View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9021_low_4 (Length: 786)
Name: NF9021_low_4
Description: NF9021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9021_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 594; Significance: 0; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 1 - 740
Target Start/End: Original strand, 2531257 - 2532006
Alignment:
| Q |
1 |
aacactggtcataccagcaggaaaaacatttatggtgtcgaaactaagttttagcggtccttgcaccaacaaaaatattcttattcaggtatttagtata |
100 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2531257 |
aacactggtcatacccgtaggaaaaacatttatggtgtcgaaactaagttttagcggtccttgcaccaacaaaaatattcttattcaggtatttaatata |
2531356 |
T |
|
| Q |
101 |
tctaacgttcacttttaagacctagtacaataaacttataatcatatgtataagtttt------------aattgcggcttttaaaatatttaaagaaat |
188 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2531357 |
tctaacattcacttttaagacctagtacaataaacttataatcatatgtataagttttaattgtatttttaattgcggcttttaaaatatttaaagaaat |
2531456 |
T |
|
| Q |
189 |
tatatttgttttgtatttttgccatctatctttttgtagcttgaagggaaaatagttgcaccttcaaaggtaggttggaaagctcagtcatattggatta |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2531457 |
tatatttgttttgtatttttgccatctatctttttgtagcttgaagggaaaatagttgcaccttcaaaggtaggttggaaagctcagtcatattggatta |
2531556 |
T |
|
| Q |
289 |
ccgtgcaatctgtagaaggactcacaattgaaggtaatggtcgaggagtactcgatggagatggttcgacttggtggcaatgcaaatcatgtgctcgacc |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2531557 |
ccgtgcaatctgtagaaggactcacaattgaaggtaatggtcgaggagtactcgatggagatggttcgacttggtggcaatgcaaatcatgtgctcgacc |
2531656 |
T |
|
| Q |
389 |
tggggtatgtatcatcttaaacaattgaca-ccccctacacacac--gnnnnnnngtgattgaacgaccaaattaatatttttcttgatgctacaggtct |
485 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2531657 |
tggggtatgtatcatcttatacaattgacatccccctacacacaccaaaaaaaaggtgattgaacgaccaaattaatatttttattgatgctacaggtct |
2531756 |
T |
|
| Q |
486 |
tcttgtttcattcatgcaaaggtctcaatgttagtaacctgagtatcactaatagtccacgttcgcatgtagctgttaatatgtgcaatggtgcaacatt |
585 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2531757 |
tcttgtttcattcatgcaagggtctcaatgttagtaatctgagtatcactaatagtccacgttcccatgtagctgttaatatgtgcaatggtgcaacatt |
2531856 |
T |
|
| Q |
586 |
ttctaatatatctattaattcacctgatactagccccaatactgatgggtttgacattgctttatccactaatattttgatacaagattccaacataaaa |
685 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| |
|
|
| T |
2531857 |
ttctaatatatctattaattcacctggtactagccccaatactgatgggtttgacattgctttatccactcatattgtgatacatgattccaacataaaa |
2531956 |
T |
|
| Q |
686 |
tctggtatgtcatgtttatgttatcttaagatattttaaacttttactttgtctt |
740 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2531957 |
tctggtacgtcatgtttatgttatcttaaga-----taaacttttactttgtctt |
2532006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 2540593 - 2541008
Alignment:
| Q |
1 |
aacactggtcataccagcaggaaaaacatttatggtgtcgaaactaagttttagcggtccttgcaccaacaaaaatattcttattcaggtatttagtata |
100 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
2540593 |
aacactggttataccagtaggaaaaacatttatggtgtcgaaactaagttttaacggtccttgcaccaacaaacatattcttattcaggtatttaatata |
2540692 |
T |
|
| Q |
101 |
tctaacgttcacttttaagacctagtacaataaacttataatcatatgtataagttttaattgcggcttttaaaatatttaaagaaattatatttgtttt |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2540693 |
tctaacattcacttttaagacctagtacaataaacttataatcat-tgtataagttttaattgcggcttttaaaatgattaaagaaattatatttgtttt |
2540791 |
T |
|
| Q |
201 |
gtatttttgccatctatctttttgtagcttgaagggaaaatagttgcaccttcaaaggtaggttggaaagctcagtcatattggattaccgtgcaatctg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2540792 |
gtatttttgccatctatctttttgtagcttgaagggaaaatagttgcaccttctaaggtacattggaaagctcagtcatattggattaccgtgcaatctg |
2540891 |
T |
|
| Q |
301 |
tagaaggactcacaattgaaggtaatggtcgaggagtactcgatggagatggttcgacttggtggcaatgcaaatcatgtgctcgacctggggtatgtat |
400 |
Q |
| |
|
||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2540892 |
