View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9023_high_8 (Length: 380)

Name: NF9023_high_8
Description: NF9023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9023_high_8
NF9023_high_8
[»] chr6 (15 HSPs)
chr6 (1-362)||(2453903-2454264)
chr6 (56-343)||(9826787-9827072)
chr6 (53-327)||(11846306-11846578)
chr6 (57-362)||(23300456-23300751)
chr6 (55-362)||(7176342-7176634)
chr6 (39-269)||(11971534-11971761)
chr6 (232-362)||(23301442-23301572)
chr6 (139-338)||(32613784-32613977)
chr6 (105-330)||(23585916-23586143)
chr6 (57-349)||(26879823-26880108)
chr6 (39-119)||(26186541-26186618)
chr6 (183-290)||(26186657-26186764)
chr6 (103-218)||(1208733-1208848)
chr6 (95-170)||(20722497-20722572)
chr6 (218-271)||(5076251-5076304)
[»] chr2 (23 HSPs)
chr2 (57-363)||(5526247-5526555)
chr2 (17-343)||(37630380-37630698)
chr2 (63-343)||(29109025-29109298)
chr2 (112-340)||(27866665-27866889)
chr2 (53-294)||(33036890-33037116)
chr2 (197-339)||(3919845-3919987)
chr2 (95-310)||(38607049-38607267)
chr2 (39-190)||(22848042-22848190)
chr2 (53-280)||(30906688-30906930)
chr2 (39-294)||(3689943-3690179)
chr2 (39-165)||(10722023-10722148)
chr2 (63-294)||(44018806-44019029)
chr2 (177-301)||(4240751-4240876)
chr2 (206-309)||(7772060-7772163)
chr2 (228-339)||(35954766-35954877)
chr2 (234-340)||(4638207-4638313)
chr2 (95-165)||(28199806-28199876)
chr2 (97-201)||(30340563-30340665)
chr2 (234-362)||(31111444-31111572)
chr2 (226-306)||(35961755-35961835)
chr2 (53-170)||(33221513-33221632)
chr2 (241-343)||(12893947-12894049)
chr2 (234-326)||(13852296-13852388)
[»] chr3 (18 HSPs)
chr3 (55-339)||(28550497-28550779)
chr3 (53-362)||(44471048-44471355)
chr3 (1-296)||(54246529-54246827)
chr3 (53-338)||(44681843-44682129)
chr3 (2-338)||(779295-779629)
chr3 (53-362)||(26757624-26757938)
chr3 (53-276)||(23659501-23659724)
chr3 (6-264)||(33231310-33231567)
chr3 (95-338)||(30554427-30554670)
chr3 (53-311)||(44285642-44285881)
chr3 (110-294)||(26918347-26918529)
chr3 (96-343)||(46892654-46892883)
chr3 (53-343)||(11503168-11503462)
chr3 (183-330)||(13870262-13870408)
chr3 (167-342)||(27524068-27524243)
chr3 (104-213)||(35847303-35847414)
chr3 (229-301)||(12937750-12937822)
chr3 (39-89)||(46892877-46892926)
[»] chr8 (14 HSPs)
chr8 (3-339)||(32321853-32322188)
chr8 (73-340)||(3767526-3767789)
chr8 (39-362)||(16570697-16571016)
chr8 (53-294)||(9040511-9040750)
chr8 (61-311)||(9505098-9505358)
chr8 (53-340)||(25455980-25456265)
chr8 (53-271)||(3555266-3555482)
chr8 (234-311)||(34760833-34760910)
chr8 (53-290)||(25808133-25808368)
chr8 (73-293)||(37379904-37380119)
chr8 (53-144)||(25343960-25344049)
chr8 (216-343)||(40434962-40435089)
chr8 (39-149)||(20860215-20860322)
chr8 (152-213)||(20860351-20860412)
[»] chr5 (10 HSPs)
chr5 (58-339)||(1498047-1498326)
chr5 (95-343)||(7239167-7239420)
chr5 (95-343)||(7244343-7244596)
chr5 (39-295)||(17770310-17770563)
chr5 (95-269)||(39786072-39786248)
chr5 (53-118)||(20665643-20665706)
chr5 (207-343)||(29126133-29126269)
chr5 (96-173)||(31896103-31896180)
chr5 (215-311)||(41092009-41092105)
chr5 (39-87)||(20665543-20665590)
[»] chr4 (11 HSPs)
chr4 (42-343)||(53392983-53393291)
chr4 (56-342)||(8605985-8606267)
chr4 (53-311)||(42141330-42141575)
chr4 (39-231)||(19681904-19682093)
chr4 (55-160)||(13207239-13207343)
