View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9022_low_12 (Length: 322)
Name: NF9022_low_12
Description: NF9022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9022_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 306
Target Start/End: Original strand, 36765871 - 36766162
Alignment:
| Q |
14 |
tcgtgttcaagcgtccgaccttccatagcaactatgaagtgcgatttgtatgggaaacatgtacnnnnnnnnnnnnnnnnnnnnntacactatgctgtaa |
113 |
Q |
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| T |
36765871 |
tcgtgttcaagcgtccgaccttccatagcaactatgaagtgcgatttgtatgggaaacatgtacaaaagaaagaagaagaaaaaatacactatgctgtaa |
36765970 |
T |
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| Q |
114 |
catatacaattaagtaaagccaaccaaacattttaactgtatatattttggtacatactttgcaggagttttgaacttacagcctttggcaaagtgttca |
213 |
Q |
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| T |
36765971 |
cacatacaat-aagtaaagccaaccaaacattttaactgtatatattttggtacatactttgcaggagttttgaacttacagcctttggcaaagtgttca |
36766069 |
T |
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| Q |
214 |
aactccatacagcttttattaatcaacatattatgtttaaacagaaagagactaacaatacaaagacctgtttgtcaaaggcacccaaaaatc |
306 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36766070 |
aactccatacaacttttattaatcaacatattatgtttaaacagaaagagactaacaatacaaaggcctgtttgtcaaaggcacccaaaaatc |
36766162 |
T |
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