View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9022_low_13 (Length: 298)
Name: NF9022_low_13
Description: NF9022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9022_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 15 - 283
Target Start/End: Original strand, 6947793 - 6948050
Alignment:
| Q |
15 |
agcataggtaaatctacaatgcagttcttttcatgatgaaaacgaagtgtaacaaaaaatcccatgttaaaatataataatcaacaaaagcagtggcctc |
114 |
Q |
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| T |
6947793 |
agcataggtaaatctacaatgcagttcttt-catgatgaaaacgaagcgtaacataatatcccatgttaaaatataataatcaacaaa-gcagtggcctc |
6947890 |
T |
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| Q |
115 |
ttaactatcttaaccatataaagttttagagactaaaccctagactctaatcagttttcaaaagtgcattgattttcacgacgaacttcctcatcttcct |
214 |
Q |
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| T |
6947891 |
tt---------aaccatataaagttttagagactaaaccctagactctaatcagttttcaaaagtgcattgattttcacaacgaacttcctcatcttcct |
6947981 |
T |
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| Q |
215 |
cgggacggtaagcattcacaatgttgaaaatcttactaatctcctccggcttcttatccttgatcatgt |
283 |
Q |
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| T |
6947982 |
tgggacggtaagcattcacaatgttgaaaatcttactaatctcctccggcttcttatccttgatcatgt |
6948050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 6950264 - 6950367
Alignment:
| Q |
15 |
agcataggtaaatcta-caatgcagttcttttcatgatgaaaacgaagtgtaacaaaaaatcccatgttaaaatataataatcaacaaaagcagtggcct |
113 |
Q |
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| T |
6950264 |
agcatagataaatctaacaatgcagttcttt-catgatgaaaacgaagcgtaacataatatcccatgttaaaatataataaacaac-aaagcagtggtct |
6950361 |
T |
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| Q |
114 |
cttaac |
119 |
Q |
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|||||| |
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| T |
6950362 |
cttaac |
6950367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 283
Target Start/End: Complemental strand, 11160986 - 11160853
Alignment:
| Q |
150 |
aaccctagactctaatcagttttcaaaagtgcattgattttcacgacgaacttcctcatcttcctcgggacggtaagcattcacaatgttgaaaatctta |
249 |
Q |
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| T |
11160986 |
aaccctagactctaatcattcgtcaaaagcccattgagtttcgctacggacttcctcctcttcctccggagtgtaatcattaataatgttgaaagtctta |
11160887 |
T |
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| Q |
250 |
ctaatctcctccggcttcttatccttgatcatgt |
283 |
Q |
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| T |
11160886 |
cgaatctcctccggcgtcctacccttgatcatgt |
11160853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 278
Target Start/End: Original strand, 11179071 - 11179163
Alignment:
| Q |
186 |
attttcacgacgaacttcctcatcttcctcgggacggtaagcattcacaatgttgaaaatcttactaatctcctccggcttcttatccttgat |
278 |
Q |
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| T |
11179071 |
attttcgcgacgaacttcctcctcttcctctggggtgtaatcattcttaatgttgaaaatcttgcgaatctcctctggtgtcttgtccttgat |
11179163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 172
Target Start/End: Original strand, 6950380 - 6950411
Alignment:
| Q |
141 |
tagagactaaaccctagactctaatcagtttt |
172 |
Q |
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| T |
6950380 |
tagagactaaaccctagactctaatcagtttt |
6950411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 52791795 - 52791852
Alignment:
| Q |
227 |
cattcacaatgttgaaaatcttactaatctcctccggcttcttatccttgatcatgtt |
284 |
Q |
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| T |
52791795 |
cattctcaatgttgaaagccttgcaaatctcctccggcgtcttacccttgatcatgtt |
52791852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 122 - 283
Target Start/End: Original strand, 661917 - 662078
Alignment:
| Q |
122 |
tcttaaccatataaagttttagagactaaaccctagactctaatcagttttcaaaagtgcattgattttcacgacgaacttcctcatcttcctcgggacg |
221 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| || |||| ||| ||||| |
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| T |
661917 |
tcttaaccatataaaattttagagactaaaccctagactctaattagttttcaaaagtgcattgattttcacgacaaacttcatcctcttactccggacg |
662016 |
T |
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| Q |
222 |
gtaagcattcacaatgttgaaaatcttactaatctcctccggcttcttatccttgatcatgt |
283 |
Q |
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| T |
662017 |
gtaagcatttataatgttgaaaatcttaccaatatcctccggcttcttatccttgatcatgt |
662078 |
T |
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