chr4 (96-311)||(24466204-24466419)
chr4 (134-213)||(39838950-39839029)
chr4 (101-173)||(23107801-23107873)
chr4 (53-112)||(38388184-38388241)
chr4 (162-269)||(8056836-8056942)
chr4 (255-295)||(38264847-38264887)
[»] chr7 (27 HSPs)
chr7 (102-343)||(48070664-48070905)
chr7 (5-311)||(25545006-25545311)
chr7 (53-342)||(31136196-31136477)
chr7 (125-311)||(44523590-44523775)
chr7 (57-309)||(12470084-12470325)
chr7 (5-311)||(12471536-12471838)
chr7 (97-311)||(12470899-12471113)
chr7 (7-251)||(12012739-12012984)
chr7 (74-269)||(35738005-35738195)
chr7 (73-341)||(3996813-3997076)
chr7 (43-269)||(2197509-2197732)
chr7 (95-194)||(2501939-2502038)
chr7 (210-301)||(21378567-21378657)
chr7 (95-170)||(49124439-49124514)
chr7 (98-159)||(2923122-2923183)
chr7 (63-220)||(32971397-32971558)
chr7 (96-280)||(46993361-46993545)
chr7 (53-343)||(46265156-46265439)
chr7 (224-296)||(27226920-27226992)
chr7 (224-330)||(22331994-22332100)
chr7 (53-117)||(39571648-39571710)
chr7 (234-342)||(7352396-7352504)
chr7 (232-311)||(2923035-2923114)
chr7 (303-362)||(12013027-12013086)
chr7 (114-252)||(19602218-19602356)
chr7 (178-272)||(45595452-45595546)
chr7 (242-326)||(39695149-39695233)
[»] chr1 (11 HSPs)
chr1 (53-330)||(11911648-11911921)
chr1 (39-269)||(32678292-32678518)
chr1 (40-306)||(17530691-17530954)
chr1 (215-362)||(512984-513131)
chr1 (226-330)||(27320483-27320587)
chr1 (208-343)||(8414579-8414714)
chr1 (39-157)||(8414385-8414499)
chr1 (234-339)||(25785805-25785910)
chr1 (224-289)||(44581820-44581885)
chr1 (178-341)||(4407741-4407904)
chr1 (63-135)||(4919659-4919734)
[»] scaffold0564 (1 HSPs)
scaffold0564 (53-311)||(6397-6640)
[»] scaffold0070 (2 HSPs)
scaffold0070 (53-311)||(13828-14084)
scaffold0070 (53-170)||(33946-34061)
[»] scaffold0002 (1 HSPs)
scaffold0002 (4-221)||(344152-344363)
[»] scaffold0590 (1 HSPs)
scaffold0590 (39-290)||(8270-8513)
[»] scaffold0879 (1 HSPs)
scaffold0879 (96-311)||(469-684)
[»] scaffold1194 (1 HSPs)
scaffold1194 (6-131)||(2347-2471)
[»] scaffold1335 (1 HSPs)
scaffold1335 (104-213)||(849-960)
[»] scaffold0565 (2 HSPs)
scaffold0565 (236-326)||(1873-1963)
scaffold0565 (95-144)||(1735-1784)


Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 2453903 - 2454264
Alignment:
Q  1 acggcggtgaggaacaatggggtatgtgtgacttgcggagtgttctttgttcagtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgg 100  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2453903 acggcggtgaggaacaatgggttatgtgtgacttgcggaatgttctttgttcagtagaaacgaaatagagtgtgagtgatgagatgagatatgatgatgg 2454002  T
Q  101 gagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatggggagt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  2454003 gagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttattcataggtgtttgtgaggagcgataagattactaaaatggggagt 2454102  T
Q  201 gaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgattt 300  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  2454103 gaggctagcatcgattcggtttgttggttctttggatctcaaaattaaaaaccaagaatcgaaccaaactatatcagtttaggttggttcggttcgattt 2454202  T
Q  301 ttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttcgatttc 362  Q
    | ||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||    
T  2454203 tgaaccgaacctaataaagtcggatactttctcggtttgattccatttgaattttcaatttc 2454264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 56 - 343
