View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9021_low_48 (Length: 215)
Name: NF9021_low_48
Description: NF9021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9021_low_48 |
 | |
|
| [»] scaffold1425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 49277053 - 49276860
Alignment:
| Q |
13 |
acctgtggtggcttgtttagaaacttgttcggccatcttaatgacatcttcccaggtgactttgttaacnnnnnnnnnnnnnnnnnnnngagtttgatct |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
49277053 |
acctgtggtggcttgtttagaaacttgttcggccatcttaatgacatcttcccaggtgactttgttaacgaaagaagaagaagaagaaggagtttgatct |
49276954 |
T |
|
| Q |
113 |
aaaacttgaagggtttcatggattgtggcgaggtgtgaacctaagacaaggttcaggcgctctttctctgctcttgctggcatctctgcttctc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49276953 |
aaaacttgaagggtttcatggattgtggcgaggtgtgaacctaagacaaggttcaggcgctctttctctgctcttgctggcatctttgcttctc |
49276860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 50484651 - 50484715
Alignment:
| Q |
13 |
acctgtggtggcttgtttagaaacttgttcggccatcttaatgacatcttcccaggtgactttgt |
77 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||| |
|
|
| T |
50484651 |
acctgtggtggcttgtttggaaacttgttcagccatcttaatgacatcttcccatgttactttgt |
50484715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 41637802 - 41637866
Alignment:
| Q |
13 |
acctgtggtggcttgtttagaaacttgttcggccatcttaatgacatcttcccaggtgactttgt |
77 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
41637802 |
acctgtggtggcttgtttggaaacttgttcagccatcttaatgacatcttcccaggttactttgt |
41637866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 48499796 - 48499732
Alignment:
| Q |
15 |
ctgtggtggcttgtttagaaacttgttcggccatcttaatgacatcttcccaggtgactttgtta |
79 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48499796 |
ctgtggtggcttgtttagaaacttgttcaaccatcttaatgacatcttcccaggttactttgtta |
48499732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1425 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1425
Description:
Target: scaffold1425; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 656 - 596
Alignment:
| Q |
146 |
tgtgaacctaagacaaggttcaggcgctctttctctgctcttgctggcatctctgcttctc |
206 |
Q |
| |
|
||||||||||||| |||||| || |||||||||||||||||||||||||||| || ||||| |
|
|
| T |
656 |
tgtgaacctaagagaaggttaagacgctctttctctgctcttgctggcatctttgattctc |
596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University