaaccctaattttttttaattgaatctgaaaactaaaatctgcaaaattcattcaagcaaaactgttgaaattgaatct 11153036  T
Q  286 gaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgtt 385  Q
     |||||||| |||||||   || ||||||||  |  ||| |||||||| ||| ||||| |  ||||||||||||||||||||||||| ||||||| ||||    
T  11153037 aaaatgatg-ggggtggtcatatgggcaaaaagagctatcaaagtcaaacttcatcttcatcctccatgtttaatggtgatgtgagaatgcttgagtgtt 11153135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 99 - 216
Target Start/End: Complemental strand, 25172818 - 25172701
Alignment:
Q  99 tatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttcttccccaattcaa 198  Q
    ||||||||||| |||||||||||||||||| | |||| ||| |||||||||  |||||||||||| ||||||||||||||||||||||||||||||| ||    
T  25172818 tatataaaattagaaccctaattttacaatctttaatgtacgctccaaaatctccaaaatttcttccaataattagtggtaacgttcttccccaatttaa 25172719  T
Q  199 aaagcttcaaaccctaat 216  Q
    |||  |||||||||||||    
T  25172718 aaaaattcaaaccctaat 25172701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 82 - 392
Target Start/End: Complemental strand, 31803500 - 31803190
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| ||| | ||||||||||||||  |||||  ||||| || ||||||||||| | |||    |||||||| | ||||||| ||||||       
T  31803500 gctctttcttccccaattgtataaaattggaacgttaattacacaatctgcaatctacactctataatcatgaaaatttcctccaataataagtggttca 31803401  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnn-attgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttg 280  Q
    ||||| |||||||||||||| ||||||||||||||         | |||||| ||||  || ||||  ||||||||||| |||||||| | || || |||    
T  31803400 gttctgccccaattcaaaaaacttcaaaccctaatttttttcgtagtgaatctgaaagccagaatcctcaaaatttcttgaagcaaaactattgaaattg 31803301  T
Q  281 aatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttga 380  Q
    |||||||||||||| ||||||||  || ||  |||| |  |||||||||||||| || ||||| |||||||| ||||||| ||| |||||||||||||||    
T  31803300 aatctgaaatgatgtggggtgggaatatggaaaaaa-cggttatgaaagtcaagtttcatcttcaagctccaagtttaatagtgttgtgagagtgcttga 31803202  T
Q  381 atgttgatgtcc 392  Q
    |||||| |||||    
T  31803201 atgttggtgtcc 31803190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 82 - 392
Target Start/End: Original strand, 46637056 - 46637365
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| ||| | ||||||||||||||| |||||  ||||| || ||||||||||| | |||    |||||||| | ||||||| ||||||       
T  46637056 gctctttcttccccaatt-tataaaattggaaccttaattacacaatctgcaatctacactctataatcatgaaaatttcctccaataataagtggttca 46637154  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnn-attgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttg 280  Q
    ||||| |||||||||||||| ||||||||||||||         | |||||  ||||  || ||||  ||||||||||| |||||||| | || || |||    
T  46637155 gttctaccccaattcaaaaaacttcaaaccctaatttttttcgtagtgaatttgaaagccagaatcctcaaaatttcttgaagcaaaactattgaaattg 46637254  T
Q  281 aatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttga 380  Q
    ||||| |||||||| ||||||||  || ||  |||| |  ||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||    
T  46637255 aatctaaaatgatgtggggtgggaatatggaaaaaa-cggttatgaaagtcaagcttcatcttcaagctccaagtttaatggtgttgtgagagtgcttga 46637353  T
Q  381 atgttgatgtcc 392  Q
    |||||| |||||    
T  46637354 atgttggtgtcc 46637365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 82 - 367
Target Start/End: Original strand, 45379374 - 45379658
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    ||||| |||||| ||| | ||||||||| |||||||||||  ||||| || |||||||| || |||||  || ||||||| | ||||||| ||||||       
T  45379374 gctctgtcttccccaattgtataaaattagaaccctaattacacaatttgcaatctacattctaaaatcacctaaatttcctccaataataagtggtcta 45379473  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 281  Q
    |||||||||||||||| ||| ||| ||||||||||        |||||||| ||||  |||||||  ||||||||||| |||||||| | || || ||||    
T  45379474 gttcttccccaattcagaaaacttgaaaccctaatttttttgtattgaatctgaaagccaaaatccacaaaatttcttgaagcaaaactattgaaattga 45379573  T
Q  282 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatg 367  Q
    ||||||||||| | ||||||||  || ||| ||||    ||||||||||| ||||| |||||||||||||| |||||| |||||||    
T  45379574 atctgaaatgaag-ggggtgggaatatgggaaaaaattgttatgaaagtcgagcttcatctttaagctccaagtttaacggtgatg 45379658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 88 - 367
Target Start/End: Complemental strand, 44159088 - 44158807
Alignment:
Q  88 tcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttctt 187  Q
    |||||| ||| | |||||||||| |||||| |||  ||||| || |||||||| || |||||  || ||||||| | ||||||| |||||| | ||||||    
T  44159088 tcttccccaattgtataaaattgaaaccctgattacacaatctgcaatctacattctaaaatcacctaaatttcctccaataataagtggtcaagttctt 44158989  T
Q  188 ccccaattcaaaaagcttcaaaccctaatannnnnnn--attgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatct 285  Q
    |||||||||||||| ||| ||||||||||          |||||||| ||||  |||||||  ||||||||||| |||||||| | || || ||||||||    
T  44158988 ccccaattcaaaaaacttgaaaccctaattttttttcgtattgaatctgaaagccaaaatccacaaaatttcttgaagcaaaactattgaaattgaatct 44158889  T
Q  286 gaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatg 367  Q
    ||||||| | ||||||||  || ||| ||||  | ||||||||||| ||||| ||||| ||||| || ||||||||||||||    
T  44158888 gaaatgaaggggggtgggattatgggaaaaaatagttatgaaagtcgagcttcatcttcaagcttcaagtttaatggtgatg 44158807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 82 - 367
Target Start/End: Complemental strand, 42136045 - 42135761
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    ||||| |||||| ||| | ||||||||||||| |||||||  ||||| || |||||||| || |||||  || ||||||  | ||||||| |||| |       
T  42136045 gctctatcttccccaattgtataaaattggaatcctaattacacaatctgcaatctacattctaaaatcacctaaattttctccaataataagtgctcca 42135946  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 281  Q
    |||||||||||||||||||| ||| ||||| ||||        |||||||| |||| |||||||   ||||||||||| |||||||| | || || ||||    
T  42135945 gttcttccccaattcaaaaaacttgaaacc-taattttttcgtattgaatctgaaagtcaaaattcacaaaatttcttgaagcaaaactattgaaattga 42135847  T
Q  282 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatg 367  Q
    ||||||||||| | ||||||||  || ||| ||||    ||||||||||| ||||| ||||| |||||||| ||||||||||||||    
T  42135846 atctgaaatgaaggggggtgggaatatgggaaaaaattgttatgaaagtcgagcttcatcttcaagctccaagtttaatggtgatg 42135761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 82 - 214
Target Start/End: Complemental strand, 6576906 - 6576774
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| ||| | |||||||||||||||||||||  ||||| || ||||||||||| |||||  || ||||||| | ||||||| ||||||       
T  6576906 gctctttcttccccaattgtataaaattggaaccctaattaaacaatctgcaatctacactctaaaatcacctaaatttcctccaataataagtggtcca 6576807  T
Q  182 gttcttccccaattcaaaaagcttcaaacccta 214  Q
    ||| || ||||||||||||| ||||||||||||    
T  6576806 gttttttcccaattcaaaaaacttcaaacccta 6576774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 249 - 392
Target Start/End: Original strand, 18183063 - 18183205
Alignment:
Q  249 caaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagc 348  Q
    ||||||||||| |||||||| | || || ||| ||||||||||||| ||||||||   | ||| |||| || ||||||||||| || || ||||| ||||    
T  18183063 caaaatttcttgaagcaaaactattgaaattggatctgaaatgatg-ggggtgggaacatgggaaaaaacagttatgaaagtcgagtttcatcttcaagc 18183161  T
Q  349 tccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 392  Q
    |||| |||||||||||||||||||  |||||||||||| |||||    
T  18183162 tccaagtttaatggtgatgtgagaaagcttgaatgttggtgtcc 18183205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 367
Target Start/End: Original strand, 35478378 - 35478660
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||||||| | | |||||||| ||||||||||  ||||| |   |||||||||| |||||  || ||||||| | ||||||| ||||||       
T  35478378 gctctttcttcctcaattgtttaaaattgaaaccctaattacacaatct---atctacactctaaaatcacctaaatttcctccaataataagtggttta 35478474  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 281  Q
    ||| |||||||||||||||| ||||||||||||||        ||||||||  |||  |||||||  ||||| ||||| |||||||| | || || |  |    
T  35478475 gtttttccccaattcaaaaaacttcaaaccctaattttttcgtattgaatcttaaaaccaaaatcctcaaaacttcttgaagcaaaactattgaaataaa 35478574  T
Q  282 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatg 367  Q
    |||  |||||||| ||||||||  || ||| ||||    ||||||||||| ||||| ||||| ||||| || ||||||||||||||    
T  35478575 atccaaaatgatggggggtgggaatatgggaaaaaattgttatgaaagtcgagcttcatcttgaagcttcaagtttaatggtgatg 35478660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 50554500 - 50554634
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| |||||||||||| ||||||||||||| ||| ||| ||| | ||| ||| |||||| ||| ||||||||| ||  ||||  ||  ||     
T  50554500 gctctttcttccccaaatatataaatttggaaccctaatgttataatttgttacctagacttcaaaatcccccaaatttcttacatgaattgatgtcaat 50554599  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||||||||| ||| ||||||||||    
T  50554600 gttcttccccaattcaaaaaacttaaaaccctaat 50554634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 82 - 213
Target Start/End: Original strand, 33679549 - 33679680
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||||||| | || ||||||||||||||||||  ||||| || ||| ||||||| |||||  || ||||||| | ||||||| | | ||       
