View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9021_low_31 (Length: 317)
Name: NF9021_low_31
Description: NF9021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9021_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 302
Target Start/End: Original strand, 17612212 - 17612507
Alignment:
| Q |
11 |
actcctcaagatctcagttttgttggctatacatataagaattttgccgctgt---ggggaagcgtcattctgttggtaagtacttttcacataaaagca |
107 |
Q |
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| T |
17612212 |
actcctcaagatctcagttttgttggctatacatataagaattttgccgctgtcaaggggaagcgtcattctgttggtaagtacttttcacataaaagca |
17612311 |
T |
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| Q |
108 |
caatatgc-actattcttttgatggaacatattatgaatctataatgctgtgtttcaactttttatcgccaatttccattttctttttgtacatgagatc |
206 |
Q |
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| T |
17612312 |
caatatgttactattcttttgatggcacatattatgaatctataatgctgtgtttcaactttttatcgccaatttccattttctttttgtacatgagatc |
17612411 |
T |
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| Q |
207 |
agtttaatgttatttgctacggaaaatactgaaatttatgaaagatattgcacaaaaatgtcacgaatatgtcgtgatatttttaacctttactct |
302 |
Q |
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| T |
17612412 |
agtttgatgttatttgccacggtaaatactgaaatttatgatagatattgcacaaaaatgtcacgaatatgtcgtgatatttttaacctttactct |
17612507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 121 - 298
Target Start/End: Original strand, 17625237 - 17625414
Alignment:
| Q |
121 |
tcttttgatggaacatattatgaatctataatgctgtgtttcaactttttatcgccaatttccattttctttttgtacatgagatcagtttaatgttatt |
220 |
Q |
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| T |
17625237 |
tcttttgatgccacatattatgaatctataatgctgtatttcaactttttatcgccgatttccattttctttttgtacatgagatcagtttaaagttatt |
17625336 |
T |
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| Q |
221 |
tgctacggaaaatactgaaatttatgaaagatattgcacaaaaatgtcacgaatatgtcgtgatatttttaaccttta |
298 |
Q |
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| T |
17625337 |
tgccacggaaaatgctgaaatttatgaaagatattgcacaaaaatgtcacgaatatgtcgtgatatttttaaccttta |
17625414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 121 - 298
Target Start/End: Original strand, 17669625 - 17669802
Alignment:
| Q |
121 |
tcttttgatggaacatattatgaatctataatgctgtgtttcaactttttatcgccaatttccattttctttttgtacatgagatcagtttaatgttatt |
220 |
Q |
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| T |
17669625 |
tcttttgatgccacatattatgaatctataatgctgtatttcaactttttatcgccgatttccattttctttttgtacatgagatcagtttaaagttatt |
17669724 |
T |
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| Q |
221 |
tgctacggaaaatactgaaatttatgaaagatattgcacaaaaatgtcacgaatatgtcgtgatatttttaaccttta |
298 |
Q |
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| T |
17669725 |
tgccacggaaaatgctgaaatttatgaaagatattgcacaaaaatgtcacgaatatgtcgtgatatttttaaccttta |
17669802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 17625097 - 17625188
Alignment:
| Q |
15 |
ctcaagatctcagttttgttggctatacatataagaattttgccgctgt---ggggaagcgtcattctgttggtaagtacttttcacataaa |
103 |
Q |
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| T |
17625097 |
ctcaagatctcagttttgttggctatacatataggaattttgcagctgtcaaagggaagcgtcattctattggtaagtactttccgcataaa |
17625188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 17669485 - 17669576
Alignment:
| Q |
15 |
ctcaagatctcagttttgttggctatacatataagaattttgccgctgt---ggggaagcgtcattctgttggtaagtacttttcacataaa |
103 |
Q |
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| T |
17669485 |
ctcaagatctcagttttgttggctatacatataggaattttgcagctgtcaaagggaagcgtcattctattggtaagtactttccgcataaa |
17669576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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