View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9021_low_43 (Length: 239)
Name: NF9021_low_43
Description: NF9021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9021_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 38624034 - 38623829
Alignment:
| Q |
18 |
ctaaccttattagatcttt-actttattgaggctaacagtgaaatggcaaaacgacgccacttattgagaaagcaattaggaaagaattgtattctcaag |
116 |
Q |
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| T |
38624034 |
ctaatcttattagatcttttactttattgaggataacagtgaaatggcaaaacgacgcctcttattgagaaagcaattaggaaagaattgtattctcaag |
38623935 |
T |
|
| Q |
117 |
tcgtgtattctga-ttgaatgaaattgattgaattgtagagttcaatttacggtatttatatatttaccgatcatccatttaggttggggttaacctaca |
215 |
Q |
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| T |
38623934 |
tcgtgtattttgatttcaatgaaattgattgaactgtagagttcaatttacggtatttatatatttacttatcatccatttaggttggggttaacctaca |
38623835 |
T |
|
| Q |
216 |
tcgagt |
221 |
Q |
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|||||| |
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| T |
38623834 |
tcgagt |
38623829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 221
Target Start/End: Complemental strand, 38659300 - 38659189
Alignment:
| Q |
110 |
tctcaagtcgtgtattctgattgaatgaaattgattgaattgtagagttcaatttacggtatttatatatttaccgatcatccatttaggttggggttaa |
209 |
Q |
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|||||| ||||||||| |||||||||||||||||||||| | |||||| ||||||||| ||||| | || | |||||||| ||||||||||| ||| |
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| T |
38659300 |
tctcaattcgtgtattttgattgaatgaaattgattgaaccgaagagtttggtttacggtacttatagacttccttatcatccacttaggttggggataa |
38659201 |
T |
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| Q |
210 |
cctacatcgagt |
221 |
Q |
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|||||| ||||| |
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| T |
38659200 |
cctacaccgagt |
38659189 |
T |
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