T  33679549 gctctttcttcctcaattgtacaaaattggaaccctaattacacaatctgcaatatacactctaaaatcacctaaatttcctccaataataactagtcca 33679648  T
Q  182 gttcttccccaattcaaaaagcttcaaaccct 213  Q
    |||||||||||||||||||| |||||||||||    
T  33679649 gttcttccccaattcaaaaaacttcaaaccct 33679680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 31237139 - 31237273
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| |||||||||||  ||||||||||||| ||| ||| ||| | ||| | | |||||| ||| ||||||||| || |||||  ||  ||     
T  31237139 gctctttcttccccaaatatataattttggaaccctaatgttataatttgttacctagagttcaaaatcccccaaatttcttccattaattgatgtcaat 31237238  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||||||||| ||| ||||||||||    
T  31237239 gttcttccccaattcaaaaaacttaaaaccctaat 31237273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 18058121 - 18058254
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||| ||||| ||||||||||||||| |||||||||||| ||| ||||| | | |||||| | ||||| |||||  | |||||  ||  |||     
T  18058121 ctctttcttccccaaatttataaaattggaaccttaattttacaatttgtcatctagagttcaaaatcctcaaaacttcttcaattaattgatgacaaca 18058220  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||| |||| ||||||| ||||||    
T  18058221 ttcttccccaattctaaaaacttcaaaacctaat 18058254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 216
Target Start/End: Complemental strand, 15106116 - 15105986
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| |||||||||||| |||||| |||||| ||| |||  || | ||||| | |||||| ||||||||||||| ||  ||||  ||  || ||||    
T  15106116 tttcttccccaaatatataaatttggaatcctaatgttataattcgtcacctacagttcaaaatccccaaaatttcttacatgaattgatgccaaagttc 15106017  T
Q  186 ttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||||| ||| ||||||||||    
T  15106016 ttccccaattcaaaaaacttaaaaccctaat 15105986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 6817200 - 6817333
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||| |||||||||||| || |||||||||| ||| ||| ||| | ||| | | ||||||||| |||||||||| ||  ||||  ||  || |    
T  6817200 ctctttcttccccaaatatataaatttagaaccctaatgttataatttgttacctagagttcaaaattcctaaaatttcttccatgaattgatgtcaatg 6817299  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    ||||||||||||||||||  ||| ||||||||||    
T  6817300 ttcttccccaattcaaaagacttaaaaccctaat 6817333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 18180818 - 18180900
Alignment:
Q  133 aatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaa 215  Q
    |||||||||||||||||  |||||||||| | || |||| ||||||    ||||||||||||||||||| |||||||||||||    
T  18180818 aatctacactccaaaatcaccaaaatttcctccagtaataagtggtccgattcttccccaattcaaaaaacttcaaaccctaa 18180900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 45045232 - 45045365
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||| |||||||||||| ||||||||||||| ||| ||| | | |  || | | |||||| ||| ||||||||| ||  ||||  ||  || |    
T  45045232 ctctttcttccccaaatatataaatttggaaccctaatgttataatttatcacatagagttcaaaatcccccaaatttcttccatgaattgatgtcaatg 45045331  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    ||||||||||||||||||| ||| ||||||||||    
T  45045332 ttcttccccaattcaaaaaacttaaaaccctaat 45045365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 216
Target Start/End: Complemental strand, 27952282 - 27952167
Alignment:
Q  101 tataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttcttccccaattcaaaa 200  Q
    |||||||||| ||||||||||  ||||| | ||||||||| || || ||  |  ||||||| | ||||||| ||||||   |||||||||||||||||||    
T  27952282 tataaaattgtaaccctaattacacaatttttaatctacattctaatatcacttaaatttcctccaataataagtggtccagttcttccccaattcaaaa 27952183  T
Q  201 agcttcaaaccctaat 216  Q
    | ||| ||||||||||    
T  27952182 aacttaaaaccctaat 27952167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 216
Target Start/End: Complemental strand, 2870845 - 2870712
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||| | ||||||||| || ||||||||||||| ||| ||| ||| | ||| | | |||||| ||| ||||||||| ||  ||||  ||  ||     
T  2870845 gctctttctttcccaaatatatcaatttggaaccctaatgttataatttgtcacctagagttcaaaatcccccaaatttcttccatgaattgatgtcaat 2870746  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||||||||| ||| ||||||||||    
T  2870745 gttcttccccaattcaaaaa-cttaaaaccctaat 2870712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 3012175 - 3012309
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| |||||||||||| ||||||||||||| ||  ||| ||| | ||| | | ||||||   | ||||||||| ||  ||||  ||  ||     
T  3012175 gctctttcttccccaaatatataaatttggaaccctaatgttctaatttgtcacctatagttcaaaatctaccaaatttcttccatgaattgatgtcaat 3012274  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||||||||| ||| ||||||||||    
T  3012275 gttcttccccaattcaaaaaacttaaaaccctaat 3012309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 367
Target Start/End: Original strand, 33679696 - 33679814
Alignment:
Q  249 caaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagc 348  Q
    ||||||||||| |||||||| | || || |  |||| ||||||||| ||||||||  ||  || |||| |  ||||||||||| ||||| ||||| ||||    
T  33679696 caaaatttcttgaagcaaaactattgaaataaaatccgaaatgatggggggtgggaatataggaaaaaactgttatgaaagtcgagcttcatcttcaagc 33679795  T
Q  349 tccatgtttaatggtgatg 367  Q
    |||| ||||||||||||||    
T  33679796 tccaagtttaatggtgatg 33679814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 25172944 - 25172876
Alignment:
Q  9 agcagagactaatgtggtcgacagtgaccaaaatttccaaggatcaaattaattgatttgtagaaaatg 77  Q
    ||||||||||||| ||  ||| |||||||||||||||||||||  || || ||||||||| ||||||||    
T  25172944 agcagagactaatttgaccgatagtgaccaaaatttccaaggacgaatttgattgatttgcagaaaatg 25172876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 124
Target Start/End: Original strand, 33599542 - 33599580
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaatttta 124  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  33599542 tttcttccacaaatatataaatttggaaccctaatttta 33599580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 86 - 386
Target Start/End: Complemental strand, 39922806 - 39922506
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||| |||||| |||||||||  ||| ||||||    
T  39922806 tttcttccccaaatatataaaattggaaccctaattttacaatgtgtaatctacactccaaaatctccaaattttcttccaataattaagggtcacgttc 39922707  T
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatct 285  Q
    |||||||| |||||||  | |||||||||||        |||||||| ||||  |||||||  |||||||  ||||||||||| |||| || ||||||||    
T  39922706 ttccccaaatcaaaaaattacaaaccctaattttttttaattgaatctgaaaaccaaaatctgcaaaattcattcaagcaaaactgttgaaattgaatct 39922607  T
Q  286 gaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgtt 385  Q
     |||||||| | |||||   || ||||||||| |  ||| |||||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||||    
T  39922606 aaaatgatgggaggtggtcatatgggcaaaaggagctatcaaagtcaagcttcatcttcatcctccatgtttaatggtgatgtgagagtgcttgaatgtt 39922507  T
Q  386 g 386  Q
    |    
T  39922506 g 39922506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 86 - 386
Target Start/End: Complemental strand, 39084951 - 39084651
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||  ||||| |||||| |||||||||  ||| ||||||    
T  39084951 tttcttccccaaatatataaaattggaactctaattttacaatgtgtaatctacactccaaaatctccaaattttcttccaataattaagggtcacgttc 39084852  T
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatct 285  Q
    |||||||| |||||||  | |||||||||||        |||||||| ||||  |||||||  |||||||  ||||||||||| |||| || ||||||||    
T  39084851 ttccccaaatcaaaaaattacaaaccctaattttttttaattgaatctgaaaaccaaaatctgcaaaattcattcaagcaaaactgttgaaattgaatct 39084752  T
Q  286 gaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgtt 385  Q
     |||||||| | |||||   || ||||||||  |  ||| |||||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||||    
T  39084751 aaaatgatgggaggtggtcatatgggcaaaaagagctatcaaagtcaagcttcatcttcatcctccatgtttaatggtgatgtgagagtgcttgaatgtt 39084652  T
Q  386 g 386  Q
    |    
T  39084651 g 39084651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 86 - 386
Target Start/End: Complemental strand, 39190618 - 39190318
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||| |||||| |||||||||  ||| ||||||    
T  39190618 tttcttccccaaatatataaaattggaaccctaattttacaatgtgtaatctacactccaaaatctccaaattttcttccaataattaagggtcacgttc 39190519  T
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatct 285  Q
    |||||||| |||||||  | |||||||||||        |||||||| ||||  |||||||  |||||||  ||||||||||| | || || ||||||||    
T  39190518 ttccccaaatcaaaaaattgcaaaccctaattttttttaattgaatctgaaaaccaaaatctgcaaaattcattcaagcaaaactattgaaattgaatct 39190419  T
Q  286 gaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgtt 385  Q
     |||||||| | |||||   || ||||||||  |  ||| |||||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||||    
T  39190418 aaaatgatgggaggtggtcatatgggcaaaaagagctatcaaagtcaagcttcatcttcatcctccatgtttaatggtgatgtgagagtgcttgaatgtt 39190319  T
Q  386 g 386  Q
    |    
T  39190318 g 39190318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 86 - 386
Target Start/End: Original strand, 42879576 - 42879876
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||| |||||| |||||||||  ||| ||||||    
