View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9021_low_46 (Length: 230)

Name: NF9021_low_46
Description: NF9021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9021_low_46
NF9021_low_46
[»] chr5 (4 HSPs)
chr5 (18-230)||(2998418-2998630)
chr5 (27-230)||(2998211-2998414)
chr5 (23-230)||(2998005-2998211)
chr5 (23-230)||(2997798-2998005)
[»] chr2 (6 HSPs)
chr2 (26-230)||(32716494-32716698)
chr2 (23-215)||(32717130-32717322)
chr2 (23-226)||(32716705-32716908)
chr2 (23-230)||(32716908-32717115)
chr2 (89-224)||(32717328-32717463)
chr2 (151-230)||(32714080-32714159)
[»] chr6 (5 HSPs)
chr6 (23-187)||(14905433-14905597)
chr6 (23-215)||(14904812-14905004)
chr6 (23-215)||(14905019-14905211)
chr6 (23-116)||(14905226-14905319)
chr6 (162-230)||(14904744-14904812)
[»] chr8 (1 HSPs)
chr8 (175-227)||(34544943-34544995)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 2998630 - 2998418
Alignment:
Q  18 ttaaacatgtgtactttcccttgctatgaaaaatatcattctcgaagttaccaacgtagatatttccattggattttgtaagggtgccgcgaccatgacg 117  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  2998630 ttaaacatgtgtactttcccttgccatgaaaaatatcattctcgaagttaccaacgtagatatccccattggattttgtaagggtgccgcgaccatgacg 2998531  T
Q  118 ggagttcttggagaattcaccctcaaaaattgatcctgatgaaaatatgatccgacatttccctgtccttcttccatcaaaccaaccaccctcgtatact 217  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |    
T  2998530 ggagttcttggagaattcaccctcaaaaattgatcctgatgaatatatgatccgacctttccctgtccttcttccatcaaaccaaccacccttgtatatt 2998431  T
Q  218 gttccatttgacc 230  Q
    |||||||||||||    
T  2998430 gttccatttgacc 2998418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 27 - 230
Target Start/End: Complemental strand, 2998414 - 2998211
Alignment:
Q  27 tgtactttcccttgctatgaaaaatatcattctcgaagttaccaacgtagatatttccattggattttgtaagggtgccgcgaccatgacgggagttctt 126  Q
    |||||||||| |||| ||| |||| ||| || ||||||||||||||||||||||  |||| ||||||||| |||||| || ||| ||||||||| ||| |    
T  2998414 tgtactttccgttgccatggaaaagatcgttatcgaagttaccaacgtagatatccccatcggattttgtcagggtgtcgtgactatgacgggaattcat 2998315  T
Q  127 ggagaattcaccctcaaaaattgatcctgatgaaaatatgatccgacatttccctgtccttcttccatcaaaccaaccaccctcgtatactgttccattt 226  Q
    ||||||||||||||||||| ||| |||||||| | |||||||||| | |||||||||||||  | |||||| |||| ||||||| |||| ||||||||||    
T  2998314 ggagaattcaccctcaaaacttgttcctgatggatatatgatccgtcctttccctgtcctttgttcatcaacccaatcaccctcatatattgttccattt 2998215  T
Q  227 gacc 230  Q
    ||||    
T  2998214 gacc 2998211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 230
Target Start/End: Complemental strand, 2998211 - 2998005
Alignment:
Q  23 catgtgtactttcccttgctatgaaaaatatcattctcgaagttaccaacgtagatatttccattggattttgtaagggtgccgcgaccatgacgggagt 122  Q
    ||||||| |||||||| || ||| |||||||  ||||| |||||||||| ||||||||  ||||  |||||| |||||||||||  ||||| |||||| |    
T  2998211 catgtgtgctttccct-gccatggaaaatattgttctcaaagttaccaatgtagatatccccatcagattttttaagggtgccgtaaccattacgggaat 2998113  T
Q  123 tcttggagaattcaccctcaaaaattgatcctgatgaaaatatgatccgacatttccctgtccttcttccatcaaaccaaccaccctcgtatactgttcc 222  Q