Target Start/End: Complemental strand, 9827072 - 9826787
Alignment:
Q  56 agaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaa 155  Q
    |||||||||||||| | ||||||||||||||||||  | |||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||    
T  9827072 agaaacgaaatagactatgagtgatgagatgagat--gatgatgggagaaagtgaatgaattaaggagtattttatgttggactttaatattgagcttaa 9826975  T
Q  156 tcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaa 255  Q
    ||||| | || ||||||||| ||||| |||||||||| ||| ||||||| || ||||  || ||||  |||||||||||||| ||||||||||||||  |    
T  9826974 tcataagcgtgtgtgaggagggataatattactaaaacgggaagtgaggttaacatcagtttggttcatcggttctttggatttcaaaattaaaaaccga 9826875  T
Q  256 gaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaa-gtcggatactttctcggtttggttc 343  Q
    ||| |||||||||||| ||| ||||| |||||||||||||| |||| ||||||||| |||||| |||||||||||| ||||||||||||    
T  9826874 gaatcgaaccaaactagatcggtttatgttggttcggttcggttttcaaccgaaccaaataaaggtcggatacttt-tcggtttggttc 9826787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 53 - 327
Target Start/End: Complemental strand, 11846578 - 11846306
Alignment:
Q  53 agtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagct 152  Q
    |||||||||||||||||  ||||| |||||||||||||  | |||||| |||||||| |||||||||| | |||| |||||||||||||||| |||||||    
T  11846578 agtagaaacgaaatagaccgtgagcgatgagatgagat--gatgatggaagaaagtggatgaattaaggagtattgtatgttggactttaattttgagct 11846481  T
Q  153 taatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaac 252  Q
    |||||||| |||| ||||||||| ||||| |||||||||||||||||||||| ||||||| ||| ||||  | ||||| |||||||||||||||||||||    
T  11846480 taatcataagtgtgtgtgaggagggataatattactaaaatggggagtgaggatagcatcaatttggttcattggttcattggatctcaaaattaaaaac 11846381  T
Q  253 taagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatac 327  Q
      ||||||||||||||||| ||| ||||| |||||||| ||||| |||| |||| |||| || || |||||||||    
T  11846380 cgagaaccgaaccaaactagatcggtttaagttggttcagttcggttttgaaccaaaccaaacaaggtcggatac 11846306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 57 - 362
Target Start/End: Complemental strand, 23300751 - 23300456
Alignment:
Q  57 gaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaat 156  Q
    ||||||||||||| ||||||||||||||||||||  | |||||||| |||||||| |||||||| | ||||||||||||||||||||| ||||| |||||    
T  23300751 gaaacgaaatagaatgtgagtgatgagatgagat--gatgatgggaaaaagtgaaagaattaaggagtattttatgttggactttaattttgagtttaat 23300654  T
Q  157 cataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaag 256  Q
    |||| |||| | ||||||| ||||| ||||||||||||| |||||| | |||||||| |||||||||        |||||||||||||||||||||  ||    
T  23300653 cataagtgtgtatgaggagggataatattactaaaatggagagtgaagttagcatcggttcggtttg--------ttggatctcaaaattaaaaaccgag 23300562  T
Q  257 aaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttc 356  Q
    |||||||| |||||| |||||||||||||||||||||||  |||| ||||||||| || || ||||  | |||| ||||||||||||  ||||| |||||    
T  23300561 aaccgaactaaactagatcagtttaggttggttcggttcagttttgaaccgaaccaaacaaggtcgatttctttttcggtttggttcggtttgaattttc 23300462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 55 - 362
Target Start/End: Original strand, 7176342 - 7176634
Alignment:
Q  55 tagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagctta 154  Q
