View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9021_low_34 (Length: 303)

Name: NF9021_low_34
Description: NF9021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9021_low_34
NF9021_low_34
[»] chr8 (14 HSPs)
chr8 (35-288)||(25190229-25190482)
chr8 (35-91)||(21318466-21318522)
chr8 (91-162)||(24427390-24427462)
chr8 (91-162)||(28075925-28075997)
chr8 (95-162)||(21318553-21318621)
chr8 (161-221)||(24427730-24427792)
chr8 (35-91)||(28076024-28076080)
chr8 (91-162)||(8365813-8365885)
chr8 (35-91)||(24427308-24427363)
chr8 (46-91)||(24118278-24118323)
chr8 (181-221)||(21318928-21318968)
chr8 (91-157)||(24118184-24118251)
chr8 (91-162)||(24752566-24752638)
chr8 (225-273)||(21539938-21539985)
[»] chr7 (12 HSPs)
chr7 (161-222)||(14204732-14204793)
chr7 (35-91)||(14205089-14205145)
chr7 (221-273)||(11245810-11245862)
chr7 (221-273)||(11246255-11246307)
chr7 (91-148)||(11346814-11346872)
chr7 (91-162)||(11579498-11579570)
chr7 (91-154)||(14204998-14205062)
chr7 (91-162)||(14279408-14279480)
chr7 (173-221)||(14279757-14279805)
chr7 (95-157)||(11517947-11518010)
chr7 (48-91)||(11579597-11579640)
chr7 (49-91)||(11518041-11518083)
[»] chr3 (7 HSPs)
chr3 (161-222)||(13081363-13081424)
chr3 (91-162)||(13080708-13080780)
chr3 (35-91)||(4733600-4733656)
chr3 (91-157)||(14760782-14760848)
chr3 (35-91)||(14760875-14760931)
chr3 (38-91)||(13080629-13080682)
chr3 (91-157)||(4733683-4733751)
[»] scaffold0053 (2 HSPs)
scaffold0053 (35-91)||(709-765)
scaffold0053 (103-162)||(804-864)
[»] scaffold0049 (3 HSPs)
scaffold0049 (91-153)||(69473-69536)
scaffold0049 (35-91)||(69563-69619)
scaffold0049 (180-222)||(69126-69168)
[»] scaffold0535 (3 HSPs)
scaffold0535 (35-91)||(4089-4145)
scaffold0535 (91-162)||(4172-4244)
scaffold0535 (174-221)||(7950-7997)
[»] chr4 (6 HSPs)
chr4 (91-157)||(39045297-39045364)
chr4 (91-157)||(15411488-15411550)
chr4 (226-273)||(14283593-14283640)
chr4 (91-157)||(15452859-15452921)
chr4 (173-222)||(15411153-15411204)
chr4 (221-273)||(21324317-21324369)
[»] scaffold0160 (1 HSPs)
scaffold0160 (161-222)||(7405-7467)
[»] chr1 (7 HSPs)
chr1 (93-157)||(21218196-21218261)
chr1 (161-217)||(22105883-22105941)
chr1 (91-157)||(22106215-22106282)
chr1 (91-148)||(21092661-21092719)
chr1 (226-273)||(10216528-10216574)
chr1 (48-91)||(22106310-22106353)
chr1 (221-273)||(43517166-43517217)
[»] chr5 (2 HSPs)
chr5 (91-157)||(19615246-19615313)
chr5 (59-91)||(19615340-19615372)
[»] chr6 (4 HSPs)
chr6 (91-148)||(25925001-25925059)
chr6 (231-273)||(9340734-9340775)
chr6 (103-162)||(23575409-23575469)
chr6 (173-221)||(12477789-12477838)
[»] scaffold0231 (2 HSPs)
scaffold0231 (43-91)||(19850-19898)
scaffold0231 (120-157)||(16796-16833)
[»] chr2 (3 HSPs)
chr2 (226-277)||(22827046-22827096)
chr2 (221-273)||(29791356-29791407)
chr2 (226-273)||(19588-19634)
[»] scaffold0188 (1 HSPs)
scaffold0188 (226-273)||(12900-12946)


Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 35 - 288
Target Start/End: Original strand, 25190229 - 25190482
Alignment:
Q  35 acttttgttataacacttgcttatttgaataattgattagtgaattgctagttttgaatctaaatccttttgatttaggttaaaaaatttcacttgaatc 134  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  25190229 acttttgttttaacacttgcttatttgaataattgattagtgaattgctaattttgaatctaaatccttttgatttagcttaaaaaatttcacttgagtc 25190328  T
Q  135 aattaattgcaatatcaattcaaatatttttcaaaagcgctattcaccccctctagcttggtattcaactagccatatagaccaacaaccgtaggttttc 234  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25190329 aattaattgcaatatcaattcaattatttttcaaaagcgctattcaccccctctagcttggtattcaactagccatatataccaacaaccgtaggttttc 25190428  T