tagaaggactcacaattaatggtcatggtcgaggagtactcgatggagatggttcgacttggtggcaatgcaaatcatgtgatcgacctggggtatgtat |
2540991 |
T |
|
| Q |
401 |
catcttaaacaattgac |
417 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
2540992 |
catcttaaacaattgac |
2541008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 441 - 740
Target Start/End: Original strand, 2541255 - 2541549
Alignment:
| Q |
441 |
gtgattgaacgaccaaattaatatttttcttgatgctacaggtcttcttgtttcattcatgcaaaggtctcaatgttagtaacctgagtatcactaatag |
540 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2541255 |
gtgattgaacgaccaaattaatatttttattgatgctacaggtcttcttgtttcattcatgcaagggtctcaatgttagtaatctgagtatcactaatag |
2541354 |
T |
|
| Q |
541 |
tccacgttcgcatgtagctgttaatatgtgcaatggtgcaacattttctaatatatctattaattcacctgatactagccccaatactgatgggtttgac |
640 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2541355 |
tccacgttcccatgtagctgttaatatgtgcaatggtgcaacattttctaatatatctattaattcacctggtactagccccaatactgatgggtttgac |
2541454 |
T |
|
| Q |
641 |
attgctttatccactaatattttgatacaagattccaacataaaatctggtatgtcatgtttatgttatcttaagatattttaaacttttactttgtctt |
740 |
Q |
| |
|
||||||||||||||| ||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2541455 |
attgctttatccactcatattgtgatacatgattccaacataaaatctggtacgtcatgtttatgttatcttaaga-----taaacttttactttgtctt |
2541549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 558 - 731
Target Start/End: Original strand, 2549780 - 2549951
Alignment:
| Q |
558 |
ctgttaatatgtgcaatggtgcaacattttctaatatatctattaattcacctgatactagccccaatactgatgggtttgacattgctttatccactaa |
657 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||| |||| ||| |||| |||||||||||| |||||||||||||| || || |||| ||| |
|
|
| T |
2549780 |
ctgttaatatgtgcaatcatgcaacattttcctatatatccattagttctcctgctactagccccaacactgatgggtttgatatatctcattccaataa |
2549879 |
T |
|
| Q |
658 |
tattttgatacaagattccaacataaaatctggtatgtcatgtttatgttatcttaagatattttaaactttta |
731 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| ||| ||||| |||||||| ||||||||||| ||||| |
|
|
| T |
2549880 |
tatcttgatacaagattccaacataaaatctggtaattcaagttta--ttatcttatgatattttaaattttta |
2549951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 491 - 692
Target Start/End: Original strand, 1829849 - 1830050
Alignment:
| Q |
491 |
tttcattcatgcaaaggtctcaatgttagtaacctgagtatcactaatagtccacgttcgcatgtagctgttaatatgtgcaatggtgcaacattttcta |
590 |
Q |
| |
|
|||||||| ||||| | ||| | |||||||||||| || ||||| ||||| || |||| |||||| | |||||||||||||| || ||||||| ||| |
|
|
| T |
1829849 |
tttcattcttgcaacgatcttagtgttagtaacctaaggatcaccaatagcccgagttctcatgtatccattaatatgtgcaatcgtacaacattctctc |
1829948 |
T |
|
| Q |
591 |
atatatctattaattcacctgatactagccccaatactgatgggtttgacattgctttatccactaatattttgatacaagattccaacataaaatctgg |
690 |
Q |
| |
|
|| |||| || |||||||||| |||||| ||||| |||||||||||||||||| |||| |||||| ||||| ||| || ||||||||||||||||||| |
|
|
| T |
1829949 |
atgtatccatcaattcacctgctactagtcccaacactgatgggtttgacatttctttttccactgatattcgtatagaaaattccaacataaaatctgg |
1830048 |
T |
|
| Q |
691 |
ta |
692 |
Q |
| |
|
|| |
|
|
| T |
1830049 |
ta |
1830050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 491 - 692
Target Start/End: Original strand, 1864294 - 1864495
Alignment:
| Q |
491 |
tttcattcatgcaaaggtctcaatgttagtaacctgagtatcactaatagtccacgttcgcatgtagctgttaatatgtgcaatggtgcaacattttcta |
590 |
Q |
| |
|
|||||||| ||||| | ||| | |||||||||||| || ||||| ||||| || |||| |||||| | |||||||||||||| || ||||||| ||| |
|
|
| T |
1864294 |
tttcattcttgcaacgatcttagtgttagtaacctaaggatcaccaatagcccgagttctcatgtatccattaatatgtgcaatcgtacaacattctctc |
1864393 |
T |
|
| Q |
591 |
atatatctattaattcacctgatactagccccaatactgatgggtttgacattgctttatccactaatattttgatacaagattccaacataaaatctgg |
690 |
Q |
| |
|
|| |||| || |||||||||| |||||| ||||| |||||||||||||||||| |||| |||||| ||||| ||| || ||||||||||||||||||| |
|
|
| T |
1864394 |
