View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9022_low_3 (Length: 529)
Name: NF9022_low_3
Description: NF9022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9022_low_3 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 18 - 517
Target Start/End: Complemental strand, 3940864 - 3940365
Alignment:
| Q |
18 |
gatgataggcgtaatggtaatccagtgactcaacatgagattcaagatttttccgattgtctgctgcataatagactataggaagtgagaacaatcggag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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|
| T |
3940864 |
gatgataggcgtaatggtaatccagtgactcaacatgagattcaagatttttccgattgtctgctgcataataggctatcagaagtgagaacaatcggag |
3940765 |
T |
|
| Q |
118 |
attattatacttggtgtaataaccaaactagtggagatagaatatattctaagatagacagatttattgctaatactagttggctgcaaaagttcaccaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3940764 |
attattatacttggtgtaataaccaaactagtggagatagaatatattctaagatagatagatttattgctaatactagttggctgcaaaagttcaccaa |
3940665 |
T |
|
| Q |
218 |
tgcagtgggcgaagtgcttcctaaaggagtatctgatcactgtccaatatctatggatatgtcttgtcctgcttctcctaagaatactccttttagattt |
317 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3940664 |
tgcagtggacgaagtgcttcctaaaggagcatctgatcactgtcctatatctatggatatgtcttgtcctgcttctcctaagaatactccttttagattt |
3940565 |
T |
|
| Q |
318 |
attaatgttttgactgaccatcatctttttcctgccttgatacaagagaaatggggtccgaatttgcatactaatctcttgaccaatatatggttcaagt |
417 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
3940564 |
attaatgatttgactgaccatcatctttttcctgccttgatacaagagaaatggggtccgaatttgcatactaatctcttgactaatatatggttcaagt |
3940465 |
T |
|
| Q |
418 |
tgaaagccttgaaaaaagatctaaaagagttaaattctacacattttcaaggtattgccaaaagagttgaagatgctagaactactttagttgatgtcca |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||| |
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|
| T |
3940464 |
tgaaagccttgaaaaaagatctaaaagagttaaattctacacattttcaaggtattgccaaaaaagttgaagatgctagaactgctttagttgacgtcca |
3940365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 114 - 189
Target Start/End: Original strand, 5666373 - 5666448
Alignment:
| Q |
114 |
ggagattattatacttggtgtaataaccaaactagtggagatagaatatattctaagatagacagatttattgcta |
189 |
Q |
| |
|
||||| ||||| || ||||| ||||||||| | ||||| |||||||| |||||||||||||| || |||||||||| |
|
|
| T |
5666373 |
ggagagtattacacatggtgcaataaccaagcaagtggtgatagaatctattctaagatagataggtttattgcta |
5666448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 18 - 517
Target Start/End: Complemental strand, 33634096 - 33633614
Alignment:
| Q |
18 |
gatgataggcgtaatggtaatccagtgactcaacatgagattcaagatttttccgattgtctgctgcataatagactataggaagtgagaacaatcggag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33634096 |
gatgataggcgtaatggtaatccagtgactcaacatgagattcaagatttttccgattgtctgctgcataatagactatcggaagtgagaacaatcggag |
33633997 |
T |
|
| Q |
118 |
attattatacttggtgtaataaccaaactagtggagatagaatatattctaagatagacagatttattgctaatactagttggctgcaaaagttcaccaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33633996 |
attattatacttggtgtaataaccaaactagtggagatagaatatattctaagatagacagatttattgctaatactagttggctgcaaaagttcaccaa |
33633897 |
T |
|
| Q |
218 |
tgcagtgggcgaagtgcttcctaaaggagtatctgatcactgtccaatatctatggatatgtcttgtcctgcttctcctaagaatactccttttagattt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33633896 |