Q  235 ctcgaggttacctctagcctaggacttaggtagaactcattgaagcatgatgtc 288  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||| |||||    
T  25190429 ctcgaggttacctctagcctaggacttaggtagaactaattgaggcattatgtc 25190482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 21318466 - 21318522
Alignment:
Q  35 acttttgttataacacttgcttatttgaataattgattagtgaattgctagttttga 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21318466 acttttgttataacacttgcttatttgaataattgattagtgaattgctagttttga 21318522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 162
Target Start/End: Original strand, 24427390 - 24427462
Alignment:
Q  91 aatctaaatccttttgatttaggttaaaa-aatttcacttgaatcaattaattgcaatatcaattcaaatatt 162  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||| ||||    
T  24427390 aatctaaatccttttgatttaggttaaaacaatttcacttggatcaattaattgcaatatcgattcaattatt 24427462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 162
Target Start/End: Complemental strand, 28075997 - 28075925
Alignment:
Q  91 aatctaaatccttttgatttaggttaaaa-aatttcacttgaatcaattaattgcaatatcaattcaaatatt 162  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||    
T  28075997 aatctaaatccttttgatttaggttaaaacaatttcacttggatcaattaattgcaataccaattcaattatt 28075925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 21318553 - 21318621
Alignment:
Q  95 taaatccttttgatttaggttaaaa-aatttcacttgaatcaattaattgcaatatcaattcaaatatt 162  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||    
T  21318553 taaatccttttgatttaggttaaaacaatttcacttggatcaattaattgcaataccaattcaattatt 21318621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 24427730 - 24427792
Alignment:
Q  161 tttttcaaaagcgctattcacccc--ctctagcttggtattcaactagccatatagaccaaca 221  Q
    ||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  24427730 ttttttaaaagcgctattcaccccccctctagcttggtattcaactagccatatagaccaaca 24427792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 28076080 - 28076024
Alignment:
Q  35 acttttgttataacacttgcttatttgaataattgattagtgaattgctagttttga 91  Q
    |||||||||||  |||||| |||||||||||||||||||||||||||||||||||||    
T  28076080 acttttgttattgcacttgattatttgaataattgattagtgaattgctagttttga 28076024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 162
Target Start/End: Complemental strand, 8365885 - 8365813
Alignment:
Q  91 aatctaaatccttttgatttaggttaaaa-aatttcacttgaatcaattaattgcaatatcaattcaaatatt 162  Q
    ||||||||| | ||||||||||||||||| ||||| ||||| |||||||||||| ||||||||||||| ||||    
T  8365885 aatctaaattcatttgatttaggttaaaacaattttacttggatcaattaattgaaatatcaattcaattatt 8365813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 24427308 - 24427363
Alignment:
Q  35 acttttgttataacacttgcttatttgaataattgattagtgaattgctagttttga 91  Q
    |||||||||||| |||||  |||||||||||||||||||||||||||||||||||||    
T  24427308 acttttgttatagcactta-ttatttgaataattgattagtgaattgctagttttga 24427363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 24118323 - 24118278
Alignment:
Q  46 aacacttgcttatttgaataattgattagtgaattgctagttttga 91  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||    
T  24118323 aacacttgattatttgattaattgattagtgaattgctagttttga 24118278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 21318928 - 21318968
Alignment:
Q  181 ccccctctagcttggtattcaactagccatatagaccaaca 221  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  21318928 ccccctctagattggtattcaactagccatatagaccaaca 21318968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 24118251 - 24118184
