View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9021_low_3 (Length: 834)
Name: NF9021_low_3
Description: NF9021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9021_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 787; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 787; E-Value: 0
Query Start/End: Original strand, 19 - 816
Target Start/End: Complemental strand, 42769510 - 42768712
Alignment:
| Q |
19 |
ttcctcctctcactttccctatgtttccttcctcacattgttttctcatctcactgcacaacagaaacttccactaaaacctttcaaaaatgcatgaatc |
118 |
Q |
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| T |
42769510 |
ttcctcctctcactttccctatgtttccttcctcacattgttttctcatctcactgcacaacagaaacttccactaaaacctttcaaaaatgcatgaatc |
42769411 |
T |
|
| Q |
119 |
ttcctacacaacaagcctcaatagcatggactttacaccctcatagctccaccttagaactaattttctttggcactttcatttcaccttctggttgggt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769410 |
ttcctacacaacaagcctcaatagcatggactttacaccctcatagctccaccttagaactaattttctttggcactttcatttcaccttctggttgggt |
42769311 |
T |
|
| Q |
219 |
tggatttggtatcaaccctacttcaccacaaatgacaggaactaatgctttgatatcatttccagacccaaatacaggacaaatagttcttctacctttc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769310 |
tggatttggtatcaaccctacttcaccacaaatgacaggaactaatgctttgatatcatttccagacccaaatacaggacaaatagttcttctacctttc |
42769211 |
T |
|
| Q |
319 |
atccttgacactactgtaaaactccaaaaatcaccacttctttctcaaccctttgataatatcaacctcctctcttcctctgcagctatgtatggtggca |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769210 |
atccttgacactactgtaaaactccaaaaatcaccacttctttctcaaccctttgataatatcaacctcctctcttcctctgcagctatgtatggtggca |
42769111 |
T |
|
| Q |
419 |
aaatggcaaccattcataacggtgcgcctattcaaatctacgctaaactcaaactcgaatcgaataaaaccaaaatccaccttgtttggaatagaggtct |
518 |
Q |
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| T |
42769110 |
aaatggcaaccattcataacggtgcgcctattcaaatctacgctaaactcaaactcgaatcgaataaaaccaaaatccaccttgtttggaatagaggtct |
42769011 |
T |
|
| Q |
519 |
ttatgttcaaggctactcaccaaccattcatccaacaacatcaattgatctatcttctattgccacttttgatgttttgtcaggttcatcatcctcatca |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769010 |
ttatgttcaaggctactcaccaaccattcatccaacaacatcaattgatctatcttctattgccacttttgatgttttgtcaggttcatcatcctcatca |
42768911 |
T |
|
| Q |
619 |
tctcaacacactgacctcacaatgttaagagtgattcatggtgtcctaaatgcaatatcttggggtatac-tttaccaacaggagcgataacagcacgtt |
717 |
Q |
| |
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| T |
42768910 |
tctcaacacactgacctcacaatgttaagagtgattcatggcgtcctaaatgcaatatcttggggtatacttttaccaacaggagcgataacagcacgtt |
42768811 |
T |
|
| Q |
718 |
atcttcgacactttcagacattaggcccttcatggttctatgctcatgcaggaatacaaatgtttggttttattcttggaaccgttgggtttggtattg |
816 |
Q |
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| T |
42768810 |
atcttcgacactttcagacattaggcccttcatggttctatgctcatgcaggaatacaaatgtttggttttattcttggaaccgttgggtttggtattg |
42768712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 200; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 40 - 808
Target Start/End: Original strand, 2452042 - 2452802
Alignment:
| Q |
40 |
tgtttccttcctcacattgttttctcatctcactgcacaacagaaacttccactaaaacctttcaaaaatgcatgaatcttcctacacaacaagcctcaa |
139 |
Q |
| |
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||||||||||||||||||| ||| |||||||||||||| |||||| || ||||||||||| |||||||| ||||||||||| || ||||||||||| | |
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| T |
