View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9021_low_9 (Length: 570)
Name: NF9021_low_9
Description: NF9021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9021_low_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 19 - 555
Target Start/End: Original strand, 4039004 - 4039540
Alignment:
| Q |
19 |
tagggagcaacaacgagccaatgatcaggatcgtcaggagatgcaacaacaagtggatgcatatggagaattatcaaaagatttctcaattgatcagttc |
118 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
4039004 |
tagggagcaacaacgagccaatgatcacgatcgtcaggagatgcaacaacaagtggatgcatatggagaagtatcaaaagatttctcaattgatcaattc |
4039103 |
T |
|
| Q |
119 |
actgatttccttaatgaccatgaggattatagcacaagcaacaatgaattgatcaatgacactgcacaattcgattacatttcgagtagttttgaatcgt |
218 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4039104 |
actgatttcctcaatgatcatgaggattatagcacaagcaacaatgaattgatcaatgacactgcacaattcgattacatttcgagtagttttgaatcgt |
4039203 |
T |
|
| Q |
219 |
gtttaaccgaaaacaatggctgcaaggaggatgaaatgaatatggaatctaaatcaaacaatgtgacacaaacttcaagtggtgatagcaattcagaaga |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4039204 |
gtttaaccgaaaacaatggctgcaaggaggatgaaatgaatatggaatctaaatcaaacaatgtgacagaaacttcaagtggtgatagcaattcagaaga |
4039303 |
T |
|
| Q |
319 |
tggtgaagaggaagtcaataatgacgtaagtgttgatgttcctgattttcggtttctcgacgatattgctccaactagttactactcaccttttgagatt |
418 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4039304 |
tggtgaagaggaagtcaataatgatgtaagtgttgatgttcctgattttcggtttctcgacgatattgctccaactagttactactcaccttttgagatt |
4039403 |
T |
|
| Q |
419 |
gctgaggaaatggaagagcaaatggtggagaatgagagcttttgtgatgagccttcaatgattagagctgttatgaagagaatgaaatatgagagaaaat |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4039404 |
gctgaggaaatggaagagcaaatggtggagaatgagagcttttgtgatgagccttcaatgattagagctgttatgaagagaatgaaatatgagagaaaat |
4039503 |
T |
|
| Q |
519 |
tttcagcttctctttatgcattcaatggaatacctga |
555 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4039504 |
tttcagcttctctttatgcattcaatggaatacctga |
4039540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 462 - 555
Target Start/End: Original strand, 3161255 - 3161348
Alignment:
| Q |
462 |
gtgatgagccttcaatgattagagctgttatgaagagaatgaaatatgagagaaaattttcagcttctctttatgcattcaatggaatacctga |
555 |
Q |
| |
|
|||||||| |||||||| | ||| || |||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3161255 |
gtgatgagtcttcaatgctaagaaatgctatgaagagaatgaaatatgagaggaaattctcagcttctctttatgctttcaatggaatacctga |
3161348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University