tgcagtgggcgaagtgcttcctaaaggagtatctgatcactgtcctatatctatggatatgtcttgtcctgcttctcctaagaatactccttttagattt |
33633797 |
T |
|
| Q |
318 |
attaatgttttgactgaccatcatctttttcctgccttgatacaagagaaatggggtccgaatttgcatactaatctcttgaccaatatatggttcaagt |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33633796 |
attaatgttttgactgaccatcatctttttcctgccttgatacaagagaaatggggtccgaatttgcatac-----------------tatggttcaagt |
33633714 |
T |
|
| Q |
418 |
tgaaagccttgaaaaaagatctaaaagagttaaattctacacattttcaaggtattgccaaaagagttgaagatgctagaactactttagttgatgtcca |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33633713 |
tgaaagccttgaaaaaagatctaaaagagttaaattctacacattttcaaggtattgtcaaaaaagttgaagatgttagaactactttagttgatgtcca |
33633614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 18264832 - 18264654
Alignment:
| Q |
18 |
gatgataggcgtaatggtaatccagtgactcaacatgagattcaagatttttccgattgtctgctgcataatagactataggaagtgagaacaatcggag |
117 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18264832 |
gatgataggcgtaatggtaatccattgactcaacatgagattcaagatttttccgattgtctgctgcataatagactatcggaagtgagaacaatcggag |
18264733 |
T |
|
| Q |
118 |
attattatacttggtgtaataaccaaactagtggagatagaatatattctaagatagacagatttattgctaatactag |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18264732 |
attattatacttggtgtaataaccaaactaatggagatagaatatattccaagatagacagatttattgctaatactag |
18264654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 517
Target Start/End: Complemental strand, 35169132 - 35168632
Alignment:
| Q |
18 |
gatgataggcgtaatggtaatccagtgactcaacatgagattcaagatttttccgattgtctgctgcataatagactataggaagtgagaacaatcggag |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| ||||||| |||| |||||||||||||||||||| |
|
|
| T |
35169132 |
gatgataggcttaatggtaatccagtgactgaacatgatattcaagatttttccgaatgtctgctccataataagctatcggaagtgagaacaatcggag |
35169033 |
T |
|
| Q |
118 |
attattatacttggtgtaataaccaaactagtggagatagaatatattctaagatagacagatttattgctaatactagttggctgcaaaagttcaccaa |
217 |
Q |
| |
|
|| ||||||| ||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||| ||||| ||| |
|
|
| T |
35169032 |
atcattatacatggtgtaataaccaagctagtggagatagaatctattataagatagacagatttattgctaacactagttggctgcaaaggttcaacaa |
35168933 |
T |
|
| Q |
218 |
tgcagtgggcgaagtgcttcctaaaggagtatctgatcactgtccaatatctatggatatgtcttgtcctgcttctcctaagaatactccttttagattt |
317 |
Q |
| |
|
|||| |||| ||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
35168932 |
tgcactgggtgaagttcttcctaaaggagtatctgatcactgtcctatatgtatggatatgtcttgtcctgcttctccaaagaatactcctttcctattt |
35168833 |
T |
|
| Q |
318 |
attaatgttttgactgaccatcatct-ttttcctgccttgatacaagagaaatggggtccgaatttgcatactaatctcttgaccaatatatggttcaag |
416 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||| | |||||||| ||||||| ||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35168832 |
attaatgtattgactgaccatcatcttttttccttcgttgatacaggagaaatagggtcagaatttgcatactaatctcttgactaatatatggttcaag |
35168733 |
T |
|
| Q |
417 |
ttgaaagccttgaaaaaagatctaaaagagttaaattctacacattttcaaggtattgccaaaagagttgaagatgctagaactactttagttgatgtcc |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35168732 |
ttgaaagccttgaaaaaagatctaaaagagttaaattctacacattttcaaggtactaccaaaaaagttgaagatgctagaactgctttagttgatgtcc |
