View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9021_low_7 (Length: 584)
Name: NF9021_low_7
Description: NF9021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9021_low_7 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 584; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Complemental strand, 23853405 - 23852822
Alignment:
| Q |
1 |
taccaattaactagagttcaattacatagagactcaattgtgtttgaatataaggtgtccccaaatataaataagtgctcaagatatgcacggaaataga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23853405 |
taccaattaactagagttcaattacatagagactcaattgtgtttgaatataaggtgtccccaaatataaataagtgctcaagatatgcacggaaataga |
23853306 |
T |
|
| Q |
101 |
acatcaacatgactcgttccaaatataaaaatgaacaaatgaaaggacataataaaatgagatgcctatttaagttgtgttggttgtgtcacggttgtgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23853305 |
acatcaacatgactcgttccaaatataaaaatgaacaaatgaaaggacataataaaatgagatgcctatttaagttgtgttggttgtgtcacggttgtgt |
23853206 |
T |
|
| Q |
201 |
tgtgcccacccgacttgcagctctgcttcagtctcttcccttaaatatggatagaaaccaaagttttgctttttcagttgtttcacttttgagtacatat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23853205 |
tgtgcccacccgacttgcagctctgcttcagtctcttcccttaaatatggatagaaaccaaagttttgctttttcagttgtttcacttttgagtacatat |
23853106 |
T |
|
| Q |
301 |
ttcatgttactatgttcctgtggccattcatcatttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagctttaatgatccattat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23853105 |
ttcatgttactatgttcctgtggccattcatcatttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagctttaatgatccattat |
23853006 |
T |
|
| Q |
401 |
ttagactttcctcttggaaaggaaatgactgttgtaaatggaaaggtataagttgcagcaacatcacaggacatgttgtaaaaattgaccttaggaatcc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23853005 |
ttagactttcctcttggaaaggaaatgactgttgtaaatggaaaggtataagttgcagcaacatcacaggacatgttgtaaaaattgaccttaggaatcc |
23852906 |
T |
|
| Q |
501 |
atgttacccacaaaaaggagaacaatttgattcaaactgtccctactcaaaatctaagcttgaagctcagtatatccatcctgc |
584 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23852905 |
atgttacccacaaaaaggagaacaatttgattcaaactgtccctactcaaaatctaagcttgaagctcagtatatccatcctgc |
23852822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 165 - 514
Target Start/End: Complemental strand, 23752535 - 23752191
Alignment:
| Q |
165 |
cctatttaagttgtgttggttgtgtcacggttgtgttgtgcccacccgacttgcagctctgcttcagtctcttcccttaaatatggatagaaaccaaagt |
264 |
Q |
| |
|
|||||||||||||||||||||| ||| | ||||||||||||| |||| |||| ||||||| || ||||||| ||||||| |||||||||||||| |
|
|
| T |
23752535 |
cctatttaagttgtgttggttgagtccc-----cgttgtgcccacccaacttacagcgttgcttcattcacttccctcaaatatgcatagaaaccaaagt |
23752441 |
T |
|
| Q |
265 |
tttgctttttcagttgtttcacttttgagtacatatttcatgttactatgttcctgtggccattcatcatttggttgcatggaacaagagaggaaagctc |
364 |
Q |
| |
|
| ||||||| |||||||| |||||||| |||| |||||||||||||||||| || |||||||||||||||||||||| |||||||||||| |||| | |
|
|
| T |
23752440 |
tatgcttttgttgttgtttcccttttgagcacatgtttcatgttactatgttctagtagccattcatcatttggttgcatagaacaagagaggcaagcac |
23752341 |
T |
|
| Q |
365 |
ttcttgaaatcaaaggaagctttaatgatccattatttagactttcctcttggaaaggaaatgactgttgtaaatggaaaggtataagttgcagcaacat |
464 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||| ||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
23752340 |
ttcttgaactcaaaggaagctttaatgatacatcattaagactttcctcttgggaaggaaatgaatgttgtaaatggaaaggtataagttgcagcaacat |
23752241 |
T |
|
| Q |
465 |
cacaggacatgttgtaaaaattgaccttaggaatccatgttacccacaaa |
514 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
23752240 |
tacaggtcatgttgttaaaattgaccttaggaatccatgctacccacaaa |
23752191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 235 - 514
Target Start/End: Complemental strand, 22619863 - 22619584
Alignment:
| Q |
235 |
cttcccttaaatatggatagaaaccaaagttttgctttttcagttgtttcacttttgagtacatatttcatgttactatgttcctgtggccattcatcat |
334 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| ||||||| |||||||| |||||||| |||| |||||||||||||||||| || |||||||||||| |
|
|
| T |
22619863 |
cttccctcaaatatgcatagaaaccaaagttatgcttttgttgttgtttcccttttgagcacatgtttcatgttactatgttctagtagccattcatcat |
22619764 |
T |
|
| Q |
335 |
ttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagctttaatgatccattatttagactttcctcttggaaaggaaatgactgttg |
434 |
Q |
| |
|
|||||||| | |||||||||||| |||||||| | | | |||||||||||||||||||| ||| ||| ||||||||||||||| |||||||||| ||||| |
|
|
| T |
22619763 |
ttggttgcttagaacaagagaggcaagctcttttagcactcaaaggaagctttaatgatacatcattaagactttcctcttgggaaggaaatgaatgttg |
22619664 |
T |
|
| Q |
435 |
taaatggaaaggtataagttgcagcaacatcacaggacatgttgtaaaaattgaccttaggaatccatgttacccacaaa |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
22619663 |
taaatggaaaggtataagttgcagcaacattacaggtcatgttataaaaattgaccttaggaatccatgctacccacaaa |
22619584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University