T  42879576 tttcttccccaaatatataaaattggaaccctaattttacaatgtgtaatctacactccaaaatctccaaattttcttccaataattaagggtcacgttc 42879675  T
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatct 285  Q
    |||||||| |||||||  | |||||||||||        |||||||| ||||  |||||||  |||||||  ||||||||||| |||| || ||||||||    
T  42879676 ttccccaaatcaaaaaattgcaaaccctaattttttttaattgaatctgaaaaccaaaatctgcaaaattcattcaagcaaaactgttgaaattgaatct 42879775  T
Q  286 gaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgtt 385  Q
     |||||||| | |||||   || ||||||||  |  ||| |||||||||||| ||||| |  |||||||||||||||||||||||||||| |||||||||    
T  42879776 aaaatgatgggaggtggtcatatgggcaaaaagagctatcaaagtcaagcttcatcttcatcctccatgtttaatggtgatgtgagagtgattgaatgtt 42879875  T
Q  386 g 386  Q
    |    
T  42879876 g 42879876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 86 - 386
Target Start/End: Original strand, 43778681 - 43778979
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||| |||||| |||||||||  ||| ||||||    
T  43778681 tttcttcgccaaatatataaaattggaaccctaattttacaatgtgtaatctacactccaaaatctccaaattttcttccaataattaagggtcacgttc 43778780  T
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatct 285  Q
    |||||||| |||||||  | |||||||||||        |||||||| ||||  |||||||  |||||||  ||||||||||| |||| || ||||||||    
T  43778781 ttccccaa-tcaaaaaattgcaaaccctaat-ttttttaattgaatctgaaaaccaaaatctgcaaaattcattcaagcaaaactgttgaaattgaatct 43778878  T
Q  286 gaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgtt 385  Q
     |||||||| | |||||   || ||||||||| |  ||| |||||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||||    
T  43778879 aaaatgatgggaggtggtcatatgggcaaaaggagctatcaaagtcaagcttcatcttcatcctccatgtttaatggtgatgtgagagtgcttgaatgtt 43778978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 86 - 386
Target Start/End: Complemental strand, 5485851 - 5485551
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||  ||||| |||||| |||||||||  ||| ||||||    
T  5485851 tttcttccccaaatatataaaattggaaccctaattttaccatgtgtaatctacactccaaaatctccaaattttcttccaataattaagggtcacgttc 5485752  T
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatct 285  Q
    |||||||| |||||||  | |||||||||||        |||||||| ||||  |||||||  |||||||  ||||||||||| |||| || ||||||||    
T  5485751 ttccccaaatcaaaaaattacaaaccctaattttttttaattgaatctgaaaaccaaaatctgcaaaattcattcaagcaaaaatgttgaaattgaatct 5485652  T
Q  286 gaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgtt 385  Q
     |||||||| | || ||   || ||||||||  |  ||| ||||||||||||  |||| |  ||||||||||||||||||||||||||||||||||||||    
T  5485651 aaaatgatgggaggcggtcatatgggcaaaaagagctatcaaagtcaagcttcgtcttcatcctccatgtttaatggtgatgtgagagtgcttgaatgtt 5485552  T
Q  386 g 386  Q
    |    
T  5485551 g 5485551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 86 - 385
Target Start/End: Original strand, 44993100 - 44993399
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||   |||| |||||| |||||||||  ||| ||||||    
T  44993100 tttcttccccaaatatataaaattggaatcctaattttacaatgtgtaatctacactccaaaatcttcaaattttcttccaataattaagggtcacgttc 44993199  T
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatct 285  Q
    |||||||| |||||||  | |||||||||||        |||||||| ||||  |||||||  |||||||  ||||||||||| |||| || ||||||||    
T  44993200 ttccccaaatcaaaaaattgcaaaccctaattttttttaattgaatctgaaaaccaaaatctgcaaaattcattcaagcaaaactgttgaaattgaatct 44993299  T
Q  286 gaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgtt 385  Q
     |||||||| | |||||   || ||||||||  |  ||| ||||||||| || ||||| |  ||||||||||||||||||||||| ||||||||||||||    
T  44993300 aaaatgatgggaggtggtcatatgggcaaaaagagctatcaaagtcaagtttcatcttcatcctccatgtttaatggtgatgtgaaagtgcttgaatgtt 44993399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 87 - 216
Target Start/End: Original strand, 13438146 - 13438275
Alignment:
Q  87 ttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttct 186  Q
    ||||||| |||||||||||||| | ||||||||||||||||| | |||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  13438146 ttcttccccaaatatataaaatagaaaccctaattttacaatctttaatgtacactccaaaattcccaaaatttcttccaataattagtggtaactttct 13438245  T
Q  187 tccccaattcaaaaagcttcaaaccctaat 216  Q
    ||||||||||||||| ||||||||||||||    
T  13438246 tccccaattcaaaaaacttcaaaccctaat 13438275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 86 - 386
Target Start/End: Complemental strand, 32653430 - 32653130
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    ||||||||  ||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||  ||||| |||||| |||||||||  ||| | ||||    
T  32653430 tttcttcccaaaatatataaaattgaaactctaattttacaatgtgtaatctacactccaaaatctccaaattttcttccaataattaagggtcatgttc 32653331  T
Q  186 ttccccaattcaaaaagcttcaaaccctaa-tannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatc 284  Q
    |||||||| |||||||  | |||||||||| |        |||||||  ||||  |||||||  |||||||  ||||||||||| |||| || |||||||    
T  32653330 ttccccaaatcaaaaaattacaaaccctaatttttttttaattgaatatgaaaaccaaaatctgcaaaattcattcaagcaaaactgttgaaattgaatc 32653231  T
Q  285 tgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgt 384  Q
    | |||||| | |||||||   || ||||||||  |  ||| |||||||||||| ||||| |  || ||||||||||||||||||||||||||| ||||||    
T  32653230 taaaatgaag-ggggtggtcatatgggcaaaaagagctatcaaagtcaagcttcatcttcatccttcatgtttaatggtgatgtgagagtgctcgaatgt 32653132  T
Q  385 tg 386  Q
    ||    
T  32653131 tg 32653130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 97 - 282
Target Start/End: Complemental strand, 25994897 - 25994708
Alignment:
Q  97 aatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttcttccccaattc 196  Q
    |||||||||||||||||| |||| |||||||| |||||||||||||||||||| | ||||||||||| ||||||||||||||||| ||||||| ||||||    
T  25994897 aatatataaaattggaactctaaatttacaatctgtaatctacactccaaaatcctcaaaatttcttccaataattagtggtaacattcttcctcaattc 25994798  T
Q  197 aaaaagcttcaaaccctaa----tannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaa 282  Q
    ||||| || |||||||| |    |        |||||||||||||  || |||| ||||||||||||||||||||| ||||||| |||||    
T  25994797 aaaaaactccaaaccctgatttttttttttttattgaatccgaaaaccagaatccccaaaatttcttcaagcaaaactgttcaaattgaa 25994708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 86 - 216
Target Start/End: Original strand, 230740 - 230869
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||  ||||||||||||||||| | |||||||||||||| |||||||||||||||||| | ||||||||||||| |||||||||||||||||||||    
T  230740 tttcttctccaaatatataaaattggcatcctaattttacaatctgtaatctacactccaaagtccccaaaatttcttccaataattagtggtaacgttc 230839  T
Q  186 ttccccaattcaaaaagcttcaaaccctaat 216  Q
    || || ||||||||||  |||||||||||||    
T  230840 tt-cctaattcaaaaaatttcaaaccctaat 230869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 82 - 392
Target Start/End: Complemental strand, 4520270 - 4519959
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||  ||| |||||||||||||||||||||||  | ||| || ||||||||||| |||||  |||||||||| |   ||||| ||||||       
T  4520270 gctctttcttcgccaattatataaaattggaaccctaattacaaaatttgcaatctacactctaaaatcaccaaaatttcctctgataataagtggttca 4520171  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnn--attgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaattt 279  Q
    ||||||| |||||||||||| ||| ||||||||||          |||||||| ||||  |||||||  ||||||||||| |||||||| | || ||  |    
T  4520170 gttcttctccaattcaaaaaacttgaaaccctaatttttttttgtattgaatctgaaagccaaaatcctcaaaatttcttgaagcaaaactattgaaaat 4520071  T
Q  280 gaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttg 379  Q
    |||| |||||||||| |||||||   || ||| |||| || ||||||||||| ||||| ||||| |||||||| ||||||||||||||| | ||||||||    
T  4520070 gaatatgaaatgatg-ggggtggaaatatgggaaaaaacagttatgaaagtcgagcttcatcttcaagctccaagtttaatggtgatgtcaaagtgcttg 4519972  T
Q  380 aatgttgatgtcc 392  Q
    ||||||| |||||    
T  4519971 aatgttggtgtcc 4519959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 101 - 367
Target Start/End: Original strand, 44556917 - 44557183
Alignment:
Q  101 tataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttcttccccaattcaaaa 200  Q
    |||||||||||||  ||||||  ||||| || ||||||||||| |||||  || ||||||| | ||||||| ||||||   |||||||||||||||||||    
T  44556917 tataaaattggaattctaattacacaatctgcaatctacactctaaaatcacctaaatttcctccaataataagtggtccagttcttccccaattcaaaa 44557016  T
Q  201 agcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggt 300  Q
    | ||||||||||||||        ||||||||  |||  |||||||  ||||| ||||| |||||||| | || || |  ||||  ||||||||||||||    
T  44557017 aacttcaaaccctaattttttcgtattgaatcttaaaaccaaaatcctcaaaaattcttgaagcaaaactattgaaataaaatccaaaatgatgaggggt 44557116  T
Q  301 gggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatg 367  Q
    |||  || ||| |||| |  ||||||||||| ||||| |||||  ||||||| ||||||||||||||    
T  44557117 gggaatatgggaaaaaactgttatgaaagtcgagcttcatcttctagctccaagtttaatggtgatg 44557183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 39294625 - 39294553
Alignment:
Q  143 ccaaaattcccaaaatttctttcaataattagtggtaacgttcttccccaattcaaaaagcttcaaaccctaa 215  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39294625 ccaaaatccccaaaatttcttccaataattagtggtaacgttcttccccaattcaaaaaacttcaaaccctaa 39294553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 82 - 366