Alignment:
Q  91 aatctaaatccttttgatttaggttaaaa-aatttcacttgaatcaattaattgcaatatcaattcaa 157  Q
    ||||||||||| |||||||||||||||||  |||| ||||| || |||||||||||| ||||||||||    
T  24118251 aatctaaatccatttgatttaggttaaaactattttacttggatgaattaattgcaaaatcaattcaa 24118184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 162
Target Start/End: Original strand, 24752566 - 24752638
Alignment:
Q  91 aatctaaatccttttgatttaggttaaaa-aatttcacttgaatcaattaattgcaatatcaattcaaatatt 162  Q
    ||||||||||| ||||||||||| ||||| ||||| ||||| ||||||||||| ||| | |||||||| ||||    
T  24752566 aatctaaatccatttgatttagggtaaaacaattttacttggatcaattaatttcaaaaccaattcaattatt 24752638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 21539938 - 21539985
Alignment:
Q  225 gtaggttttcctcgaggttacctctagcctaggacttaggtagaactca 273  Q
    |||||||| || ||||||||||| |||||||||| ||||||||||||||    
T  21539938 gtaggtttcccccgaggttacctatagcctagga-ttaggtagaactca 21539985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 14204793 - 14204732
Alignment:
Q  161 tttttcaaaagcgctattcaccccctctagcttggtattcaactagccatatagaccaacaa 222  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14204793 tttttcaaaggcgctattcaccccctctagcttggtattcaactagccatatagaccaacaa 14204732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 14205145 - 14205089
Alignment:
Q  35 acttttgttataacacttgcttatttgaataattgattagtgaattgctagttttga 91  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  14205145 acttttgttattgcacttgcttatttgaataattgattagtgaattgctagttttga 14205089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 11245810 - 11245862
Alignment:
Q  221 aaccgtaggttttcctcgaggttacctctagcctaggacttaggtagaactca 273  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  11245810 aaccgtaggttttccccgaggttacctctagcctagggcttaggtagaactca 11245862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 11246255 - 11246307
Alignment:
Q  221 aaccgtaggttttcctcgaggttacctctagcctaggacttaggtagaactca 273  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  11246255 aaccgtaggttttccccgaggttacctctagcctagggcttaggtagaactca 11246307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 11346872 - 11346814
Alignment:
Q  91 aatctaaatccttttgatttaggttaaaa-aatttcacttgaatcaattaattgcaata 148  Q
    ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||    
T  11346872 aatctaaatccatttgatttaggttaaaacaatttcacttggatcaattaattgcaata 11346814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 162
Target Start/End: Complemental strand, 11579570 - 11579498
Alignment:
Q  91 aatctaaatccttttgatttaggttaaaa-aatttcacttgaatcaattaattgcaatatcaattcaaatatt 162  Q
    ||||||||||| ||||||||||||||||| |||||  |||| ||||||||||||||||| |||||||| ||||    
T  11579570 aatctaaatccatttgatttaggttaaaacaattttccttggatcaattaattgcaataccaattcaattatt 11579498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 154
Target Start/End: Complemental strand, 14205062 - 14204998
Alignment:
Q  91 aatctaaatccttttgatttaggttaaaa-aatttcacttgaatcaattaattgcaatatcaatt 154  Q
    ||||||||| ||||||||||||||||||| |||||| |||| ||||||||||||||||| |||||    
T  14205062 aatctaaattcttttgatttaggttaaaacaatttctcttggatcaattaattgcaataccaatt 14204998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 162
Target Start/End: Original strand, 14279408 - 14279480
Alignment:
Q  91 aatctaaatccttttgatttaggttaaaa-aatttcacttgaatcaattaattgcaatatcaattcaaatatt 162  Q
    ||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||| | |||||||| ||||    
