View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9021_low_45 (Length: 233)

Name: NF9021_low_45
Description: NF9021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9021_low_45
NF9021_low_45
[»] chr1 (3 HSPs)
chr1 (1-222)||(39446363-39446584)
chr1 (1-184)||(39467700-39467884)
chr1 (172-206)||(39467902-39467936)
[»] chr7 (7 HSPs)
chr7 (37-99)||(27284855-27284918)
chr7 (153-222)||(27284678-27284747)
chr7 (46-99)||(32069009-32069062)
chr7 (39-99)||(1096835-1096894)
chr7 (49-97)||(7474545-7474593)
chr7 (44-99)||(3877741-3877796)
chr7 (133-196)||(32069165-32069228)
[»] chr8 (1 HSPs)
chr8 (39-97)||(12050929-12050987)
[»] chr5 (3 HSPs)
chr5 (5-47)||(23781368-23781410)
chr5 (5-47)||(23868321-23868363)
chr5 (41-97)||(31778587-31778643)
[»] scaffold0351 (1 HSPs)
scaffold0351 (49-97)||(2896-2944)
[»] chr6 (3 HSPs)
chr6 (39-97)||(28052223-28052281)
chr6 (7-71)||(30453360-30453424)
chr6 (41-95)||(19840960-19841014)
[»] chr3 (1 HSPs)
chr3 (40-97)||(27056854-27056911)
[»] chr4 (1 HSPs)
chr4 (41-97)||(1509462-1509518)


Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 39446363 - 39446584
Alignment:
Q  1 cacaacaagaaaatcaatgatttgctacgaaaataatggtagctaatctctagcaaaactcatttagctactatttaattgggaattagctgtcatatta 100  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39446363 cacaacaagaaaatcaacgatttactacgaaaataatggtagctaatctctagcaaaactcatttagctactattaaattgggaattagctgtcatatta 39446462  T
Q  101 ggaaaactctagctaatttcaaactacacgctgcaatatactggtcaaaaaattatatttccttgctatttagttaggatatttactcaataatttcgaa 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  39446463 ggaaaactctagctaatttcaaactacaccctgcaatatactggtcaaaaaattatatttcctagctatttagttaggatatttcctcaataatttcgaa 39446562  T
Q  201 gtaaataactagccacaggttc 222  Q
    ||||||||||||||||||||||    
T  39446563 gtaaataactagccacaggttc 39446584  T