Target Start/End: Complemental strand, 27626530 - 27626246
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| ||| | |||||||||||||||||||||  ||||| |  ||||||||||| |||||     ||||||| | ||||||| ||||||       
T  27626530 gctctttcttccccaattgtataaaattggaaccctaattacacaatctacaatctacactctaaaatcatttaaatttcctccaataataagtggtcca 27626431  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 281  Q
     ||||||||||||||||||| ||||||||||||||        ||||||||  |||  |||||||  ||||||||||| |||||||| | || || |  |    
T  27626430 attcttccccaattcaaaaaacttcaaaccctaattttttcgtattgaatcttaaaaccaaaatcctcaaaatttcttgaagcaaaactattgaaataaa 27626331  T
Q  282 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgat 366  Q
    |||  |||||||| ||||||||  || ||  |||| |  ||||||||||| ||||| ||||| |||||||| |||||||||||||    
T  27626330 atccaaaatgatggggggtgggaatatggcaaaaaactgttatgaaagtcgagcttcatcttcaagctccaagtttaatggtgat 27626246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 83 - 372
Target Start/End: Original strand, 51041027 - 51041314
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||| ||| | |||||||||| ||||||||||  ||||| || |||||||| ||||||||  |||  ||||| | |  |||| ||||||   |    
T  51041027 ctctttcttccccaattgtataaaattgtaaccctaattacacaatctgcaatctacattccaaaatcaccatgatttcctccggtaataagtggttcgg 51041126  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaa 282  Q
    ||||||||| ||||| ||| |||||||||||||         |||||||| |||| ||||||||  |||||    || |||||||| | || || |||||    
T  51041127 ttcttcccctattcataaatcttcaaaccctaactttttcgcattgaatctgaaagtcaaaatcctcaaaaaaatttgaagcaaaactattgaaattgaa 51041226  T
Q  283 tctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgaga 372  Q
    | ||||||||||  |||||||  || ||| |||| || ||||||||||| || || ||||| |||||||| |||||||||||||||||||    
T  51041227 tatgaaatgatg--gggtgggaatatgggaaaaaacagttatgaaagtcgagtttcatcttcaagctccaagtttaatggtgatgtgaga 51041314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 84 - 196
Target Start/End: Original strand, 28100865 - 28100977
Alignment:
Q  84 tctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgt 183  Q
    |||||||||| ||||| |||||||||| ||| |||||| |||||| | ||||||| | |||||||||||||||||||||| || |||||  ||  |||||    
T  28100865 tctttcttccccaaatctataaaattgaaactctaattgtacaatttataatctagagtccaaaattcccaaaatttcttccattaattgatgacaacgt 28100964  T
Q  184 tcttccccaattc 196  Q
    |||||||||||||    
T  28100965 tcttccccaattc 28100977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 84 - 216
Target Start/End: Complemental strand, 13450107 - 13449984
Alignment:
Q  84 tctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgt 183  Q
    |||||||||  ||||| |||||||||| ||||||||||||||||| | |||| ||||||||||||||         |||| ||||||||| |  |||| |    
T  13450107 tctttcttcaccaaatgtataaaattgaaaccctaattttacaatctttaatgtacactccaaaatt---------tcttccaataattatttttaacat 13450017  T
Q  184 tcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||||||| ||||||||||||||    
T  13450016 tcttccccaattcaaaaaacttcaaaccctaat 13449984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 2691684 - 2691818
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| |||||||||||| ||||||||||||| ||| ||| ||| | ||| | | ||||||  |||||||||||| || |||||  ||  ||     
T  2691684 gctctttcttccccaaatatataaatttggaaccctaatgttataatttgtcacctagagttcaaaatctccaaaatttcttccattaattgatgacaaa 2691783  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaat 216  Q
     ||||||||||||||||||| ||| ||||||||||    
T  2691784 attcttccccaattcaaaaaacttaaaaccctaat 2691818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 20820290 - 20820423
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||| |||||||||||||| ||||||||||||||||| ||| ||| | ||| | |  ||||| ||||||||||||| || |||||  ||  || |    
T  20820290 ctctttctttctcaaatatataaatttggaaccctaattttataatttgtcacctaaagtttaaaatccccaaaatttcttccactaattgatgacaaag 20820389  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||| |||||||||||| ||| ||| ||||||    
T  20820390 ttcttctccaattcaaaaaacttaaaaacctaat 20820423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 360
Target Start/End: Complemental strand, 35997568 - 35997284
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    ||||| |||||| ||| | |||||||||||||||||||||  ||||| || |||||||| || || ||  || ||||||| | ||||||| ||||||       
T  35997568 gctctgtcttccccaattgtataaaattggaaccctaattacacaatctgcaatctacattctaatataacctaaatttcctccaataataagtggtcca 35997469  T
Q  182 gttc------ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttca 275  Q
    ||||      |||||||||| ||||| ||| |||||||||         |||||||| ||||  |||||||  ||||||||||| |||||||| | || |    
T  35997468 gttccagttcttccccaatttaaaaaacttgaaaccctaaatttttcgtattgaatctgaaagccaaaatccacaaaatttcttgaagcaaaactattga 35997369  T
Q  276 atttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaat 360  Q
    | ||||||||||||||||| ||||||||  || ||| |||| |  ||| ||||||| ||||| ||||| ||||| || |||||||    
T  35997368 aattgaatctgaaatgatggggggtgggaatatgggaaaaaactgttaagaaagtcgagcttcatcttcaagctgcaagtttaat 35997284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 39294721 - 39294645
Alignment:
Q  33 tgaccaaaatttccaaggatcaaattaattgatttgtagaaaatgctttgctctttcttcctcaaatatataaaatt 109  Q
    |||||||||||||||| |   ||||| ||||||||| |||||||||||| ||||||||||| |||||||||||||||    
T  39294721 tgaccaaaatttccaaaggctaaattgattgatttgcagaaaatgcttttctctttcttccccaaatatataaaatt 39294645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 88 - 216
Target Start/End: Complemental strand, 47942541 - 47942413
Alignment:
Q  88 tcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttctt 187  Q
    |||||| ||| | |||||||||||||||||||||  ||||| | ||||||||| || || ||  || ||||||| | ||||||| ||||||   ||||||    
T  47942541 tcttccccaattgtataaaattggaaccctaattacacaatctataatctacattctaatatcacctaaatttcctccaataataagtggtccagttctt 47942442  T
Q  188 ccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||| ||| ||||||||||    
T  47942441 ccccaattcaaaaaacttaaaaccctaat 47942413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 54387670 - 54387537
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    |||||||| ||  ||||||||||| ||||||||||||| ||||||| ||| | ||| | | |||||| | ||||||||||| ||  ||||  ||  || |    
T  54387670 ctctttctgccctaaatatataaatttggaaccctaatgttacaatttgtcacctagagttcaaaatcctcaaaatttcttccatgaattgatgccaaag 54387571  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    ||||||||||||||||||| ||| ||||||||||    
T  54387570 ttcttccccaattcaaaaaacttaaaaccctaat 54387537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 385
Target Start/End: Complemental strand, 10544605 - 10544498
Alignment:
Q  278 ttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgct 377  Q
    |||||| |||||||||| | |||||| ||| |||||||| || || | |||||| | ||| ||||| |||||| ||||||||||||||||| ||| || |    
T  10544605 ttgaatatgaaatgatgggtggtgggcgtatgggcaaaaacagttctcaaagtcgaacttcatcttcaagctctatgtttaatggtgatgtcagaatgtt 10544506  T
Q  378 tgaatgtt 385  Q
    ||||||||    
T  10544505 tgaatgtt 10544498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 216
Target Start/End: Original strand, 44793243 - 44793358
Alignment:
Q  101 tataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttcttccccaattcaaaa 200  Q
    |||||||||||||||||||||  ||||| | ||||||||| || || ||  |  ||||||| | ||||||| ||||||   |||||||||||||||||||    
T  44793243 tataaaattggaaccctaattacacaatctataatctacattctaatatcacataaatttcctccaataataagtggtccagttcttccccaattcaaaa 44793342  T
Q  201 agcttcaaaccctaat 216  Q
    | ||| ||||||||||    
T  44793343 aacttaaaaccctaat 44793358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 11254378 - 11254512
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| |||||||||||| ||| ||||||||| ||| ||| ||| | ||| | | |||||| ||| ||| ||||| || |||||  ||  ||     
T  11254378 gctctttcttccccaaatatataaatttgaaaccctaatgttataatttgtcacctagagttcaaaatcccccaaaattcttccattaattgatgtcaat 11254477  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||||||||| ||  ||||||||||    
T  11254478 gttcttccccaattcaaaaaactcaaaaccctaat 11254512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 10544778 - 10544693
Alignment:
Q  88 tcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataatta 173  Q
    |||||| ||||| ||||||||||||||||||||||| ||||   |  |||||| |||||||| ||||||||||||| || ||||||    
T  10544778 tcttccccaaatctataaaattggaaccctaatttttcaatccctcgtctacagtccaaaatccccaaaatttcttccattaatta 10544693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 26397715 - 26397635
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctt 163  Q
    |||||||||||||||||| ||||||||| ||||||||| |||| ||| ||| ||||| | | |||||| |||||||||||||    
T  26397715 gctctttcttcctcaaatctataaaattagaaccctaa-tttataatttgtcatctagagttcaaaatccccaaaatttctt 26397635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 49524527 - 49524394
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||| ||| |||||||| ||||||||||||| ||| ||| ||| | ||  | | |||||| ||| ||||||||| ||  ||||  ||  || |    
T  49524527 ctctttcttccccaagtatataaatttggaaccctaatgttataatttgtcacctggagttcaaaatcccccaaatttcttacatgaattgatgtcaatg 49524428  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    ||||||||||||||||||| ||| ||||||||||    
