View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9023_high_2 (Length: 754)
Name: NF9023_high_2
Description: NF9023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9023_high_2 |
 | |
|
| [»] scaffold0060 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 609; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 19 - 742
Target Start/End: Original strand, 8440948 - 8441673
Alignment:
| Q |
19 |
tgaaacacataggcactatcaattgcttaccatcacttatactcacgaatgttttccacattcc-aactttcaaattcaatctattgtctatttcacaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8440948 |
tgaaacacataggcactatcaattgcttaccatcacttatactcacgattgttttccacattcccaactttcaaattcaatctattgtctatttcacaat |
8441047 |
T |
|
| Q |
118 |
taacaaaatcaataaattttgatgcaattttttcatcttctggttgcatatttcaggaccgagcaacgaagaagatgattggtcagggtcgtgctcgcaa |
217 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8441048 |
taacaaaatcaataaattgtgatgcaattttttcatcttctggttgcatatttcaggaccggacaacgaagaagatgattggtcagggtcgtgctcgcaa |
8441147 |
T |
|
| Q |
218 |
tggaatcttctattcgaatgatgatatagtatcaaata-gcatgacaaggatcactattaccttagtcatccattaagttctattttcagttctaagcat |
316 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8441148 |
tggaatcttctatccgaatgatgatatagtatcaaataagcatgacaaggatcactattaccttagtcatccattaagttctattttcagttctaagcat |
8441247 |
T |
|
| Q |
317 |
tgtaataagtttgacctatggcattcacgcctaggtcatctatctacgtctcatttcaatttcattgttacaaatttaccataaattaatgcaaacaaag |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8441248 |
tgtaataagtttgacctatggcattcacgcctaagtcatccatctacgtctcatttcaatttcgttgttacaaatttaccataatttaatgcaaacaaag |
8441347 |
T |
|
| Q |
417 |
acttttcttatgaagtttgtccatgtgcgaaacaatcatgtttacctttttccgcaagaacaactaattcatctcattgttttgaactaattctcgttga |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8441348 |
acttttcttatgaagtttgtccatgtgcgaagcaatcacgtttacctttttcctcaagaacaactaattcatctcattgttttgaactaattctcgttga |
8441447 |
T |
|
| Q |
517 |
tatttggggtccattctccataccatctaataatttatcacactattttctaaccattgtcgatgattatacgtgatgtacttggttgtatctaacgcaa |
616 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
8441448 |
tatttggggtccattctacataccatctaataattgatcacactattttctaaccattgtcgatgattattcgcgatgtacttggttgtatctaacgcaa |
8441547 |
T |
|
| Q |
617 |
caataatctgaaacattcactatgttagttcannnnnnnaatcaaatcaatcgtcagtttaatattaacattgatcaaatcaactctagtgctaacagag |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||| |
|
|
| T |
8441548 |
caataatctgaaacattcactatgttagttcatttttttaatcaaatcaatcgtcagtttaatattaacactgatcaaatcaactccagtactaacagaa |
8441647 |
T |
|
| Q |
717 |
acacttttcttccttaaactccaaac |
742 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
8441648 |
acacttttcttccttaaactccaaac |
8441673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 19 - 703
Target Start/End: Complemental strand, 35251996 - 35251311
Alignment:
| Q |
19 |
tgaaacacataggcactatcaattgcttaccatcacttatactcacgaatgttttccacattccaactttcaaattcaatctattgtctatttcacaatt |
118 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| | || ||||||| |
|
|
| T |
35251996 |
tgaaacacataggcactatcaattgttcaccatcacttatactcacgaatgtttaccacgttccaactttcaaattcaatctattgtatgttacacaatt |
35251897 |
T |
|
| Q |
119 |
aacaaaatcaataaattttgatgcaattttttcatcttctggttgcatatttcaggaccgagcaacgaagaagatgattggtcagggtcgtgctcgcaat |
218 |
Q |
| |
|
|||| ||||| |||||| |||||||||||| ||||||||||||| |||||||||||||| ||||| ||| |||||||||||||||||| ||||||||||| |
|
|
| T |
35251896 |
aacagaatcactaaattgtgatgcaattttctcatcttctggtttcatatttcaggaccaagcaatgaaaaagatgattggtcagggtagtgctcgcaat |
35251797 |
T |
|
| Q |
219 |
ggaatcttctattcgaatgatgatatagtatcaaatag-catgacaaggatcactattaccttagtcatccattaagttctattttcagttctaagcatt |
317 |
Q |
| |
|
||| ||| |||| |||| | ||| |||| ||| ||| ||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
