View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9022_high_1 (Length: 660)
Name: NF9022_high_1
Description: NF9022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9022_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 609; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 15 - 651
Target Start/End: Complemental strand, 4927111 - 4926475
Alignment:
| Q |
15 |
aaacatgtcagaagaaggacatgagattcataacaattatattcagagtgaggacctgcagctggttgaggaaagtgataattcatctggttcttctaaa |
114 |
Q |
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| T |
4927111 |
aaacatgtcagaagaaggacatgagattcataacaattatattcagagtgaggacctgcagctggttgaggaaagtgataattcatctggttcttctaaa |
4927012 |
T |
|
| Q |
115 |
aaatggtcttcctttgatttgaatgaagaagctacaagtgaagataacaaccatgaagcaacacttgaggagaatgagaatgagaaggaaaatattgaag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4927011 |
aaatggtcttcctttgatttgaatgaagaagctacaagtgaagataacaaccatgaagcaacacttgaggagaatgagaatgagaaggaaaatattgaag |
4926912 |
T |
|
| Q |
215 |
gtaatagtagatcaagagaaggaaataatgaaagaagaggcaaggttagacattatgttagatccaagatgcctaggttaaggtggactcctgagcttca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4926911 |
gtaatagtagatcaagagaaggaaataatgaaagaagaggcaaggttagacattatgttagatccaagatgcctaggttaaggtggactcctgagcttca |
4926812 |
T |
|
| Q |
315 |
tcattcttttttgcatgctgttgaaagacttggtggtctagaaagtaagcatttcatttgtttataagtgctaagattatatactttataatgatcatat |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4926811 |
tcattcttttttgcatgctgttgaaagacttggtggtctagaaagtaagcatttcatttgtttataagtgctaagattatatactttataatgaacatat |
4926712 |
T |
|
| Q |
415 |
atagtgaaaattaatatttggttgaactatgatgcaggagcaacacccaagttggtgcttcagttaatgagtgtgagaggactcaatattggtcatgtca |
514 |
Q |
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| T |
4926711 |
atagtgaaaattaatatttggttgaactatgatgcaggagcaacacccaagttggtgcttcagttaatgagtgtgagaggactcaatattggtcatgtca |
4926612 |
T |
|
| Q |
515 |
agtctcacttgcaggtaccacaacaaattgaagtttaagatgataatcactttacttttttaagctnnnnnnnntagttccttttgtaaattagtatgtt |
614 |
Q |
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| T |
4926611 |
agtctcacttgcaggtaccacaacaaattgaagtttaagatgataatcactttacttttttaagctaaaaaaaatagttccttttgtaaattagtatgtt |
4926512 |
T |
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| Q |
615 |
ttgtttgttaagttttttatctcaagattagtattat |
651 |
Q |
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| T |
4926511 |
ttgtttgttaagttttttatctcaagattagtattat |
4926475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 450 - 497
Target Start/End: Original strand, 35401578 - 35401625
Alignment:
| Q |
450 |
aggagcaacacccaagttggtgcttcagttaatgagtgtgagaggact |
497 |
Q |
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| T |
35401578 |
aggagcaacacccaagttggttctccagttgatgaatgtgagaggact |
35401625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 363
Target Start/End: Original strand, 35400528 - 35400633
Alignment:
| Q |
258 |
ggttagacattatgttagatccaagatgcctaggttaaggtggactcctgagcttcatcattcttttttgcatgctgttgaaagacttggtggtctagaa |
357 |
Q |
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||||||||| ||||| || || || ||||||||| | | ||||||||||| |||||| |||||| ||||||||||||| || ||||| || | |||| |
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| T |
35400528 |
ggttagacaatatgtgaggtcgaaaatgcctaggcttcgttggactcctgatcttcatttatcttttgtgcatgctgttgagaggcttggagggcaagaa |
35400627 |
T |
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| Q |
358 |
agtaag |
363 |
Q |
| |
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|||||| |
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| T |
35400628 |
agtaag |
35400633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 262 - 347
Target Start/End: Original strand, 35848302 - 35848387
Alignment:
| Q |
262 |
agacattatgttagatccaagatgcctaggttaaggtggactcctgagcttcatcattcttttttgcatgctgttgaaagacttgg |
347 |
Q |
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| T |
35848302 |
agacaatatgttagatcaaagatgcctaggcttcggtggactcctgatcttcatcactcctttatgcatgctgttgaaaggcttgg |
35848387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 446 - 532
Target Start/End: Original strand, 35848540 - 35848626
Alignment:
| Q |
446 |
atgcaggagcaacacccaagttggtgcttcagttaatgagtgtgagaggactcaatattggtcatgtcaagtctcacttgcaggtac |
532 |
Q |
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||||||||||||||||||| ||||||||||| | |||| |||||||||||||| |||| |||||||||| ||| |||||||||| |
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| T |
35848540 |
atgcaggagcaacacccaaattggtgcttcaactgatgaatgtgagaggactcagcattgctcatgtcaagagtcatttgcaggtac |
35848626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 363
Target Start/End: Complemental strand, 25679691 - 25679590
Alignment:
| Q |
262 |
agacattatgttagatccaagatgcctaggttaaggtggactcctgagcttcatcattcttttttgcatgctgttgaaagacttggtggtctagaaagta |
361 |
Q |
| |
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|||| |||||||||||||||| | |||||| || | ||||||||||| |||||| | |||| | |||||||| ||||||||||||| | ||| |||| |
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| T |
25679691 |
agaccttatgttagatccaagtttcctaggctacgttggactcctgatcttcattttcgttttcttcatgctgtgcaaagacttggtggacaagagagta |
25679592 |
T |
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| Q |
362 |
ag |
363 |
Q |
| |
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|| |
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|
| T |
25679591 |
ag |
25679590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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