T  49524427 ttcttccccaattcaaaaaacttaaaaccctaat 49524394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 35402069 - 35402202
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| |||||||||||| ||||||||||||| ||| ||| ||| | ||| | | | |||| ||| ||||||||| ||  ||||  ||  ||     
T  35402069 gctctttcttccccaaatatataaatttggaaccctaatgttataatttgtcacctagagttc-aaatcccccaaatttcttccatgaattgatgtcaat 35402167  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||| ||||| ||| ||||||||||    
T  35402168 gttcttccccaattaaaaaaacttaaaaccctaat 35402202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 392
Target Start/End: Complemental strand, 27385980 - 27385940
Alignment:
Q  352 atgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 392  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  27385980 atgtttaatggtgatgtgagagtacttgaatgttggtgtcc 27385940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 230650 - 230728
Alignment:
Q  31 agtgaccaaaatttccaaggatcaaattaattgatttgtagaaaatgctttgctctttcttcctcaaatatataaaatt 109  Q
    |||||||| ||||||||||||  || ||   |||||||  |||||||||||||| |||||||| ||| |||||||||||    
T  230650 agtgaccataatttccaaggactaatttggctgatttgctgaaaatgctttgctttttcttccccaattatataaaatt 230728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 392
Target Start/End: Original strand, 28101018 - 28101179
Alignment:
Q  231 tccgaaattcaaaa-tcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaag 329  Q
    |||||||| ||||| || |||||||||||||||||     ||||||  ||||||||||||||||| | |||||   ||  |||||||  | |||| ||||    
T  28101018 tccgaaatccaaaaatctccaaaatttcttcaagctttggtgttcaggttgaatctgaaatgatgggtggtggca-tataggcaaaaatagttatcaaag 28101116  T
Q  330 tcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 392  Q
     | | ||| ||||| |||||| |||| ||||||||||||||| |||||||||| ||| |||||    
T  28101117 acgatcttcatcttcaagctctatgtataatggtgatgtgagggtgcttgaatattggtgtcc 28101179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 120
Target Start/End: Complemental strand, 42982248 - 42982211
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaat 120  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  42982248 ctctttcttccccaaatatataaatttggaaccctaat 42982211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 20494146 - 20494182
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaa 119  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  20494146 ctctttcttccccaaatatataaatttggaaccctaa 20494182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 112; Significance: 2e-56; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 86 - 386
Target Start/End: Original strand, 17950853 - 17951152
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||| |||||| |||||||||  ||| ||||||    
T  17950853 tttcttccccaaatatataaaattggaaccctaattttacaatgtgtaatctacactccaaaatctccaaattttcttccaataattaagggtcacgttc 17950952  T
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatct 285  Q
    |||||||| |||||||  | |||||||||||        |||||||| ||||  |||||||  |||||||  ||||||||||| |||| || ||||||||    
T  17950953 ttccccaaatcaaaaaattacaaaccctaat-ttttttaattgaatctgaaaaccaaaatctgcaaaattcattcaagcaaaactgttgaaattgaatct 17951051  T
Q  286 gaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgtt 385  Q
     |||||||| | |||||   |  ||||||||  |  ||| |||||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||||    
T  17951052 aaaatgatgggaggtggtcatttgggcaaaaagagctatcaaagtcaagcttcatcttcatcctccatgtttaatggtgatgtgagagtgcttgaatgtt 17951151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 86 - 386
Target Start/End: Original strand, 35174674 - 35174974
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||| |||||| |||||||||  ||| ||||||    
T  35174674 tttcttccccaaatatataaaattggaaccctaattttacaatgtgtaatctacactccaaaatctccaaattttcttccaataattaagggtcacgttc 35174773  T
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatct 285  Q
    |||||||| |||||||  | |||||||||||        |||||||| ||||  |||||||  |||||||  ||||||||||| |||| || ||||||||    
T  35174774 ttccccaaatcaaaaaattgcaaaccctaattttttttaattgaatctgaaaaccaaaatctgcaaaattcattcaagcaaaactgttgaaattgaatct 35174873  T
Q  286 gaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgtt 385  Q
     |||| ||| | ||||    || ||||||||  |  ||| |||||||||||| ||||| |  ||||||||||||||||||| ||||||||| ||||||||    
T  35174874 aaaataatgggaggtgatcatatgggcaaaaagagctatcaaagtcaagcttcatcttcatcctccatgtttaatggtgatatgagagtgcctgaatgtt 35174973  T
Q  386 g 386  Q
    |    
T  35174974 g 35174974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 84 - 380
Target Start/End: Complemental strand, 17936339 - 17936042
Alignment:
Q  84 tctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgt 183  Q
    |||||||||||||||| |||||||||| |||||||||||| |||| | ||||||||| |||||||||||||||||||||| || |||||| ||  |||||    
T  17936339 tctttcttcctcaaatctataaaattgaaaccctaatttttcaatctctaatctacaatccaaaattcccaaaatttcttccattaattaatgacaacgt 17936240  T
Q  184 tcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaat 283  Q
    | || || | ||| |||| ||||||||||||||        |||||||| ||||| ||||||| ||||||    ||||||||||||||||||  ||||||    
T  17936239 tattgcctacttctaaaaacttcaaaccctaatttgttttgattgaatctgaaatccaaaatccccaaaaaaaattcaagcaaaattgttcagattgaat 17936140  T
Q  284 ctgaaatgatgaggggtgggtgtaagggc-aaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttga 380  Q
    | ||||||||| | |||||  ||| |||| |||| || || | |||||| ||||| ||||| ||  |  ||||||||||||||||| ||| |||||||    
T  17936139 ccgaaatgatgggtggtggacgtatgggcaaaaaacagttctcaaagtcgagcttcatcttcaaaatttatgtttaatggtgatgtcagaatgcttga 17936042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 86 - 386
Target Start/End: Complemental strand, 34345123 - 34344824
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    ||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||   |||| |||||| |||||||||  ||| ||||||    
T  34345123 tttcttcctaaaatatataaaattggaaccctaactttacaatgtgtaatctacactccaaaatcttcaaattttcttccaataattaagggtcacgttc 34345024  T
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatct 285  Q
    |||||| | | |||||  | |||||||||||        |||| ||  ||||  |||||||  |||||||  || |||||||| |||| || ||||||||    
T  34345023 ttccccgaataaaaaaattgcaaaccctaattttttttaattggatatgaaaaccaaaatctgcaaaattcatttaagcaaaagtgttgaaattgaatct 34344924  T
Q  286 gaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgtt 385  Q
     |||||||  |||||||   || ||||||||  |  ||| |||||||||||| | ||| |  ||||||||||||||||||||||||||||||||||||||    
T  34344923 aaaatgat-tggggtggtcatatgggcaaaaagagctatcaaagtcaagcttcaacttcatcctccatgtttaatggtgatgtgagagtgcttgaatgtt 34344825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 86 - 214
Target Start/End: Original strand, 4289710 - 4289838
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| ||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||  ||||| |||||| |||||||||  ||| ||||||    
T  4289710 tttcttccccaaatatataaaattggaatcctaattttacaatgtgtaatctatactccaaaatctccaaattttcttccaataattaagggtcacgttc 4289809  T
Q  186 ttccccaattcaaaaagcttcaaacccta 214  Q
    |||||||| |||||||  | |||||||||    
T  4289810 ttccccaaatcaaaaaattgcaaacccta 4289838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 35 - 208
Target Start/End: Complemental strand, 31210313 - 31210129
Alignment:
Q  35 accaaaatttccaaggatcaaattaattgatttgtagaaaatgctttgctctttcttcctcaaa---tatat--------aaaattggaaccctaatttt 123  Q
    |||||||||| ||||||  ||||| ||||||||||||||||||||||||||||||| ||||||    ||| |        || |||| || |||||||||    
T  31210313 accaaaattttcaaggactaaattgattgatttgtagaaaatgctttgctctttctccctcaacggttatttcttccccaaatattgaaaacctaatttt 31210214  T
Q  124 acaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttcttccccaattcaaaaagcttcaa 208  Q
    ||||| ||||||||||||||||||||  | ||||| |  | ||||||||||||||||| ||||||||||||||||||| ||||||    
T  31210213 acaatctgtaatctacactccaaaatctcaaaaatattatccaataattagtggtaactttcttccccaattcaaaaaacttcaa 31210129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 33277101 - 33277234
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    ||||||||||| ||||||||||||| |||||||||| |||||| ||| ||| | ||| | | |||||| ||||||||||||| ||  ||||  |  |||     
T  33277101 gctctttcttc-tcaaatatataaatttggaaccctgattttataatttgtcacctagagttcaaaatccccaaaatttcttccatgaattgatattaaa 33277199  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||||||||| ||| ||||||||||    
T  33277200 gttcttccccaattcaaaaaacttaaaaccctaat 33277234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 7371453 - 7371586
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||| |||||||||||| ||||||||||||| ||| ||| ||| | ||| | | |||||| ||| ||||||||| ||  ||||  ||  || |    
T  7371453 ctctttcttccccaaatatataaatttggaaccctaatgttataatttgtcacctagagttcaaaatcccccaaatttcttccatgaattgatgtcaatg 7371552  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    ||||||||||||||||||| ||| ||||||||||    
T  7371553 ttcttccccaattcaaaaaacttaaaaccctaat 7371586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 84 - 208
Target Start/End: Original strand, 30639903 - 30640027
Alignment:
Q  84 tctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgt 183  Q
