View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9021_low_35 (Length: 303)
Name: NF9021_low_35
Description: NF9021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9021_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 24041767 - 24042044
Alignment:
| Q |
18 |
tcaatactcaccgtcaatggcgtcgtggagagagtggagaggaacacggtgctgaaacgacgtcgttttttcaatgggcaacaactgtgtgggaccaaac |
117 |
Q |
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| T |
24041767 |
tcaatactcaccgtcaatggcgtcgtggagagagtggagaggaacacggtgctgaaacgacgtcgttttttcaatgggcaacaactgtgtgggaccaaac |
24041866 |
T |
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| Q |
118 |
ctcggtaacaatggtggtttcctacaatccgtttccgcggccgtatggaaaacacgtccgccagaggcaaggcttcctcctcctaatgccgaagatataa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24041867 |
ctcggtaacaatggtggtttcctacaatccgtttccgcggccgtatggaaaacacgtccgccagaggcaaggcttcctcctcctaatgccgaagataaaa |
24041966 |
T |
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| Q |
218 |
acaaaactccgacaacagcggaaaatgctgtaacagattcctcgaaaccagagtctagtgcaggtgggaaagtttctg |
295 |
Q |
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||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| |||| |||||||||||||||| |
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| T |
24041967 |
acaaaactccgacaacaccggaaaatgctgtaacaggttcctcgaaaccggagtcttgtgctggtgggaaagtttctg |
24042044 |
T |
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