View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9021_low_40 (Length: 254)
Name: NF9021_low_40
Description: NF9021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9021_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 31213831 - 31213609
Alignment:
| Q |
18 |
agagtgtggagtttaccttttagtccataatttgcaagatttatggtagagattgatttggatttgtcacactgaactcctttccagttgcatggactag |
117 |
Q |
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| T |
31213831 |
agagtgtggagtttaccttttagtccataatttgcaagatttatggtagagatggatttggatttgtcacattgaattccttcccagttgcatggactcg |
31213732 |
T |
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| Q |
118 |
tagttcttgtccaagttgacagcagagcttggctgtggttgtcaaagctatctttccatttcaacagagcaactg---cttcattggaaaaaccagcaac |
214 |
Q |
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| T |
31213731 |
tagttcttgtccaagttgacagcagagcttggctgtggttgtcaaagctatctttccatttcaacagagcaactgcttcttcattggaaaaaccagcaac |
31213632 |
T |
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| Q |
215 |
ttgttgaggaaaaatgattgtta |
237 |
Q |
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| T |
31213631 |
ttgttgaggaaaaatgattgtta |
31213609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 31138428 - 31138259
Alignment:
| Q |
17 |
gagagtgtggagtttaccttttagtccataatttgcaagatttatggtagagattgatttggatttgtcacactgaactcctttccagt---tgcatgga |
113 |
Q |
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| T |
31138428 |
gagagagtgaagtgtaccttttagtccaaaattttcaaggtttatggtagaaatggatttcgagttgtcacaaaaaattcctttccattttgtgcatgta |
31138329 |
T |
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| Q |
114 |
ctagtagttcttgtccaagttgacagcagagcttggctgtggttgtcaaagctatctttccatttcaaca |
183 |
Q |
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| T |
31138328 |
tttgtggtatttttccaagttgacaagagagactggctttggttgtcaaagctatgtttccattttaaca |
31138259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 178
Target Start/End: Complemental strand, 31182143 - 31181982
Alignment:
| Q |
17 |
gagagtgtggagtttaccttttagtccataatttgcaagatttatggtagagattgatttggatttgtcacactgaactcctttccagttgcatggacta |
116 |
Q |
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| T |
31182143 |
gagagagtgaagtgtaccttttagtcctaaactttcaaggtttatggtagtaattgaattggacttgtcacaatgaattccttgccatctgcatggattt |
31182044 |
T |
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| Q |
117 |
gtagttcttgtccaagttgacagcagagcttggctgtggttgtcaaagctatctttccattt |
178 |
Q |
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| T |
31182043 |
gtggtatttttccaagttggcaagagagcttgacttggattgtcaaagctatttttccattt |
31181982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 178
Target Start/End: Complemental strand, 31101051 - 31100887
Alignment:
| Q |
17 |
gagagtgtggagtttaccttttagtccataatttgcaagatttatggtagagattgatttggatttgtcacactgaactcctttcca---gttgcatgga |
113 |
Q |
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| T |
31101051 |
gagagagtgaagtgtaccttttagtcctaaatttgcaagatctatggtagaaatgagattggatttgtcacactcaattcctctccatttgctgcatgga |
31100952 |
T |
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| Q |
114 |
ctagtagttcttgtccaagttgacagcagagcttggctgtggttgtcaaagctatctttccattt |
178 |
Q |
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| T |
31100951 |
tttgtggtatttttccaagttgacaagatactttgactttggttgtcaaagctagctttccattt |
31100887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 31056616 - 31056446
Alignment:
| Q |
17 |
gagagtgtggagtttaccttttagtccataatttgcaagatttatggtagagattgatttggatttgtcacactgaactcctttccagttg------cat |
110 |
Q |
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| T |
31056616 |
gagagagtgaagtgtaccttttaatcctaaatttgcaagacctatggtagaaatgaaattggatttgtcacacttaattcctctccatttgggtttgcat |
31056517 |
T |
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| Q |
111 |
ggactagtagttcttgtccaagttgacagcagagcttggctgtggttgtcaaagctatctttccatttcaa |
181 |
Q |
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| T |
31056516 |
ggatttgtgttatttttccaagttgacaagagagtttgactttggtcgtcaaagctatctttccatttcaa |
31056446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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