    ||||||||||| || | ||||||||||||||| |||||  ||||| || ||||||||||| |||||  || ||||||| | ||||||| ||||||   ||    
T  30639903 tctttcttccttaattgtataaaattggaaccataattacacaatctgcaatctacactctaaaatcacctaaatttcctccaataataagtggtccagt 30640002  T
Q  184 tcttccccaattcaaaaagcttcaa 208  Q
    ||||||  |||||||||| ||||||    
T  30640003 tcttccataattcaaaaaacttcaa 30640027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 201
Target Start/End: Complemental strand, 11356922 - 11356803
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| |||||||||||| ||||||||||||| ||| ||| ||| | ||| | | ||||||  || ||||||||| ||  ||||  ||  ||     
T  11356922 gctctttcttccccaaatatataaatttggaaccctaatgttataatttgttacctagagttcaaaatctcccaaatttcttccatgaattgatgtcaat 11356823  T
Q  182 gttcttccccaattcaaaaa 201  Q
    ||||||||||||||||||||    
T  11356822 gttcttccccaattcaaaaa 11356803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 33267342 - 33267419
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctt 163  Q
    |||||||| |||||||| ||| ||||||||||||| ||| ||| ||| | ||| | | |||||| |||||||||||||    
T  33267342 tttcttccccaaatatacaaatttggaaccctaatgttataatttgtcacctagagttcaaaatccccaaaatttctt 33267419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 14337985 - 14338061
Alignment:
Q  96 aaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataatt 172  Q
    ||||||||||| ||||||||||||||||| ||| ||| |  || | | |||||| ||||||||||||| || |||||    
T  14337985 aaatatataaatttggaaccctaattttataatttgtcacatagagttcaaaatccccaaaatttcttccattaatt 14338061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 9e-49; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 82 - 216
Target Start/End: Complemental strand, 1344612 - 1344478
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||| | ||||||||||||||||||  |||||||||||| |||||||| ||||||||    
T  1344612 gctctttcttccctaaatatataaaattggaaccctaattttacaatctttaatctacactccaaaatctccaaaatttcttccaataattggtggtaac 1344513  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||||||||| ||||||||||||||    
T  1344512 gttcttccccaattcaaaaaacttcaaaccctaat 1344478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 86 - 386
Target Start/End: Original strand, 42619581 - 42619875
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| ||||| |||||||||||||||||||||||||||| | ||||||||||||||||||  ||||| |||||| |||||||||  ||| ||||||    
T  42619581 tttcttccccaaatgtataaaattggaaccctaattttacaatgtttaatctacactccaaaatctccaaattttcttccaataattaagggtcacgttc 42619680  T
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatct 285  Q
    |||||||| |||||||  | |||||||||||        |||||||| ||||  |||||||  |||||||  ||||||||||| |||| || ||||||||    
T  42619681 ttccccaaatcaaaaaattgcaaaccctaattttttttaattgaatctgaaaaccaaaatctgcaaaattcattcaagcaaaactgttgaaattgaatct 42619780  T
Q  286 gaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgtt 385  Q
     |||||||| |||||||   || |||    |||   ||  |||||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||||    
T  42619781 aaaatgatggggggtggtcatatggg---gagc---taccaaagtcaagcttcatcttcatcctccatgtttaatggtgatgtgagagtgcttgaatgtt 42619874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 9 - 211
Target Start/End: Complemental strand, 24497969 - 24497749
Alignment:
Q  9 agcagagactaatgtggtcgacagtgaccaaaatttccaaggatcaaattaattgatttgtagaaaatgctttgctctttcttcctc------------- 95  Q
    ||||||||||||| ||| ||| ||||| |||||||| |||||| |||||| ||||||||| | |||||| ||||||||||||||| |                 
T  24497969 agcagagactaatttggccgatagtgatcaaaatttacaaggaccaaattgattgatttgcataaaatgttttgctctttcttccccaatggctatttct 24497870  T
Q  96 -----aaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttcttccc 190  Q
         ||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| | || |||||||||||||    
T  24497869 tccctaaatatataaaattgaaactctaattttacaataagtaatctacactccaaaattcccaaaatttcttccaataatcaatgataacgttcttccc 24497770  T
Q  191 caattcaaaaagcttcaaacc 211  Q
    ||||||||||| |||||||||    
T  24497769 caattcaaaaaccttcaaacc 24497749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 82 - 392
Target Start/End: Original strand, 18726853 - 18727164
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| ||| | |||||||||||||||||||||  ||||| |||||||||||||| | |||    |||||||  | ||||||| ||||||       
T  18726853 gctctttcttccccaattgtataaaattggaaccctaattacacaatctgtaatctacactctataatcatgaaaattttctccaataataagtggttca 18726952  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnn-attgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttg 280  Q
    ||||| |||||||||||||| ||||||||||||||         | ||||||  |||  |||||||  ||||||||||| |||||| | | || || |||    
T  18726953 gttctgccccaattcaaaaaacttcaaaccctaatttttttcgtagtgaatctcaaagccaaaatcctcaaaatttcttgaagcaagactattgaaattg 18727052  T
Q  281 aatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttga 380  Q
    |||||||||||||| ||||||||  ||  || |||| |  |||||||||| |||||| ||||| |||||||| ||||||||||| |||||||||||||||    
T  18727053 aatctgaaatgatgtggggtgggaatataggaaaaaacggttatgaaagtaaagcttcatcttcaagctccaagtttaatggtgttgtgagagtgcttga 18727152  T
Q  381 atgttgatgtcc 392  Q
    |||||| |||||    
T  18727153 atgttggtgtcc 18727164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 82 - 384
Target Start/End: Original strand, 38176923 - 38177225
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| ||| | ||||| |||||||||||||||  |||||    ||| ||||||| |||||| ||||||| || | |||| || | ||||       
T  38176923 gctctttcttccccaattgtataacattggaaccctaattacacaatcaacaatttacactctaaaattaccaaaatatcctccaattataaatggtcca 38177022  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 281  Q
    |||||||||||||||||||| ||||||||||||||        |||||||  ||||  |||||||  ||||||||||| |||||||| | || || ||||    
T  38177023 gttcttccccaattcaaaaaacttcaaaccctaattttttcgtattgaatttgaaagccaaaatcctcaaaatttcttgaagcaaaactattgaaattga 38177122  T
Q  282 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaa 381  Q
    ||||||||||||| |||||||   || ||| ||||  | ||||||||||| ||||| |||||  ||||||| ||||||||||| ||||||||||||||||    
T  38177123 atctgaaatgatggggggtggaaatatgggaaaaaatagttatgaaagtcgagcttcatcttcgagctccaagtttaatggtgttgtgagagtgcttgaa 38177222  T
Q  382 tgt 384  Q
    |||    
T  38177223 tgt 38177225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 82 - 384
Target Start/End: Original strand, 38204147 - 38204449
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| ||| | ||||| |||||||||||||||  |||||    ||| ||||||| |||||| ||||||| || | |||| || | ||||       
T  38204147 gctctttcttccccaattgtataacattggaaccctaattacacaatcaacaatttacactctaaaattaccaaaatatcctccaattataaatggtcca 38204246  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttga 281  Q
    |||||||||||||||||||| ||||||||||||||        |||||||  ||||  |||||||  ||||||||||| |||||||| | || || ||||    
T  38204247 gttcttccccaattcaaaaaacttcaaaccctaattttttcgtattgaatttgaaagccaaaatcctcaaaatttcttgaagcaaaactattgaaattga 38204346  T
Q  282 atctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaa 381  Q
    ||||||||||||| |||||||   || ||| ||||  | ||||||||||| ||||| |||||  ||||||| ||||||||||| ||||||||||||||||    
T  38204347 atctgaaatgatggggggtggaaatatgggaaaaaatagttatgaaagtcgagcttcatcttcgagctccaagtttaatggtgttgtgagagtgcttgaa 38204446  T
Q  382 tgt 384  Q
    |||    
T  38204447 tgt 38204449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 86 - 392
Target Start/End: Original strand, 35291343 - 35291644
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||||| ||| | |||||||||| |||||| |||  ||||   | |||||||||||||||||  |||||||||| | || |||| ||||||   ||||    
T  35291343 tttcttccccaattgtataaaattgaaaccctgattacacaa---gcaatctacactccaaaatcaccaaaatttcctccagtaataagtggtccggttc 35291439  T
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatct 285  Q
    |||||||||||| ||| |||||||||||||         |||||||  |||  ||||||||  ||||||||||| |||||||| | || || ||| ||||    
T  35291440 ttccccaattcacaaaacttcaaaccctaac-tttttgcattgaatttgaatgtcaaaatcctcaaaatttcttgaagcaaaactattgaaattggatct 35291538  T
Q  286 gaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgtt 385  Q
    ||||||||| ||||||||  || ||| |||| || |||||||||||||| || ||||| |||||||| ||||||||||||||||| ||||||||||||||    
T  35291539 gaaatgatg-ggggtgggaatatgggaaaaaacagttatgaaagtcaagtttcatcttcaagctccaagtttaatggtgatgtgatagtgcttgaatgtt 35291637  T
Q  386 gatgtcc 392  Q
    | |||||    
T  35291638 ggtgtcc 35291644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 101 - 392
Target Start/End: Complemental strand, 40330296 - 40330004
Alignment:
Q  101 tataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttcttccccaattcaaaa 200  Q
    |||||||||||||||||||||  |||||||| |||||||||||||||||  | |||||||| | ||||||| ||||||   | ||||||||||||||| |    
T  40330296 tataaaattggaaccctaattacacaatatgcaatctacactccaaaatcacaaaaatttcctccaataataagtggtccagctcttccccaattcaaca 40330197  T
Q  201 agcttcaaaccctaatannnnnnn-attgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgagggg 299  Q
    | ||| ||||||||||         |||||||  ||||  |||||||   |||||||||| |||||||| | || || |||| |||||||||||| ||||    
T  40330196 aacttgaaaccctaattttttccgtattgaatatgaaagccaaaatcttgaaaatttcttgaagcaaaactattgaaattgattctgaaatgatgggggg 40330097  T
