View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9022_low_15 (Length: 254)
Name: NF9022_low_15
Description: NF9022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9022_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 8e-73; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 29 - 202
Target Start/End: Complemental strand, 40387994 - 40387820
Alignment:
| Q |
29 |
atgataatgat-agtccatataactattaagggtcaatatattctttctcaagatacaatttggtaattctattaacttacaagaggtaattcaatcctg |
127 |
Q |
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| T |
40387994 |
atgataatgatgagtccatataactattaagggtcaatatattctttctcaatgtacaatttggtaaatctgttaacttacaagaggtaattcaatcctg |
40387895 |
T |
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| Q |
128 |
taataaatgaggcaattcaatatagttacaagagagactatcaaggaaaaatatacaatttacaaagcaaattta |
202 |
Q |
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| T |
40387894 |
taataaaagaggcaattcaatctagttacaagagagactataaaggaaaaatatacaatttacaaagcaaattta |
40387820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 51 - 166
Target Start/End: Complemental strand, 40378014 - 40377897
Alignment:
| Q |
51 |
ctattaagggtcaatatattctttctcaagatacaatttggtaattctattaacttacaagaggtaattcaatcctgtaat--aaatgaggcaattcaat |
148 |
Q |
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| T |
40378014 |
ctattaagggtcaatatattctttctcgatgtataatttggtaaatctattaacttacaagagggaattcaatcatgtaataaaaaagaggcaatttaat |
40377915 |
T |
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| Q |
149 |
atagttacaagagagact |
166 |
Q |
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| T |
40377914 |
ctggttgcaagagagact |
40377897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 40334717 - 40334658
Alignment:
| Q |
53 |
attaagggtcaatatattctttctcaagatacaatttggtaattctattaacttacaaga |
112 |
Q |
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| T |
40334717 |
attaagggtcaatatattctctctgaatggacaatttggtaaatctattgacttacaaga |
40334658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 40334641 - 40334596
Alignment:
| Q |
157 |
aagagagactatcaaggaaaaatatacaatttacaaagcaaattta |
202 |
Q |
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| T |
40334641 |
aagagagactacaaaggaaaaatacacaacttacaaagcaaattta |
40334596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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