2452042 |
tgtttccttcctcacattggtttttcatctcactgcactgtagaaacctctactaaaaccttccaaaaatgtatgaatcttcccacccaacaagcctcta |
2452141 |
T |
|
| Q |
140 |
tagcatggactttacaccctcatagctccaccttagaactaattttctttggcactttcatttcaccttctggttgggttggatttggtatcaaccctac |
239 |
Q |
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||||||||||||| ||||||||| |||||||||||||||| | |||||||| || ||||||||||||||||| |||||||||| || |||||||| || |
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| T |
2452142 |
tagcatggactttctaccctcataactccaccttagaactagtcttctttggaaccttcatttcaccttctggatgggttggatggggaatcaacccaac |
2452241 |
T |
|
| Q |
240 |
ttcaccacaaatgacaggaactaatgctttgatatcatttccagacccaaatacaggacaaatagttcttctacctttcatccttgacactactgtaaaa |
339 |
Q |
| |
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|||| | | |||||||||||| |||||| ||| | ||| | ||||||| | |||| |||||||| || || |||| ||| || ||| | | ||| || |
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| T |
2452242 |
ttcatcggagatgacaggaactcgtgctttaatagccttttctgacccaacttcaggccaaatagtcctacttccttacattctagacccgaatgtgaag |
2452341 |
T |
|
| Q |
340 |
ctccaaaaatcaccacttctttctcaaccctttgataatatcaacctcctctcttcctctgcagctatgtatggtggcaaaatggcaaccattcataacg |
439 |
Q |
| |
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||||||||||| || || || |||| || ||| | || ||||| |||||||| | ||||| || ||||||||||||| ||| ||||||||||| | |
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| T |
2452342 |
ctccaaaaatctccgctgctctctcggccacttg---acattcacctcatctcttccacggcagccatatatggtggcaaaagggccaccattcataatg |
2452438 |
T |
|
| Q |
440 |
gtgcgcctattcaaatctacgctaaactcaaactcgaatcgaataaaaccaaaatccaccttgtttggaatagaggtctttatgttcaaggctactcacc |
539 |
Q |
| |
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|||| || || |||||||| || ||| ||||||| ||||| || ||||||||||||||||||||||||||| |||| |||||||||||||||||||| || |
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|
| T |
2452439 |
gtgcccccatccaaatctatgccaaattcaaactagaatcaaacaaaaccaaaatccaccttgtttggaatcgaggactttatgttcaaggctactcgcc |
2452538 |
T |
|
| Q |
540 |
aaccattcatccaacaacatcaattgatctatcttctattgccacttttgatgttttgtcaggttcatcatcctcatcatctcaacacactgacctcaca |
639 |
Q |
| |
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|| ||||||||||| || || | |||||| ||||| |||||||| || || ||||||||||||||||| ||| ||||||||| ||||| ||| |
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| T |
2452539 |
tactattcatccaaccacctccactgatctctcttccattgccaccttggacgttttgtcaggttcatc-cgctc-----gtcaacacacagaccttaca |
2452632 |
T |
|
| Q |
640 |
atgttaagagtgattcatggtgtcctaaatgcaatatcttggggtatac-tttaccaacaggagcgataacagcacgttatcttcgacactttcagacat |
738 |
Q |
| |
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||| | ||||||||||| ||| | ||||| || || |||||||| | ||| || | ||||| ||||| |||||||| || | || |||| || |
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| T |
2452633 |
atgctgagagtgattcacggtactttgaatgccatctcatggggtattcttttgccgatgggagctataactgcacgttactttaggcatattcaatcac |
2452732 |
T |
|
| Q |
739 |
taggcccttcatggttctatgctcatgcaggaatacaaatgtttggttttattcttggaaccgttgggtt |
808 |
Q |
| |
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|||| ||| ||||||||||||||||||||||||||||| |||||| ||| ||||||||||| || ||||| |
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| T |
2452733 |
taggtcctgcatggttctatgctcatgcaggaatacaattgtttgctttcattcttggaactgtggggtt |
2452802 |
T |
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