Q  300 tgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 392  Q
    |||   || ||| ||||  | ||||||||||| ||||| ||||| ||  |||| ||||||||||||||||||||||||||||||||| |||||    
T  40330096 tggaaatatgggaaaaaatagttatgaaagtcgagcttcatcttcaatttccaagtttaatggtgatgtgagagtgcttgaatgttggtgtcc 40330004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 82 - 392
Target Start/End: Complemental strand, 32089725 - 32089411
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| ||| | |||||||||||||||||||||  ||||| || ||||||||||| | |||    |||||||  | ||||||| || |||       
T  32089725 gctctttcttccccaattgtataaaattggaaccctaattacacaatctgcaatctacactctataatcatgaaaatttactccaataataagaggttca 32089626  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaatannnnnnn-attgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttg 280  Q
    ||||| |||||||||||||| ||||||||||||||         | |||||| ||||  |||||||  ||||||||||| |||||||| | || || |||    
T  32089625 gttctgccccaattcaaaaaacttcaaaccctaatttttttcgtagtgaatctgaaagccaaaatcctcaaaatttcttgaagcaaaactattgaaattg 32089526  T
Q  281 aat-ctg--aaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgct 377  Q
    ||| ||   |||||||| ||||||||  || ||| |||| |  ||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||    
T  32089525 aatacttcaaaatgatgtggggtgggaatatgggaaaaaacggttatgaaagtcaagcttcatcttcaagctccaagtttaatggtgttgtgagagtgct 32089426  T
Q  378 tgaatgttgatgtcc 392  Q
    ||||||||| |||||    
T  32089425 tgaatgttggtgtcc 32089411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 84 - 216
Target Start/End: Original strand, 1343482 - 1343614
Alignment:
Q  84 tctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgt 183  Q
    ||||||||||  |||||||||||||||  |||||||||||| ||| | ||| ||||||||||||||  |||||||||||| ||||| |||||||||||||    
T  1343482 tctttcttccctaaatatataaaattgacaccctaattttataatctttaaactacactccaaaatctccaaaatttcttccaatagttagtggtaacgt 1343581  T
Q  184 tcttccccaattcaaaaagcttcaaaccctaat 216  Q
    | |||||||||| ||||| || |||||||||||    
T  1343582 ttttccccaatttaaaaaactccaaaccctaat 1343614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 86 - 316
Target Start/End: Complemental strand, 27350322 - 27350095
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttc 185  Q
    |||||| | ||||| |||||||||||||||||||||||| ||| | ||||  |||| ||||||||||||||| ||||||||||||||||| |||||||||    
T  27350322 tttctttcccaaatgtataaaattggaaccctaattttataatctttaattcacacgccaaaattcccaaaaattctttcaataattagt-gtaacgttc 27350224  T
Q  186 ttccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaat-tcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatc 284  Q
     ||||||||| ||| | | |||||||||| |        ||||||||| ||||   |||||| ||||||||||||||| ||||| ||||  | ||||||     
T  27350223 atccccaattgaaataacctcaaaccctatt--ttttttattgaatccaaaataaaaaaatccccaaaatttcttcaaacaaaactgttgtaattgaata 27350126  T
Q  285 tgaaatgatgaggggtgggtgtaagggcaaaa 316  Q
     ||||||||| |||||||||||| ||||||||    
T  27350125 agaaatgatg-ggggtgggtgtatgggcaaaa 27350095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 239 - 392
Target Start/End: Original strand, 43317176 - 43317329
Alignment:
Q  239 tcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagcttt 338  Q
    ||||||||  ||||||||||| |||||||| |  | || ||| ||||||||||||| ||||||||  || ||  |||| || ||||||||||| |||||     
T  43317176 tcaaaatcctcaaaatttcttgaagcaaaactagtgaaattggatctgaaatgatggggggtgggaatatggaaaaaaacagttatgaaagtcgagcttc 43317275  T
Q  339 atctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 392  Q
    ||||| || ||||| ||||||||||||||||||||||||||||||||| |||||    
T  43317276 atcttcaaactccaagtttaatggtgatgtgagagtgcttgaatgttggtgtcc 43317329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 101 - 386
Target Start/End: Original strand, 32836186 - 32836470
Alignment:
Q  101 tataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttcttccccaattcaaaa 200  Q
    ||||| |||||||||||||||  ||||| || ||| ||||||  |||||  ||||||| || | |||  || | |||| | |||||||||||||||||||    
T  32836186 tataacattggaaccctaattacacaatctgcaatttacactataaaatcaccaaaatatcctccaaatataaatggtcaagttcttccccaattcaaaa 32836285  T
Q  201 agcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggt 300  Q
    | ||||||||||||||        |||||||   |||  |||||||  |||||  | || |||||||| | || || ||||||||||||||||| |||||    
T  32836286 aacttcaaaccctaattttttcgtattgaatttaaaagccaaaatcctcaaaaaattttgaagcaaaactattgaaattgaatctgaaatgatg-ggggt 32836384  T
Q  301 gggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttg 386  Q
    |||  || | | |||| || ||||||||||| ||||| |||||  ||||||| ||||||||||| |||||||||||||||||||||    
T  32836385 gggaatatgtgaaaaaacagttatgaaagtcgagcttcatcttcgagctccaagtttaatggtgttgtgagagtgcttgaatgttg 32836470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 82 - 316
Target Start/End: Complemental strand, 6116700 - 6116465
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| ||||| |||||||||| |||||||||||| |||| | ||||||||| || ||||| ||||||||||||| || ||||||     |||    
T  6116700 gctctttcttccccaaatctataaaattgaaaccctaatttttcaatctctaatctacagtcaaaaatccccaaaatttcttccattaatta---acaac 6116604  T
Q  182 --gttcttccccaattcaaaaagcttcaaaccctaa--tannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaat 277  Q
       ||||||||  |||| |||| |||||||||||||  |        |||||||  ||||| ||||||| ||||||||||||||  |||||||||||||     
T  6116603 catttcttccctgattctaaaaacttcaaaccctaatttttgttttgattgaatatgaaatccaaaatccccaaaatttcttcattcaaaattgttcaaa 6116504  T
Q  278 ttgaatctgaaatgatgaggggtgggtgtaagggcaaaa 316  Q
    ||||||| ||||||||| | | ||||||||  |||||||    
T  6116503 ttgaatccgaaatgatgggtgatgggtgtataggcaaaa 6116465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 240 - 392
Target Start/End: Complemental strand, 18341745 - 18341593
Alignment:
Q  240 caaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggtgggtgtaagggcaaaagcaattatgaaagtcaagcttta 339  Q
    ||||||| ||||||||||||||| ||||||||||||  ||||||||||||||||| | |||||  ||| |||||||| || || | ||| |  ||||| |    
T  18341745 caaaatccccaaaatttcttcaatcaaaattgttcagattgaatctgaaatgatgggtggtggtcgtatgggcaaaaacagttctcaaacttgagcttca 18341646  T
Q  340 tctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 392  Q
    || | || ||| |||||||| |||||||| ||| ||||||||||||| |||||    
T  18341645 tcctcaaactctatgtttaacggtgatgtaagaatgcttgaatgttggtgtcc 18341593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 18623765 - 18623899
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| |||||||||||| ||||||||||||| ||| |||  || | ||| | | |||||| ||||||||||||| ||  ||||  ||  ||     
T  18623765 gctctttcttccccaaatatataaatttggaaccctaatgttataattcgtcacctagagttcaaaatccccaaaatttcttacatgaattgatgccaaa 18623864  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||||||||| ||| ||||||||||    
T  18623865 gttcttccccaattcaaaaaacttaaaaccctaat 18623899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 32134556 - 32134690
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||  |||||||||||| ||||||||||||| ||| ||| ||| | ||| | | |||||| ||| ||||||||| ||  ||||  ||  ||     
T  32134556 gctctttcttctacaaatatataaatttggaaccctaatgttataatttgtcacctatagttcaaaatcccccaaatttcttccatgaattgatgtcaat 32134655  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||||||||| ||| ||||||||||    
T  32134656 gttcttccccaattcaaaaaacttaaaaccctaat 32134690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 364
Target Start/End: Complemental strand, 35400489 - 35400226
Alignment:
Q  101 tataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttcttccccaattcaaaa 200  Q
    |||||||||||||||||||||  |||||||| ||||||||||| | ||||   |||||||| | ||||||| ||||||    ||||  ||||||| ||||    
T  35400489 tataaaattggaaccctaattacacaatatgcaatctacactctataattatgaaaatttcctccaataataagtggtccaattctgtcccaatttaaaa 35400390  T
Q  201 agcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctgaaatgatgaggggt 300  Q
    | |||||||||  | |        | ||| || ||||  |||||||  ||||||||||| |||||||| | || || ||||||||||||||||| |||||    
T  35400389 aacttcaaacctaatttttttcgtagtgagtctgaaagccaaaatcctcaaaatttcttgaagcaaaactattgaaattgaatctgaaatgatggggggt 35400290  T
Q  301 gggtgtaagggcaaaagcaattatgaaagtcaagctttatctttaagctccatgtttaatggtg 364  Q
    |||  || ||| ||||    || ||||||||||| || ||||| || ||||| |||||||||||    
T  35400289 gggaatatgggaaaaaaaggttttgaaagtcaagtttcatcttcaaactccaagtttaatggtg 35400226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 34328600 - 34328466
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaat-tcccaaaatttctttcaataattagtggtaac 181  Q
    ||||||||||| |||||||||||| ||||||||||||| ||| ||| |||   ||| | | ||||||  ||||||||||||| ||  ||||  ||  ||     
T  34328600 ctctttcttccccaaatatataaatttggaaccctaatattataatttgtcgcctagagttcaaaatcccccaaaatttcttccatgaattgatgtcaat 34328501  T
Q  182 gttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||||||||||||||||||| ||| ||||||||||    
T  34328500 gttcttccccaattcaaaaaacttaaaaccctaat 34328466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 12738470 - 12738337
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    |||||||||||  ||| ||||||| ||||||||||||| ||| ||| ||| | ||| | | |||||| ||| ||||||||| ||  ||||  ||  || |    