T  14279408 aatctaaatccatttgatttaggttaaaacaattttacttggatcaattaattgcaaaaccaattcaattatt 14279480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 14279757 - 14279805
Alignment:
Q  173 gctattcaccccctctagcttggtattcaactagccatatagaccaaca 221  Q
    |||||||||||||||||||||||||  || ||||||||||||| |||||    
T  14279757 gctattcaccccctctagcttggtaaccatctagccatatagagcaaca 14279805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 11518010 - 11517947
Alignment:
Q  95 taaatccttttgatttaggttaaaa-aatttcacttgaatcaattaattgcaatatcaattcaa 157  Q
    ||||||| ||||||||||||||||| ||||| ||||| ||| ||||| ||||||| ||||||||    
T  11518010 taaatccatttgatttaggttaaaacaattttacttggatcgattaaatgcaataccaattcaa 11517947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 11579640 - 11579597
Alignment:
Q  48 cacttgcttatttgaataattgattagtgaattgctagttttga 91  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||    
T  11579640 cacttgattatttgaacaattgattagtgaattgttagttttga 11579597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 91
Target Start/End: Complemental strand, 11518083 - 11518041
Alignment:
Q  49 acttgcttatttgaataattgattagtgaattgctagttttga 91  Q
    ||||| |||||||| || |||||||||||||||||||||||||    
T  11518083 acttgattatttgattatttgattagtgaattgctagttttga 11518041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 13081363 - 13081424
Alignment:
Q  161 tttttcaaaagcgctattcaccccctctagcttggtattcaactagccatatagaccaacaa 222  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  13081363 tttttcaaaagcgctattcaccccctctaccttggtattcaactagccatatagaacaacaa 13081424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 162
Target Start/End: Original strand, 13080708 - 13080780
Alignment:
Q  91 aatctaaatccttttgatttaggttaaaa-aatttcacttgaatcaattaattgcaatatcaattcaaatatt 162  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||| ||||    
T  13080708 aatctaaatccttttgatttaggttaaaacaatttcacttggatcaattaattgcaatatcgattcaattatt 13080780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 4733600 - 4733656
Alignment:
Q  35 acttttgttataacacttgcttatttgaataattgattagtgaattgctagttttga 91  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4733600 acttttgatatagcacttgcttatttgaataattgattagtgaattgctagttttga 4733656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 14760848 - 14760782
Alignment:
Q  91 aatctaaatccttttgatttaggttaaaa-aatttcacttgaatcaattaattgcaatatcaattcaa 157  Q
    |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||    
T  14760848 aatctaaatccttt-gatttaggttaaaacaatttcacttggatcaattaattgcaataccaattcaa 14760782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 14760931 - 14760875
Alignment:
Q  35 acttttgttataacacttgcttatttgaataattgattagtgaattgctagttttga 91  Q
    |||||||||||| |||||| ||||||| ||||||||||||||||||| |||||||||    
T  14760931 acttttgttatagcacttgattatttgtataattgattagtgaattgttagttttga 14760875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 13080629 - 13080682
Alignment:
Q  38 tttgttataacacttgcttatttgaataattgattagtgaattgctagttttga 91  Q
    ||||||||| |||||| |||||||||||||||||||||| ||||||| ||||||    
T  13080629 tttgttatagcacttgattatttgaataattgattagtggattgctatttttga 13080682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 4733683 - 4733751
Alignment:
Q  91 aatctaaatccttttgatttaggttaaaa-aatttca-cttgaatcaattaattgcaatatcaattcaa 157  Q
    ||||||||||||||||||||||||||||| || ||||  ||| ||||||||||||||||| ||||||||    
T  4733683 aatctaaatccttttgatttaggttaaaacaacttcatattggatcaattaattgcaataccaattcaa 4733751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 709 - 765