35251796 |
ggactctactatctgaatcaagatttagtctcagataatcatgacaaggatcactattgccttagtcatccattaagttccttttttagttctaagcatt |
35251697 |
T |
|
| Q |
318 |
gtaataagtttgacctatggcattcacgcctaggtcatctatctacgtctcatttcaatttcattgttacaaatttaccataaattaatgcaaacaaaga |
417 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||| ||||| ||||| ||||||||||||| ||| ||||| |||| ||||||||||||||||||| |
|
|
| T |
35251696 |
gtaataagtttaacctatggcatttacgcctaggtcatccatctatgtctcgtttcaatttcattcttaaaaattcaccagaaattaatgcaaacaaaga |
35251597 |
T |
|
| Q |
418 |
cttttcttatgaagtttgtccatgtgcgaaacaatcatgtttacctttttccgcaagaacaactaattcatctcattgttttgaactaattctcgttgat |
517 |
Q |
| |
|
||||||| ||||||||||||| |||| |||||| || ||||||| |||||| ||||||||||||||||||||||||||| |||||||||| ||| || |
|
|
| T |
35251596 |
tttttcttgtgaagtttgtccacgtgcaaaacaaccacgtttacccttttccttaagaacaactaattcatctcattgtttcgaactaattcatgttaat |
35251497 |
T |
|
| Q |
518 |
atttggggtccattctccataccatctaataatttatcacactattttctaaccattgtcgatgattatacgtgatgtacttggttgtatctaacgcaac |
617 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| |
|
|
| T |
35251496 |
atttggggtccattctccattccatctaataatggatcacgctattttctaaccattgtcgatgattattcgcgatgtacttggttgtatctaatgcaac |
35251397 |
T |
|
| Q |
618 |
aataatctgaaacattcactatgttagttcannnnnnnaatcaaatcaatcgtcagtttaatattaacattgatcaaatcaactct |
703 |
Q |
| |
|
| |||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| || |||||||||||||||||| |
|
|
| T |
35251396 |
ataaatcagaaacattcactatgttagttcatttttttaatcaaatcaatcgtcaatttaatatcaaaattgatcaaatcaactct |
35251311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 19 - 703
Target Start/End: Complemental strand, 987095 - 986410
Alignment:
| Q |
19 |
tgaaacacataggcactatcaattgcttaccatcacttatactcacgaatgttttccacattccaactttcaaattcaatctattgtctatttcacaatt |
118 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| || ||||||| |
|
|
| T |
987095 |
tgaaacacataggcactatcaattgttcaccatcacttatactcacgaatgtttatcacgttccaactttcaaattcaatctaatgtctgttacacaatt |
986996 |
T |
|
| Q |
119 |
aacaaaatcaataaattttgatgcaattttttcatcttctggttgcatatttcaggaccgagcaacgaagaagatgattggtcagggtcgtgctcgcaat |
218 |
Q |
| |
|
|||| ||||| | |||| |||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
986995 |
aacagaatcacttaattgtgatgcaattttctcatcttctggttgcgtatttcaggaccaagcaacgaagaagatgattggtcggggtagtgctcgcaac |
986896 |
T |
|
| Q |
219 |
ggaatcttctattcgaatgatgatatagtatcaaata-gcatgacaaggatcactattaccttagtcatccattaagttctattttcagttctaagcatt |
317 |
Q |
| |
|
||| ||| |||| |||| | ||| |||| ||||||| |||||||||||||||||||| ||||||||||||||||||||| | || ||||||||||||| |
|
|
| T |
986895 |
ggactctactatctgaatcaagatttagtctcaaataagcatgacaaggatcactattgccttagtcatccattaagttccttgtttagttctaagcatt |
986796 |
T |
|
| Q |
318 |
gtaataagtttgacctatggcattcacgcctaggtcatctatctacgtctcatttcaatttcattgttacaaatttaccataaattaatgcaaacaaaga |
417 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||| ||||| |||| ||||||||||||||||||| |
|
|
| T |
986795 |
gtaataagtttgacctatggcatttacgcctaggtcatccatctatgtctcgtttcaatttcattgttaaaaattcaccagaaattaatgcaaacaaaga |
986696 |
T |
|
| Q |
418 |
cttttcttatgaagtttgtccatgtgcgaaacaatcatgtttacctttttccgcaagaacaactaattcatctcattgttttgaactaattctcgttgat |
517 |
Q |
| |
|
||||||| ||||||||||||| |||| |||||| || ||||||| |||||| ||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
986695 |
tttttcttgtgaagtttgtccacgtgcaaaacaaccacgtttacccttttccttaagaacaactaattcatctcattgtttcgaactaattcatgttgat |
986596 |
T |
|
| Q |
518 |
atttggggtccattctccataccatctaataatttatcacactattttctaaccattgtcgatgattatacgtgatgtacttggttgtatctaacgcaac |
617 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| |
|
|
| T |
986595 |
atttggggtccattctccattccatctaataatggatcacgctattttctaaccattgtcgatgattactcgcgatgtacttggttgtatctaatgcaac |