    |  | |||||||||||||||||||||| |  | ||| | |||| || || | ||||||||||| ||||||||||| |||| ||||||| |||| ||||||    
T  2998112 ttctcgagaattcaccctcaaaaattgttttttatggatatattattcgtcctttccctgtccgtcttccatcaacccaatcaccctcatatattgttcc 2998013  T
Q  223 atttgacc 230  Q
    | ||||||    
T  2998012 acttgacc 2998005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 230
Target Start/End: Complemental strand, 2998005 - 2997798
Alignment:
Q  23 catgtgtactttcccttgctatgaaaaatatcattctcgaagttaccaacgtagatatttccattggattttgtaagggtgccgcgaccatgacgggagt 122  Q
    ||||||||||||||||||| ||| |||| |||||| || |||||||||| | ||| ||  ||||||||||||||||| |||||  |||||||||| || |    
T  2998005 catgtgtactttcccttgccatggaaaagatcattttcaaagttaccaatgaagacatccccattggattttgtaagagtgccatgaccatgacgagaat 2997906  T
Q  123 tcttggagaattcaccctcaaaaattgatcctgatgaaaatatgatccgacatttccctgtccttcttccatcaaaccaaccaccctcgtatactgttcc 222  Q
    || |  ||||||||||||||||| ||| || ||| | |  ||||| | | | |||||| |||||| || ||| || |||| ||||||| || | ||||||    
T  2997905 tcctaaagaattcaccctcaaaacttgctcttgacggatttatgaccggtcctttcccagtccttttttcattaacccaatcaccctcatagattgttcc 2997806  T
Q  223 atttgacc 230  Q
    | ||||||    
T  2997805 acttgacc 2997798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 26 - 230
Target Start/End: Complemental strand, 32716698 - 32716494
Alignment:
Q  26 gtgtactttcccttgctatgaaaaatatcattctcgaagttaccaacgtagatatttccattggattttgtaagggtgccgcgaccatgacgggagttct 125  Q
    |||||||||||||||| ||| |||| |||| |||||||||||||||||||||||   |||| ||||||| |||| |||||||||||||||||||| |||     
T  32716698 gtgtactttcccttgccatggaaaagatcactctcgaagttaccaacgtagatacccccatcggattttttaagagtgccgcgaccatgacgggaattcc 32716599  T
Q  126 tggagaattcaccctcaaaaattgatcctgatgaaaatatgatccgacatttccctgtccttcttccatcaaaccaaccaccctcgtatactgttccatt 225  Q
    |  |||||| |||||||||| ||| |||||||| | |||||||||| | ||||||||||||| ||||||||| |||| ||||||| |||| |||||||||    
T  32716598 taaagaattgaccctcaaaacttgctcctgatggatatatgatccgccctttccctgtcctttttccatcaacccaatcaccctcatatattgttccatt 32716499  T
Q  226 tgacc 230  Q
    |||||    
T  32716498 tgacc 32716494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 23 - 215
Target Start/End: Complemental strand, 32717322 - 32717130
Alignment:
Q  23 catgtgtactttcccttgctatgaaaaatatcattctcgaagttaccaacgtagatatttccattggattttgtaagggtgccgcgaccatgacgggagt 122  Q
    |||||||||||||| |||| |||  ||| |||| ||||||||||||||| ||||||||  ||||  |||||| ||||||||||| ||||||||||||| |    
T  32717322 catgtgtactttcctttgccatggtaaagatcactctcgaagttaccaatgtagatatccccatcagattttttaagggtgccgtgaccatgacgggaat 32717223  T
Q  123 tcttggagaattcaccctcaaaaattgatcctgatgaaaatatgatccgacatttccctgtccttcttccatcaaaccaaccaccctcgtata 215  Q
    ||  ||||||||||||||||||| |||||||||||| | |||||||| ||| |||||| ||| |||||||||||| |||| ||||||||||||    
T  32717222 tcccggagaattcaccctcaaaagttgatcctgatggatatatgatctgacctttcccagtcattcttccatcaacccaatcaccctcgtata 32717130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 32716908 - 32716705
Alignment:
Q  23 catgtgtactttcccttgctatgaaaaatatcattctcgaagttaccaacgtagatatttccattggattttgtaagggtgccgcgaccatgacgggagt 122  Q
    |||||||||||||| |||| ||| |||| |||| |||||||||||||||||||||||   |||| ||||||| |||| |||||| ||||||||||||| |    
T  32716908 catgtgtactttcctttgccatggaaaagatcactctcgaagttaccaacgtagatacccccatcggattttttaagagtgccgtgaccatgacgggaat 32716809  T
Q  123 tcttggagaattcaccctcaaaaattgatcctgatgaaaatatgatccgacatttccctgtccttcttccatcaaaccaaccaccctcgtatactgttcc 222  Q
    || |  |||||| |||||||||| ||| |||||||| | |||||||||| | ||||||||||||| ||||||||| |||| ||||||| |||| ||||||    
T  32716808 tcctaaagaattgaccctcaaaacttgctcctgatggatatatgatccgccctttccctgtcctttttccatcaacccaatcaccctcatatattgttcc 32716709  T
Q  223 attt 226  Q
    ||||    
T  32716708 attt 32716705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 23 - 230
Target Start/End: Complemental strand, 32717115 - 32716908
Alignment:
Q  23 catgtgtactttcccttgctatgaaaaatatcattctcgaagttaccaacgtagatatttccattggattttgtaagggtgccgcgaccatgacgggagt 122  Q
    ||||||||||||||||||| ||  |||| |||| ||| ||||||||||| ||||| ||  ||||||||| | |||||||||||  ||||||||||||| |    
T  32717115 catgtgtactttcccttgccattgaaaagatcactcttgaagttaccaatgtagacatgcccattggatatggtaagggtgccttgaccatgacgggaat 32717016  T
Q  123 tcttggagaattcaccctcaaaaattgatcctgatgaaaatatgatccgacatttccctgtccttcttccatcaaaccaaccaccctcgtatactgttcc 222  Q
    || |  |||||| |||||||||| ||| |||||||  | |||| ||  | | ||||||||||||||||||||||| |||| |||| ||||||| ||||||    
T  32717015 tcctaaagaattgaccctcaaaacttgttcctgatagatatatcatttgccctttccctgtccttcttccatcaacccaatcaccatcgtatattgttcc 32716916  T
Q  223 atttgacc 230  Q
    || |||||    
T  32716915 atgtgacc 32716908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 224
Target Start/End: Complemental strand, 32717463 - 32717328
Alignment:
Q  89 gattttgtaagggtgccgcgaccatgacgggagttcttggagaattcaccctcaaaaattgatcctgatgaaaatatgatccgacatttccctgtccttc 188  Q
    ||||||||| | || ||| ||||||||  ||| ||| | |||||||||||||||||| ||| |||||||| | |||| ||||| | ||||||||||||||    
T  32717463 gattttgtatgagttccgtgaccatgaaaggaattcctagagaattcaccctcaaaacttgctcctgatggatatattatccgtcctttccctgtccttc 32717364  T
Q  189 ttccatcaaaccaaccaccctcgtatactgttccat 224  Q
    ||||||||| |||| |||||||||||| ||||||||    
T  32717363 ttccatcaacccaatcaccctcgtatattgttccat 32717328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 32714159 - 32714080
Alignment:
Q  151 tcctgatgaaaatatgatccgacatttccctgtccttcttccatcaaaccaaccaccctcgtatactgttccatttgacc 230  Q
    |||||||| | |||||||||| | ||||||||||||| ||||||||| |||| ||||||| |||| ||||||||||||||    
T  32714159 tcctgatggatatatgatccgccctttccctgtcctttttccatcaacccaatcaccctcatatattgttccatttgacc 32714080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 187
Target Start/End: Original strand, 14905433 - 14905597
Alignment:
Q  23 catgtgtactttcccttgctatgaaaaatatcattctcgaagttaccaacgtagatatttccattggattttgtaagggtgccgcgaccatgacgggagt 122  Q
    ||||||||||||||||||| ||| |||  | || ||| ||||||||||| ||||| ||| || ||||||||||||||||||||  ||||||||||||| |    
T  14905433 catgtgtactttcccttgccatggaaagaaccactcttgaagttaccaatgtagagattcccgttggattttgtaagggtgccttgaccatgacgggaat 14905532  T