Alignment:
Q  35 acttttgttataacacttgcttatttgaataattgattagtgaattgctagttttga 91  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  709 acttttattataacacttgattatttgaataattgattagtgaattgctagttttga 765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 103 - 162
Target Start/End: Original strand, 804 - 864
Alignment:
Q  103 tttgatttaggttaaaa-aatttcacttgaatcaattaattgcaatatcaattcaaatatt 162  Q
    ||||||||||||||||| ||||||||||| |||||||||||||| || |||||||| ||||    
T  804 tttgatttaggttaaaacaatttcacttggatcaattaattgcagtaccaattcaattatt 864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 153
Target Start/End: Complemental strand, 69536 - 69473
Alignment:
Q  91 aatctaaatccttttgatttaggttaaaa-aatttcacttgaatcaattaattgcaatatcaat 153  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||    
T  69536 aatctaaatccttttgatttaggttaaaacaatttcacttggatcaattaattgcaataccaat 69473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 69619 - 69563
Alignment:
Q  35 acttttgttataacacttgcttatttgaataattgattagtgaattgctagttttga 91  Q
    |||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||    
T  69619 acttttgttatagcacttgattatttgaataattgatttgtgaattgctagttttga 69563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 69168 - 69126
Alignment:
Q  180 accccctctagcttggtattcaactagccatatagaccaacaa 222  Q
    ||||||||||||||||||  || ||||||||||||||||||||    
T  69168 accccctctagcttggtaaccatctagccatatagaccaacaa 69126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 4089 - 4145
Alignment:
Q  35 acttttgttataacacttgcttatttgaataattgattagtgaattgctagttttga 91  Q
    |||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||    
T  4089 acttttgttatagcacttgattatttgaataattgatcagtgaattgctagttttga 4145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 162
Target Start/End: Original strand, 4172 - 4244
Alignment:
Q  91 aatctaaatccttttgatttaggttaaaa-aatttcacttgaatcaattaattgcaatatcaattcaaatatt 162  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||||| |||||||| ||||    
T  4172 aatctaaatccatttgatttaggttaaaacaatttcacttggatcaattgattgcaataccaattcaattatt 4244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 7950 - 7997
Alignment:
Q  174 ctattcaccccctctagcttggtattcaactagccatatagaccaaca 221  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  7950 ctattcaccccctctagcttggtattcaactagccatatagaacaaca 7997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 39045297 - 39045364
Alignment:
Q  91 aatctaaatccttttgatttaggttaaaa-aatttcacttgaatcaattaattgcaatatcaattcaa 157  Q
    ||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||    
T  39045297 aatctaaatccatttgatttaggttaaaacaattttacttggatcaattaattgcaataccaattcaa 39045364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 15411550 - 15411488
Alignment:
Q  91 aatctaaatccttttgatttaggttaaaaaatttcacttgaatcaattaattgcaatatcaattcaa 157  Q
    ||||||||||| ||||||||||||||||| |    ||||| ||||||||||||||||||||||||||    
T  15411550 aatctaaatccatttgatttaggttaaaaca----acttggatcaattaattgcaatatcaattcaa 15411488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 273
Target Start/End: Original strand, 14283593 - 14283640
Alignment:
Q  226 taggttttcctcgaggttacctctagcctaggacttaggtagaactca 273  Q
    |||||||||| ||||||||||| |||||||||| ||||||||||||||    
T  14283593 taggttttccccgaggttacctatagcctaggaattaggtagaactca 14283640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 15452921 - 15452859
Alignment:
Q  91 aatctaaatccttttgatttaggttaaaaaatttcacttgaatcaattaattgcaatatcaattcaa 157  Q
    ||||||||||  ||||||||||||||||| |    ||||| ||||||||||||||||||||||||||    
T  15452921 aatctaaatcaatttgatttaggttaaaaca----acttggatcaattaattgcaatatcaattcaa 15452859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 15411204 - 15411153
Alignment:
Q  173 gctattcaccccc--tctagcttggtattcaactagccatatagaccaacaa 222  Q
    |||||||||||||  | ||||||||||||||||||||||||| |||||||||    
T  15411204 gctattcaccccccttgtagcttggtattcaactagccatattgaccaacaa 15411153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 21324317 - 21324369
Alignment:
Q  221 aaccgtaggttttcctcgaggttacctctagcctaggacttaggtagaactca 273  Q
    ||||||| |||| || ||||||||||| ||||||||||| |||||||||||||    
T  21324317 aaccgtaagtttcccccgaggttacctatagcctaggacctaggtagaactca 21324369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 7405 - 7467
Alignment:
Q  161 tttttcaaaagcgctattcacccc-ctctagcttggtattcaactagccatatagaccaacaa 222  Q
    ||||||||| |||||||||||||| ||||||||||||| ||| ||||||||||||||||||||    
T  7405 tttttcaaacgcgctattcacccccctctagcttggtaatcatctagccatatagaccaacaa 7467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 93 - 157
Target Start/End: Original strand, 21218196 - 21218261
Alignment:
Q  93 tctaaatccttttgatttaggttaaaa-aatttcacttgaatcaattaattgcaatatcaattcaa 157  Q
    ||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||    
T  21218196 tctaaatccatttgatttaggttaaaacaattttacttggatcaattaattgcaataccaattcaa 21218261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 22105941 - 22105883
Alignment:
Q  161 tttttcaaaagcgctattcaccccc-tcta-gcttggtattcaactagccatatagacc 217  Q
    |||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||    
T  22105941 tttttcaaaaacgctattcacccccctctaagcttggtattcaactagccatatagacc 22105883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 22106282 - 22106215
Alignment:
Q  91 aatctaaatccttttgatttaggttaaaaa-atttcacttgaatcaattaattgcaatatcaattcaa 157  Q
    ||||||||||  |||||||||||||||||  |||| ||||| ||||||||||||||| ||||||||||    
T  22106282 aatctaaatctatttgatttaggttaaaactattttacttggatcaattaattgcaaaatcaattcaa 22106215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 21092661 - 21092719
Alignment:
Q  91 aatctaaatccttttgatttaggttaaaa-aatttcacttgaatcaattaattgcaata 148  Q
    ||||||||||| |||| |||||||||||| ||||||| ||| |||||||||||||||||    
T  21092661 aatctaaatccatttggtttaggttaaaacaatttcatttggatcaattaattgcaata 21092719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 273
Target Start/End: Original strand, 10216528 - 10216574
Alignment:
Q  226 taggttttcctcgaggttacctctagcctaggacttaggtagaactca 273  Q
    |||||||||| ||||||||||| |||||||||| ||||||||||||||    
T  10216528 taggttttccccgaggttacctatagcctagga-ttaggtagaactca 10216574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 22106353 - 22106310
Alignment:
Q  48 cacttgcttatttgaataattgattagtgaattgctagttttga 91  Q
    |||||| |||||||| ||||| ||||||||||||||||||||||    
T  22106353 cacttgattatttgattaattcattagtgaattgctagttttga 22106310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 43517166 - 43517217
Alignment:
Q  221 aaccgtaggttttcctcgaggttacctctagcctaggacttaggtagaactca 273  Q
    |||| ||||||| || ||||||||||| |||||||||| ||||||||||||||    
T  43517166 aaccctaggtttcccccgaggttacctatagcctagga-ttaggtagaactca 43517217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 19615313 - 19615246
Alignment:
Q  91 aatctaaatccttttgatttaggttaaaaa-atttcacttgaatcaattaattgcaatatcaattcaa 157  Q
