View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9021_low_5 (Length: 710)
Name: NF9021_low_5
Description: NF9021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9021_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 593
Target Start/End: Complemental strand, 21033364 - 21032801
Alignment:
| Q |
18 |
cttacaagtacccatgcttccaagctagcaaccaatgctgttaaacatcggttagttacgattttacctagtgctttaactggtttgacttttgtaactt |
117 |
Q |
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| T |
21033364 |
cttacaagtacccatgcttccgagctagcaaccaatgctgttagacattggttagttacgattttacctagtgcttt---------gacttttgtaactt |
21033274 |
T |
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| Q |
118 |
tgctctgatcaaggttatcaagattgatagattgcaagatcataaagcaataaaacgcaaaattgcaattaggattaggggcagtaagattg-------- |
209 |
Q |
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| T |
21033273 |
tgctctgatcaaggttatcaagattgatagattgcaagatcataaaacaataaaacgcgaaattccaattaggattaggggcagtaagattgcaaaatgt |
21033174 |
T |
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| Q |
210 |
-------gaagatcctacctaagtt---aagttttaaaactagaccaaccaaatccacaataaacaactactcaaatcttaaaaacaatgaagtccacaa |
299 |
Q |
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| T |
21033173 |
aagattggaagatcctacctaagttcataagttttaaaaaaagaccaaccaaatccacaataaacaactactcaaatcttaaaaacaatgaagtccacaa |
21033074 |
T |
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| Q |
300 |
aaaagtaattgagattagttaattgaaatttattacattggagaccacaaatttatgtggccctactagactgagggattagttcgagtagtataagcga |
399 |
Q |
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| T |
21033073 |
aaaagtaattgagattagttaattgagatttattacattggagaccacaaatttatgtggccctactagactgagggattagtttgagtagtataagcga |
21032974 |
T |
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| Q |
400 |
ggatgctcaattaaactactcagactaatccctctaaccttatagggacatccctctagccatatagggacacatgaataacaaagtccttacgcaaaag |
499 |
Q |
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| T |
21032973 |
ggatgctcaattaaactactcagactaatccctctagccatatagggac----------------------acatgaataacaaagtccttacgcaaaag |
21032896 |
T |
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| Q |
500 |
tcttaacattgacacttggagtgttagcttagaggtaaaaatttaaccttgcaactaaaaggttgtccaataccg-tatatttatactgactagg |
593 |
Q |
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| T |
21032895 |
tcttaacattgacacttggagtgttagcttagaggtaagaatttaaccttgcaactaaaaggttgtccaataccgctatatttatactgattagg |
21032801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 633 - 701
Target Start/End: Complemental strand, 21032761 - 21032693
Alignment:
| Q |
633 |
aggcatatcattagttataaatagtgtatgtttatgcggttgtcaaataagttttatatttcttgatgt |
701 |
Q |
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| T |
21032761 |
aggcatatcattagttataaatagtgtatgtttatacggttgtcaaataagttgtatatttcttgatgt |
21032693 |
T |
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