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Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 39467700 - 39467884
Alignment:
Q  1 cacaacaagaaaatcaatgatttgctacgaaaataatggtagctaatctctagcaaaactcatttagctactatttaattgggaattagctgtcatatta 100  Q
    |||||||||||||||||| ||||||||||||| || |  |||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||| ||    
T  39467700 cacaacaagaaaatcaattatttgctacgaaattattaatagctaatctctagcaaaactcatttagctacaatttaattaggaatttgctgtcatacta 39467799  T
Q  101 ggaaaactctagctaatttcaaactacacgct-gcaatatactggtcaaaaaattatatttccttgctatttagttaggatattt 184  Q
    | ||||||||||||||||||||||||||| || ||||||||| |||||||| |||||||||||| ||||||||||||||||||||    
T  39467800 gcaaaactctagctaatttcaaactacaccctagcaatataccggtcaaaacattatatttcctagctatttagttaggatattt 39467884  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 39467902 - 39467936
Alignment:
Q  172 agttaggatatttactcaataatttcgaagtaaat 206  Q
    ||||||||||||| |||||||||||||||||||||    
T  39467902 agttaggatatttcctcaataatttcgaagtaaat 39467936  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 27284918 - 27284855
Alignment:
Q  37 tggtagctaa-tctctagcaaaactcatttagctactatttaattgggaattagctgtcatatt 99  Q
    |||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27284918 tggtagctaaatctttagcataactcatttagctactatttaattgggaattagctgtcatatt 27284855  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 27284747 - 27284678
Alignment:
Q  153 ttatatttccttgctatttagttaggatatttactcaataatttcgaagtaaataactagccacaggttc 222  Q
    ||||||||||| ||||||||| |||||||||| ||||||||||| |||| |||| |||||||||| ||||    
T  27284747 ttatatttcctagctatttaggtaggatatttcctcaataattttgaagcaaatcactagccacatgttc 27284678  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 32069009 - 32069062
Alignment:
Q  46 atctctagcaaaactcatttagctactatttaattgggaattagctgtcatatt 99  Q
    |||||||||||||| ||||||||||||| ||  |||||||||||||||||||||    
T  32069009 atctctagcaaaacacatttagctactactttgttgggaattagctgtcatatt 32069062  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 1096894 - 1096835
Alignment:
Q  39 gtagctaatctctagcaaaactcatttagctactatttaattgggaattagctgtcatatt 99  Q
    ||||||||| |||||||||||||||||| |||| ||||| ||| || ||||||||||||||    
T  1096894 gtagctaat-tctagcaaaactcatttacctaccatttagttgtgatttagctgtcatatt 1096835  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 7474593 - 7474545
Alignment:
Q  49 tctagcaaaactcatttagctactatttaattgggaattagctgtcata 97  Q
    ||||||||||||||||||||||||||||  ||| || ||||||||||||    
T  7474593 tctagcaaaactcatttagctactattttgttgtgatttagctgtcata 7474545  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 3877796 - 3877741
Alignment:
Q  44 taatctctagcaaaactcatttagctactatttaattgggaattagctgtcatatt 99  Q
    |||| ||||| |||||||||||||||||| ||| |||||||||||| || ||||||    
T  3877796 taatttctagtaaaactcatttagctactgttttattgggaattagttgccatatt 3877741  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 32069165 - 32069228
Alignment:
Q  133 gcaatatactggtcaaaaaattatatttccttgctatttagttaggatatttactcaataattt 196  Q
    |||||||||||  ||||| |||||||||||| |||| ||||||||||||||  | |||||||||    
T  32069165 gcaatatactgtacaaaagattatatttcctagctacttagttaggatattgccgcaataattt 32069228  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 12050987 - 12050929
Alignment:
Q  39 gtagctaatctctagcaaaactcatttagctactatttaattgggaattagctgtcata 97  Q
    |||||||||  |||||||||||||||||||||||||||| |||||||| ||||||||||    
T  12050987 gtagctaattcctagcaaaactcatttagctactatttagttgggaatcagctgtcata 12050929  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 23781410 - 23781368
Alignment:
Q  5 acaagaaaatcaatgatttgctacgaaaataatggtagctaat 47  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  23781410 acaagaaaatcaatgatatgctacgaaaataatggtagctaat 23781368  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 23868363 - 23868321
Alignment:
Q  5 acaagaaaatcaatgatttgctacgaaaataatggtagctaat 47  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  23868363 acaagaaaatcaatgatatgctacgaaaataatggtagctaat 23868321  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 31778587 - 31778643
Alignment:
Q  41 agctaatctctagcaaaactcatttagctactatttaattgggaattagctgtcata 97  Q
    ||||||| ||| |||||||||||||||||||  |||| ||| || ||||||||||||    
T  31778587 agctaatttcttgcaaaactcatttagctaccctttagttgtgatttagctgtcata 31778643  T

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Target: scaffold0351 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 2896 - 2944
Alignment:
Q  49 tctagcaaaactcatttagctactatttaattgggaattagctgtcata 97  Q
    ||||||||||||||||||||||||||||| ||| || ||||||||||||    
T  2896 tctagcaaaactcatttagctactatttagttgtgatttagctgtcata 2944  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 28052281 - 28052223
Alignment:
Q  39 gtagctaatctctagcaaaactcatttagctactatttaattgggaattagctgtcata 97  Q
    ||||||||| ||||||||||||||||||||||| ||||  ||| || ||||||||||||    
T  28052281 gtagctaatttctagcaaaactcatttagctaccatttggttgtgatttagctgtcata 28052223  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 30453424 - 30453360
Alignment:
Q  7 aagaaaatcaatgatttgctacgaaaataatggtagctaatctctagcaaaactcatttagctac 71  Q
    |||||||||| ||||||||||| |||  ||| ||||||||| |||||| ||||||||||| ||||    
T  30453424 aagaaaatcattgatttgctacaaaacaaatcgtagctaatttctagcgaaactcatttacctac 30453360  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 19841014 - 19840960
Alignment:
Q  41 agctaatctctagcaaaactcatttagctactatttaattgggaattagctgtca 95  Q
    ||||||| |||||||||||||||||| |||| ||||| ||| || ||||||||||    
T  19841014 agctaatttctagcaaaactcatttacctaccatttagttgtgatttagctgtca 19840960  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 27056854 - 27056911
Alignment:
Q  40 tagctaatctctagcaaaactcatttagctactatttaattgggaattagctgtcata 97  Q
    |||||||| |||||||||||||||||| |||| ||||| ||| || ||||||||||||    
T  27056854 tagctaatttctagcaaaactcatttacctaccatttagttgtgatttagctgtcata 27056911  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 1509462 - 1509518
Alignment:
Q  41 agctaatctctagcaaaactcatttagctactatttaattgggaattagctgtcata 97  Q
    ||||||| |||||||||||||||||||||||  |||| ||| || ||||||||||||    
T  1509462 agctaatttctagcaaaactcatttagctaccttttagttgtgatttagctgtcata 1509518  T

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