Q  123 tcttggagaattcaccctcaaaaattgatcctgatgaaaatatgatccgacatttccctgtcctt 187  Q
    || |  ||||||||||||||||| ||| |||||||| | |||| ||||| | |||||| ||||||    
T  14905533 tcctaaagaattcaccctcaaaacttgctcctgatggatatatcatccgccctttcccagtcctt 14905597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 23 - 215
Target Start/End: Original strand, 14904812 - 14905004
Alignment:
Q  23 catgtgtactttcccttgctatgaaaaatatcattctcgaagttaccaacgtagatatttccattggattttgtaagggtgccgcgaccatgacgggagt 122  Q
    |||||||| ||||| |||| ||| |||| |||||||| ||||||||||| ||||| ||  || ||||||||| |||||||| || |||||||||| || |    
T  14904812 catgtgtattttcctttgccatggaaaagatcattcttgaagttaccaatgtagacatccccgttggattttataagggtgtcgtgaccatgacgagaat 14904911  T
Q  123 tcttggagaattcaccctcaaaaattgatcctgatgaaaatatgatccgacatttccctgtccttcttccatcaaaccaaccaccctcgtata 215  Q
      ||  ||||||||||||||||| ||  |||||||| |||||| ||||| | |||||||||| || ||||||||| |||  ||||||| ||||    
T  14904912 ctttaaagaattcaccctcaaaactttctcctgatggaaatatcatccgccctttccctgtcttttttccatcaacccagtcaccctcatata 14905004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 215
Target Start/End: Original strand, 14905019 - 14905211
Alignment:
Q  23 catgtgtactttcccttgctatgaaaaatatcattctcgaagttaccaacgtagatatttccattggattttgtaagggtgccgcgaccatgacgggagt 122  Q
    ||||||||||||||||||| ||| |||| | ||||||| ||||||||||  |||| ||  || |||||| ||||||||||| || | ||||||| |  ||    
T  14905019 catgtgtactttcccttgccatggaaaagaccattctcaaagttaccaatatagagatccccgttggatcttgtaagggtgtcgtgtccatgactgatgt 14905118  T
Q  123 tcttggagaattcaccctcaaaaattgatcctgatgaaaatatgatccgacatttccctgtccttcttccatcaaaccaaccaccctcgtata 215  Q
    || | |||||| ||||||||||| ||| | |||||| ||| || || || | |||||||||||| ||||||| || |||| ||||||| ||||    
T  14905119 tcattgagaatccaccctcaaaacttgcttctgatggaaagatcattcgtcctttccctgtcctgcttccataaacccaatcaccctcatata 14905211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 14905226 - 14905319
Alignment:
Q  23 catgtgtactttcccttgctatgaaaaatatcattctcgaagttaccaacgtagatatttccattggattttgtaagggtgccgcgaccatgac 116  Q
    |||||| |||||||||||| ||| |||| || ||||||||||||||||||||||| ||  |||||||| | ||||| ||||||| |||||||||    
T  14905226 catgtgcactttcccttgccatggaaaagattattctcgaagttaccaacgtagacatccccattggaatgtgtaaaggtgccgtgaccatgac 14905319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 14904744 - 14904812
Alignment:
Q  162 atatgatccgacatttccctgtccttcttccatcaaaccaaccaccctcgtatactgttccatttgacc 230  Q
    |||||||| | ||||||||||||||||||||||||| |||| ||||||| |||| | ||||||| ||||    
T  14904744 atatgatctgtcatttccctgtccttcttccatcaacccaatcaccctcatatatttttccattcgacc 14904812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 34544943 - 34544995
Alignment:
Q  175 tttccctgtccttcttccatcaaaccaaccaccctcgtatactgttccatttg 227  Q
    |||||||||| || ||||||||| |||  |||||||||||| |||||||||||    
T  34544943 tttccctgtcatttttccatcaacccagtcaccctcgtatattgttccatttg 34544995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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