atgtatccatcaattcacctgctactagtcccaacactgatgggtttgacatttctttttccactgatattcgtatagaaaattccaacataaaatctgg |
1864493 |
T |
|
| Q |
691 |
ta |
692 |
Q |
| |
|
|| |
|
|
| T |
1864494 |
ta |
1864495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 494 - 643
Target Start/End: Original strand, 2555216 - 2555365
Alignment:
| Q |
494 |
cattcatgcaaaggtctcaatgttagtaacctgagtatcactaatagtccacgttcgcatgtagctgttaatatgtgcaatggtgcaacattttctaata |
593 |
Q |
| |
|
||||| ||||| |||||||||||||| ||| |||| ||| ||||| ||| | || ||||| ||||||| |||||||||| | ||||||||||| ||| |
|
|
| T |
2555216 |
cattcctgcaatggtctcaatgttagaaacttgaggatcctgaatagcccaagatctcatgttgctgttactatgtgcaatcattcaacattttctcata |
2555315 |
T |
|
| Q |
594 |
tatctattaattcacctgatactagccccaatactgatgggtttgacatt |
643 |
Q |
| |
|
||||||||||||| ||| |||||||||||| |||||||||||||||||| |
|
|
| T |
2555316 |
tatctattaattctgctgctactagccccaacactgatgggtttgacatt |
2555365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 494 - 643
Target Start/End: Original strand, 2564890 - 2565039
Alignment:
| Q |
494 |
cattcatgcaaaggtctcaatgttagtaacctgagtatcactaatagtccacgttcgcatgtagctgttaatatgtgcaatggtgcaacattttctaata |
593 |
Q |
| |
|
||||| ||||| |||||||||||||| ||| |||| ||| ||||| ||| || ||||| ||||||||||||||||| | ||||||||||| ||| |
|
|
| T |
2564890 |
cattcctgcaatggtctcaatgttaggaacttgaggatcttgaatagcccaaaatctcatgtttctgttaatatgtgcaatcattcaacattttctcata |
2564989 |
T |
|
| Q |
594 |
tatctattaattcacctgatactagccccaatactgatgggtttgacatt |
643 |
Q |
| |
|
||||||||||||| ||| | |||||||||| |||||||| ||||||||| |
|
|
| T |
2564990 |
tatctattaattctgctgctgctagccccaacactgatggatttgacatt |
2565039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 205 - 365
Target Start/End: Original strand, 1829582 - 1829743
Alignment:
| Q |
205 |
ttttgccatctatcttt-ttgtagcttgaagggaaaatagttgcaccttcaaaggtaggttggaaagctcagtcatattggattaccgtgcaatctgtag |
303 |
Q |
| |
|
|||| |||||||||| | ||| ||||||||||| | ||||||||||| || |||| | || |||||| || ||||||||| |||| | ||| |||| |
|
|
| T |
1829582 |
tttttccatctatctatattgcagcttgaagggcagatagttgcaccctctaaggcaaattcgaaagcacaatcatattggtttactattgaatatgtaa |
1829681 |
T |
|
| Q |
304 |
aaggactcacaattgaaggtaatggtcgaggagtactcgatggagatggttcgacttggtgg |
365 |
Q |
| |
|
| |||||||||||||| |||||||||| ||||| ||| |||||||| ||||| ||||||||| |
|
|
| T |
1829682 |
atggactcacaattgatggtaatggtcaaggaggacttgatggagacggttctacttggtgg |
1829743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 205 - 365
Target Start/End: Original strand, 1864027 - 1864188
Alignment:
| Q |
205 |
ttttgccatctatcttt-ttgtagcttgaagggaaaatagttgcaccttcaaaggtaggttggaaagctcagtcatattggattaccgtgcaatctgtag |
303 |
Q |
| |
|
|||| |||||||||| | ||| ||||||||||| | ||||||||||| || |||| | || |||||| || ||||||||| |||| | ||| |||| |
|
|
| T |
1864027 |
tttttccatctatctatattgcagcttgaagggcagatagttgcaccctctaaggcaaattcgaaagcacaatcatattggtttactattgaatatgtaa |
1864126 |
T |
|
| Q |
304 |
aaggactcacaattgaaggtaatggtcgaggagtactcgatggagatggttcgacttggtgg |
365 |
Q |
| |
|
| |||||||||||||| |||||||||| ||||| ||| |||||||| ||||| ||||||||| |
|
|
| T |
1864127 |
atggactcacaattgatggtaatggtcaaggaggacttgatggagacggttctacttggtgg |
1864188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 1827854 - 1827912
Alignment:
| Q |
1 |
aacactggtcataccagcaggaaaaacatttatggtgtcgaaactaagttttagcggtc |
59 |
Q |
| |
|
|||||| || ||||| ||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
1827854 |
aacactagttataccggcaggaaaaacatttatggtgtcgaaagtaatttttagcggtc |
1827912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 1862299 - 1862357
Alignment:
| Q |
1 |
aacactggtcataccagcaggaaaaacatttatggtgtcgaaactaagttttagcggtc |
59 |
Q |
| |
|
|||||| || ||||| ||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
1862299 |
aacactagttataccggcaggaaaaacatttatggtgtcgaaagtaatttttagcggtc |
1862357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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