    ||||||||||| |||||||||||||||||  |||| ||||| |||||||| |||||||||||||||||    
T  19615313 aatctaaatccatttgatttaggttaaaactattttacttggatcaattacttgcaatatcaattcaa 19615246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 91
Target Start/End: Complemental strand, 19615372 - 19615340
Alignment:
Q  59 ttgaataattgattagtgaattgctagttttga 91  Q
    |||| ||||||||||||||||||||||||||||    
T  19615372 ttgattaattgattagtgaattgctagttttga 19615340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 25925059 - 25925001
Alignment:
Q  91 aatctaaatccttttgatttaggttaaaa-aatttcacttgaatcaattaattgcaata 148  Q
    ||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||    
T  25925059 aatctaaatccatttgatttaggttaaaacaattttacttggatcaattaattgcaata 25925001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 273
Target Start/End: Original strand, 9340734 - 9340775
Alignment:
Q  231 tttcctcgaggttacctctagcctaggacttaggtagaactca 273  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  9340734 tttcctcgaggttacctctagcctagga-ttaggtagaactca 9340775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 162
Target Start/End: Complemental strand, 23575469 - 23575409
Alignment:
Q  103 tttgatttaggttaaaa-aatttcacttgaatcaattaattgcaatatcaattcaaatatt 162  Q
    ||||||||||||||||| ||||| ||||| ||||||||||||||| | |||||||| ||||    
T  23575469 tttgatttaggttaaaacaattttacttggatcaattaattgcaaaaccaattcaattatt 23575409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 12477789 - 12477838
Alignment:
Q  173 gctattcaccccc-tctagcttggtattcaactagccatatagaccaaca 221  Q
    ||||||||||||| ||||||||||||   |||||||||||||||||||||    
T  12477789 gctattcacccccgtctagcttggtaactaactagccatatagaccaaca 12477838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 19898 - 19850
Alignment:
Q  43 tataacacttgcttatttgaataattgattagtgaattgctagttttga 91  Q
    |||| |||||| |||||||||||||||||| ||||||||||||||||||    
T  19898 tatagcacttggttatttgaataattgattcgtgaattgctagttttga 19850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 157
Target Start/End: Complemental strand, 16833 - 16796
Alignment:
Q  120 aatttcacttgaatcaattaattgcaatatcaattcaa 157  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  16833 aatttcacttggatcaattaattgcaataccaattcaa 16796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 22827096 - 22827046
Alignment:
Q  226 taggttttcctcgaggttacctctagcctaggacttaggtagaactcattga 277  Q
    |||||||||| ||||||||||| |||||||||| ||||||||||||||||||    
T  22827096 taggttttccccgaggttacctatagcctagga-ttaggtagaactcattga 22827046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 29791356 - 29791407
Alignment:
Q  221 aaccgtaggttttcctcgaggttacctctagcctaggacttaggtagaactca 273  Q
    |||||||||||| || | ||||||||||||||||||| |||||||||||||||    
T  29791356 aaccgtaggtttccc-caaggttacctctagcctagggcttaggtagaactca 29791407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 273
Target Start/End: Original strand, 19588 - 19634
Alignment:
Q  226 taggttttcctcgaggttacctctagcctaggacttaggtagaactca 273  Q
    |||||||||| ||||||||||| |||||||||| ||||||||||||||    
T  19588 taggttttccccgaggttacctatagcctagga-ttaggtagaactca 19634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 273
Target Start/End: Complemental strand, 12946 - 12900
Alignment:
Q  226 taggttttcctcgaggttacctctagcctaggacttaggtagaactca 273  Q
    |||||||||||||||||| ||| |||||||||| ||||||||||||||    
T  12946 taggttttcctcgaggttgcctatagcctagga-ttaggtagaactca 12900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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