986496 |
T |
|
| Q |
618 |
aataatctgaaacattcactatgttagttcannnnnnnaatcaaatcaatcgtcagtttaatattaacattgatcaaatcaactct |
703 |
Q |
| |
|
| |||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| || |||||||||||||||||| |
|
|
| T |
986495 |
ataaatcagaaacattcactatgttagttcatttttttaatcaaatcaatcgtcaatttaatatcaaaattgatcaaatcaactct |
986410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 19 - 703
Target Start/End: Original strand, 1997928 - 1998613
Alignment:
| Q |
19 |
tgaaacacataggcactatcaattgcttaccatcacttatactcacgaatgttttccacattccaactttcaaattcaatctattgtctatttcacaatt |
118 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| || ||||||| |
|
|
| T |
1997928 |
tgaaacacataggcactatcaattgttcaccatcacttatactcacgaatgtttatcacgttccaactttcaaattcaatctaatgtctgttacacaatt |
1998027 |
T |
|
| Q |
119 |
aacaaaatcaataaattttgatgcaattttttcatcttctggttgcatatttcaggaccgagcaacgaagaagatgattggtcagggtcgtgctcgcaat |
218 |
Q |
| |
|
|||| ||||| | |||| |||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
1998028 |
aacagaatcacttaattgtgatgcaattttctcatcttctggttgcgtatttcaggaccaagcaacgaagaagatgattggtcggggtagtgctcgcaac |
1998127 |
T |
|
| Q |
219 |
ggaatcttctattcgaatgatgatatagtatcaaata-gcatgacaaggatcactattaccttagtcatccattaagttctattttcagttctaagcatt |
317 |
Q |
| |
|
| | ||| |||| |||| | ||| |||| ||||||| |||||||||||||||||||| ||||||||||||||||||||| | || ||||||||||||| |
|
|
| T |
1998128 |
gaactctactatctgaatcaagatttagtctcaaataagcatgacaaggatcactattgccttagtcatccattaagttccttgtttagttctaagcatt |
1998227 |
T |
|
| Q |
318 |
gtaataagtttgacctatggcattcacgcctaggtcatctatctacgtctcatttcaatttcattgttacaaatttaccataaattaatgcaaacaaaga |
417 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||| ||||| |||| ||||||||||||||||||| |
|
|
| T |
1998228 |
gtaataagtttgacctatggcatttacgcctaggtcatccatctatgtctcgtttcaatttcattgttaaaaattcaccagaaattaatgcaaacaaaga |
1998327 |
T |
|
| Q |
418 |
cttttcttatgaagtttgtccatgtgcgaaacaatcatgtttacctttttccgcaagaacaactaattcatctcattgttttgaactaattctcgttgat |
517 |
Q |
| |
|
||||||| ||||||||||||| |||| |||||| || ||||||| |||||| ||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
1998328 |
tttttcttgtgaagtttgtccacgtgcaaaacaaccacgtttacccttttccttaagaacaactaattcatctcattgtttcgaactaattcatgttgat |
1998427 |
T |
|
| Q |
518 |
atttggggtccattctccataccatctaataatttatcacactattttctaaccattgtcgatgattatacgtgatgtacttggttgtatctaacgcaac |
617 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| |
|
|
| T |
1998428 |
atttggggtccattctccattccatctaataatggatcacgctattttctaaccattgtcgatgattactcgcgatgtacttggttgtatctaatgcaac |
1998527 |
T |
|
| Q |
618 |
aataatctgaaacattcactatgttagttcannnnnnnaatcaaatcaatcgtcagtttaatattaacattgatcaaatcaactct |
703 |
Q |
| |
|
| |||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| || |||||||||||||||||| |
|
|
| T |
1998528 |
ataaatcagaaacattcactatgttagttcatttttttaatcaaatcaatcgtcaatttaatatcaaaattgatcaaatcaactct |
1998613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 118; Significance: 8e-60; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 596 - 742
Target Start/End: Complemental strand, 70426 - 70280
Alignment:
| Q |
596 |
acttggttgtatctaacgcaacaataatctgaaacattcactatgttagttcannnnnnnaatcaaatcaatcgtcagtttaatattaacattgatcaaa |
695 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
70426 |
acttggttgtatctaacgcaacaataatctgaaacattcactatgttagttcatttttttaatcaaatcaatcgtcagtttaatattaacattgatcaaa |
70327 |
T |
|
| Q |
696 |
tcaactctagtgctaacagagacacttttcttccttaaactccaaac |
742 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
70326 |
tcaactctagtactaacagagaaacttttcttccttaaactccaaac |
70280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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