View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9021_low_29 (Length: 349)
Name: NF9021_low_29
Description: NF9021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9021_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 27 - 333
Target Start/End: Complemental strand, 6739758 - 6739451
Alignment:
| Q |
27 |
aaaaacaaactgccaaaccagttatgctatcgccacttcaaagttcaaacaagcattaaaaccttaatctccagatataataaattaagcaacctcaatc |
126 |
Q |
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|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6739758 |
aaaaacaaactgccaaaccagttatgctattgctacttcaaagttcaaacaagcattaaaaccttaatctccaaatataataaattaagcaacctcaatc |
6739659 |
T |
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| Q |
127 |
gagccaatccaattatgatgcaatctaaccaggacacgttaatatcattttacaagcacaaacaattagatacacatgttattcaacattgtctaattag |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
6739658 |
gagccaatccaattatgatgcaatctaaccaggacacgttaatatcattttacaagcacaaacaattagatacacatgttgttcaacgttgtctaattag |
6739559 |
T |
|
| Q |
227 |
ccacaacataactcaatcaatatctctaagaaactaagctatgagaaaccatcaaacctccatc-tccgatacagttttgttggccgaaatcagtcttca |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6739558 |
ccacaacataactcaatcaatatctctaagaaactaagctatgagaaaccatcaaacctccatcgcccgatacagttttgttggccgaaatcagtcttca |
6739459 |
T |
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| Q |
326 |
ttattggt |
333 |
Q |
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|||||||| |
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| T |
6739458 |
ttattggt |
6739451 |
T |
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