T  12738470 ctctttcttccctaaacatataaatttggaaccctaatgttataatttgttacctagagttcaaaatcccccaaatttcttacatgaattgatgtcaatg 12738371  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    ||||||||||||||||||| ||| ||||||||||    
T  12738370 ttcttccccaattcaaaaaacttaaaaccctaat 12738337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 12801293 - 12801160
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    |||||||||||  ||| ||||||| ||||||||||||| ||| ||| ||| | ||| | | |||||| ||| ||||||||| ||  ||||  ||  || |    
T  12801293 ctctttcttccctaaacatataaatttggaaccctaatgttataatttgttacctagagttcaaaatcccccaaatttcttacatgaattgatgtcaatg 12801194  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    ||||||||||||||||||| ||| ||||||||||    
T  12801193 ttcttccccaattcaaaaaacttaaaaccctaat 12801160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 27077256 - 27077123
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||| |||||  |||| |||||||||||||||||| ||| ||| |   | | | ||||||  | |||||||||| || |||||  ||  ||||    
T  27077256 ctctttcttccccaaatccataacattggaaccctaattttataatttgtcactgagagttcaaaatctctaaaatttcttccattaattgatgacaacg 27077157  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    ||||||||||||||||||| ||||||| ||||||    
T  27077156 ttcttccccaattcaaaaaacttcaaaacctaat 27077123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 33257559 - 33257426
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||| ||| | |||||||||| |||||| |||  ||||| || ||| ||||||| | |||    |||||||| | ||||||| ||||||   |    
T  33257559 ctctttcttccccaattgtataaaattgtaaccctgattacacaatctgcaatatacactctataatcatgaaaatttcctccaataataagtggttcag 33257460  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    |||| |||||||||||||| ||||||||||||||    
T  33257459 ttctgccccaattcaaaaaacttcaaaccctaat 33257426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 392
Target Start/End: Complemental strand, 33257309 - 33257262
Alignment:
Q  345 aagctccatgtttaatggtgatgtgagagtgcttgaatgttgatgtcc 392  Q
    |||||||| ||||||||||| ||||||||||||||||||||| |||||    
T  33257309 aagctccaagtttaatggtgttgtgagagtgcttgaatgttggtgtcc 33257262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 213
Target Start/End: Original strand, 41494167 - 41494285
Alignment:
Q  95 caaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttcttccccaat 194  Q
    |||||||||||| ||||||||| ||| ||| ||| ||| | ||| | | |||||| ||||||||||||| ||  ||||  ||  || |||||||||||||    
T  41494167 caaatatataaatttggaacccgaatgttataatttgtcacctagagttcaaaatccccaaaatttcttccatgaattgatgacaaagttcttccccaat 41494266  T
Q  195 tcaaaaagcttcaaaccct 213  Q
    ||||||| ||| |||||||    
T  41494267 tcaaaaaacttaaaaccct 41494285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 30464263 - 30464344
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctt 163  Q
    |||||||||||| |||||||||||| ||||||||||||| ||| ||| ||| | ||| | | |||||| ||| |||||||||    
T  30464263 gctctttcttccccaaatatataaatttggaaccctaatgttataatttgttacctagagttcaaaatcccccaaatttctt 30464344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 28035772 - 28035852
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctt 163  Q
    |||||||||||||| ||||||||||||| |||| ||| ||| |||| | |||| |||| |  |||||| ||||||||||||    
T  28035772 ctctttcttcctcagatatataaaattgaaaccttaacttttcaatctctaatttacagtttaaaatttccaaaatttctt 28035852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 386
Target Start/End: Complemental strand, 27077010 - 27076963
Alignment:
Q  339 atctttaagctccatgtttaatggtgatgtgagagtgcttgaatgttg 386  Q
    ||||| |||||| || |||||||||||||||||||| |||||||||||    
T  27077010 atcttcaagctctatttttaatggtgatgtgagagtacttgaatgttg 27076963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 28821860 - 28821770
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataatt 172  Q
    |||||||||||| |||||||||||| ||| ||||||||| ||| ||| ||| | ||| | | |||||| ||| ||||||||| || |||||    
T  28821860 gctctttcttccccaaatatataaatttgaaaccctaatgttataatttgtcacctagagttcaaaatcccccaaatttcttccattaatt 28821770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 120
Target Start/End: Original strand, 29620495 - 29620529
Alignment:
Q  86 tttcttcctcaaatatataaaattggaaccctaat 120  Q
    ||||||||||||||||||||| |||||||||||||    
T  29620495 tttcttcctcaaatatataaatttggaaccctaat 29620529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 8541072 - 8541036
Alignment:
Q  84 tctttcttcctcaaatatataaaattggaaccctaat 120  Q
    |||||||||| |||||||||||| |||||||||||||    
T  8541072 tctttcttccccaaatatataaatttggaaccctaat 8541036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 163
Target Start/End: Complemental strand, 19998229 - 19998149
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctt 163  Q
    ||||||||||| ||||| |||||||| | ||||||||||||| ||| ||| | ||| | |  ||||||| |||||||||||    
T  19998229 ctctttcttccccaaatctataaaatggaaaccctaattttataatttgtcacctagagtttaaaattctcaaaatttctt 19998149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 88 - 316
Target Start/End: Complemental strand, 38082 - 37856
Alignment:
Q  88 tcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacgttctt 187  Q
    |||||| ||||| ||||||||||||||||||||||||||||   ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  38082 tcttccccaaatgtataaaattggaaccctaattttacaatcattaatccacactccaaaattcccaaaaattcttccaataattagtggtaacgttctt 37983  T
Q  188 ccccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaat-tcaaaatcaccaaaatttcttcaagcaaaattgttcaatttgaatctg 286  Q
    |||||||| ||| | | ||||||||||||        ||||||||||||||   |||||| |||||||| |||||| ||||| ||||  | |||||||||    
T  37982 ccccaattgaaataacctcaaaccctaat--tttttgattgaatccgaaatcaaaaaatccccaaaattccttcaaacaaaactgttgtaattgaatctg 37885  T
Q  287 aaatgatgaggggtgggtgtaagggcaaaa 316  Q
    ||||||||| ||||||||||| ||||||||    
T  37884 aaatgatga-gggtgggtgtatgggcaaaa 37856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 82 - 303
Target Start/End: Original strand, 57669 - 57890
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| |||||||||||||||| |||||| ||| ||| || ||||||||||||||||||||  ||||||||||||  |||||| |||||||||    
T  57669 gctctttcttccccaaatatataaaattgaaaccctgattatactatctgtaatctacactccaaaataaccaaaatttcttcgaataataagtggtaac 57768  T
Q  182 gttcttcc-ccaattcaaaaagcttcaaaccctaatannnnnnnattgaatccgaaattcaaaatcaccaaaatttcttcaagcaaaattgttcaatttg 280  Q
     ||||||| | |||||||||| ||||||||||| ||        |||||||| ||||| |||||||   ||||||||||  ||||||| | || || |||    
T  57769 attcttcctctaattcaaaaaacttcaaaccct-atttttttttattgaatctgaaatccaaaatccaaaaaatttctttcagcaaaactattgaaattg 57867  T
Q  281 aatctgaaatgatgaggggtggg 303  Q
    |||| ||||| ||||||||||||    
T  57868 aatccgaaatcatgaggggtggg 57890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1041 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold1041
Description:

Target: scaffold1041; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 2710 - 2643
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaat 149  Q
    |||||||||||| ||||||||||||| |||||| |||||| ||| |||||||||||||||||||||||    
T  2710 gctctttcttccccaaatatataaaactggaactctaattatactatatgtaatctacactccaaaat 2643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1041; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 2356 - 2423
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaat 149  Q
    |||||||||||| ||||||||||||||||||||||| ||| ||| ||  |||||||||||||||||||    
T  2356 gctctttcttccccaaatatataaaattggaaccctcattatactatcagtaatctacactccaaaat 2423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0722 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 211
Target Start/End: Original strand, 4446 - 4574
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||| ||||||| |||||||||||||| ||||||||||||| ||| ||||| | |  |||||  |||||| ||||| || |||||  ||  |||    
T  4446 gctctttctttctcaaatctataaaattggaactctaattttacaatttgtcatctagagtttaaaatctccaaaa-ttcttccattaattgatgacaac 4544  T
Q  182 gttcttccccaattcaaaaagcttcaaacc 211  Q
    |||||||| |||| | |||| |||||||||    
T  4545 gttcttcctcaatgctaaaaacttcaaacc 4574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 9666 - 9533
Alignment:
Q  83 ctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaacg 182  Q
    ||||||||||| |||||||||||| ||| ||||||||| ||| ||| ||| | ||| | | |||||| ||| ||||||||| ||  ||||  ||  || |    
T  9666 ctctttcttccccaaatatataaatttgaaaccctaatgttataatttgtcacctagagttcaaaatcccccaaatttcttccatgaattgatgtcaatg 9567  T
Q  183 ttcttccccaattcaaaaagcttcaaaccctaat 216  Q
    || |||||||||||||||| ||| ||||||||||    
T  9566 tttttccccaattcaaaaaacttaaaaccctaat 9533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 201
Target Start/End: Complemental strand, 1283 - 1164
Alignment:
Q  82 gctctttcttcctcaaatatataaaattggaaccctaattttacaatatgtaatctacactccaaaattcccaaaatttctttcaataattagtggtaac 181  Q
    |||||||||||| |||||||||||| ||||||||||||| ||| ||| ||| | ||| | | ||||||  || ||||||||| ||  ||||  ||  ||     
T  1283 gctctttcttccccaaatatataaatttggaaccctaatgttataatttgttacctagagttcaaaatctcccaaatttcttccatgaattgatgtcaat 1184  T
Q  182 gttcttccccaattcaaaaa 201  Q
    ||||||||||||||||||||    
T  1183 gttcttccccaattcaaaaa 1164  T

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