35168633 |
T |
|
| Q |
517 |
a |
517 |
Q |
| |
|
| |
|
|
| T |
35168632 |
a |
35168632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 396 - 517
Target Start/End: Complemental strand, 30282752 - 30282631
Alignment:
| Q |
396 |
ttgaccaatatatggttcaagttgaaagccttgaaaaaagatctaaaagagttaaattctacacattttcaaggtattgccaaaagagttgaagatgcta |
495 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||| |
|
|
| T |
30282752 |
ttgactaatatatggttcaagttgaaagccttgaaaaaagatctaaaagagttaaattctacacattttcaaggtaataccaaaaaagttgaagatgcta |
30282653 |
T |
|
| Q |
496 |
gaactactttagttgatgtcca |
517 |
Q |
| |
|
||||| |||||||||| ||||| |
|
|
| T |
30282652 |
gaactgctttagttgacgtcca |
30282631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 30 - 498
Target Start/End: Original strand, 40950869 - 40951337
Alignment:
| Q |
30 |
aatggtaatccagtgactcaacatgagattcaagatttttccgattgtctgctgcataatagactataggaagtgagaacaatcggagattattatactt |
129 |
Q |
| |
|
|||||||||| || |||||||| || |||||||||||| | |||||| |||| ||||| || | || || ||||| || || |||||||| |||| |
|
|
| T |
40950869 |
aatggtaatctggttactcaacaggaaattcaagattttgcagattgtatgctcactaataatctttcagaggtaagaactataggtgattattacactt |
40950968 |
T |
|
| Q |
130 |
ggtgtaataaccaaactagtggagatagaatatattctaagatagacagatttattgctaatactagttggctgcaaaagttcaccaatgcagtgggcga |
229 |
Q |
| |
|
|||| ||||||||| | || || |||| |||||||||||||| || ||| ||||||| |||| |||| | || | |||| |||| |||||| || |
|
|
| T |
40950969 |
ggtgcaataaccaagcaagcaatgacggaatctattctaagatagataggtttcttgctaacactaattggttacatagtttcagtaatgtagtgggtga |
40951068 |
T |
|
| Q |
230 |
agtgcttcctaaaggagtatctgatcactgtccaatatctatggatatgtcttgtcctgcttctcctaagaatactccttttagatttattaatgttttg |
329 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||| ||||| | ||| |||| |||| ||| ||||| || || |||||| ||||||||||| |
|
|
| T |
40951069 |
agtatatcctaaaggagtatctgatcactgtcatataagcttggatcttgcttatccttcttccactagaaataccccattcagatttcttaatgttttg |
40951168 |
T |
|
| Q |
330 |
actgaccatcatctttttcctgccttgatacaagagaaatggggtccgaatttgcatactaatctcttgaccaatatatggttcaagttgaaagccttga |
429 |
Q |
| |
|
||||| ||||| | ||||| |||||||||||| |||||||||| ||| | || |||||| || | |||||||||||||||||||| || |||| |
|
|
| T |
40951169 |
actgaacatcacatgtttccaagcttgatacaagaaaaatggggtcataatctacactctaatcagttaataaatatatggttcaagttgaaggctttga |
40951268 |
T |
|
| Q |
430 |
aaaaagatctaaaagagttaaattctacacattttcaaggtattgccaaaagagttgaagatgctagaa |
498 |
Q |
| |
|
| ||||| | |||||||||||| ||| | |||||||||||| |||||| | |||||||||| |||| |
|
|
| T |
40951269 |
agaaagagttgaaagagttaaatactaagtactttcaaggtattaccaaaaaaattgaagatgcgagaa |
40951337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 114 - 205
Target Start/End: Complemental strand, 27186912 - 27186821
Alignment:
| Q |
114 |
ggagattattatacttggtgtaataaccaaactagtggagatagaatatattctaagatagacagatttattgctaatactagttggctgca |
205 |
Q |
| |
|
||||||||||| | ||||||||||||||| | ||||| |||| |||||||||||||||||| || ||||||||||| |||| |||| |||| |
|
|
| T |
27186912 |
ggagattattacaaatggtgtaataaccaagcaagtggtgatataatatattctaagatagataggtttattgctaacactacttgggtgca |
27186821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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