    |||||||||||| || |||||||||||||||||       | ||| |||||| | ||||||||||| ||||||||||||||||||||| | |||||||||    
T  7176342 tagaaacgaaatggactgtgagtgatgagatga-------ttatgagagaaaataaatgaattaaggaatattttatgttggactttagttttgagctta 7176434  T
Q  155 atcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaacta 254  Q
    |||||| |||||||||||||| ||||| |||||||||||||||||||||| |||||||        |  ||||||| |||||||||||||| |||||||     
T  7176435 atcataagtgtttgtgaggagagataatattactaaaatggggagtgaggttagcatc--------tgttcggttcattggatctcaaaataaaaaactg 7176526  T
Q  255 agaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagttt 354  Q
    | ||||||||||||||| ||| ||||||||||||||||||||||||| |||| |||| || || || ||||||||| |||| |||||||  || ||||||    
T  7176527 ataaccgaaccaaactagatcggtttaggttggttcggttcgattttgaaccaaaccaaacaaggttggatactttttcgggttggttcggttagagttt 7176626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 39 - 269
Target Start/End: Complemental strand, 11971761 - 11971534
Alignment:
Q  39 agtgttctttgttcagtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggac 138  Q
    |||||||||| || |||||||| || |||||  ||||| |||||||||||||  | |||||| |||||||| |||||||||| | |||||||||||||||    
T  11971761 agtgttctttttt-agtagaaatgatatagaccgtgagggatgagatgagat--gatgatggaagaaagtggatgaattaaggagtattttatgttggac 11971665  T
Q  139 tttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatc 238  Q
    |||||| ||||| ||||||||| |||| ||||||||| ||||| |||||||||||||||||||||| |||||||  || ||||  | | ||| |||||||    
T  11971664 tttaattttgagattaatcataagtgtgtgtgaggagggataatattactaaaatggggagtgaggatagcatcagtttggttcattgattcattggatc 11971565  T
Q  239 tcaaaattaaaaactaagaaccgaaccaaac 269  Q
    || |||||||||||  |||||||||||||||    
T  11971564 tctaaattaaaaaccgagaaccgaaccaaac 11971534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 232 - 362
Target Start/End: Complemental strand, 23301572 - 23301442
Alignment:
Q  232 ttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttc 331  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| || || |||| ||  |||     
T  23301572 ttggatctcaaaattaaaaactgagaaccgaaccaaactagatcagtttaggttggttcggttcggttttgaaccgaaccaaacaaggtcgaattatttt 23301473  T
Q  332 tcggtttggttccatttgagttttcgatttc 362  Q
    ||||||||||||  ||||| |||||| ||||    
T  23301472 tcggtttggttcagtttgaattttcggtttc 23301442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 139 - 338
Target Start/End: Original strand, 32613784 - 32613977
Alignment:
Q  139 tttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatc 238  Q
    |||||| ||||||||||||||| |||| ||||||||   |||| |||| ||||||||| | ||||| |||||||| || ||||  || |||||||||| |    
T  32613784 tttaattttgagcttaatcataagtgtgtgtgaggatgaataatattattaaaatgggaactgaggttagcatcggtttggttcatcagttctttggaac 32613883  T
Q  239 tcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggttt 338  Q
    |      ||||||| || ||  ||||||||||| ||| |||||||||||||||||||| |||| |||| | || || |||||| |||||||| |||||||    
T  32613884 t------taaaaaccaaaaatggaaccaaactagatcggtttaggttggttcggttcggttttgaaccaagccaaacaaagtcagatactttttcggttt 32613977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 105 - 330
Target Start/End: Complemental strand, 23586143 - 23585916
Alignment:
Q  105 aagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgag--gagcgataaaattactaaaatggggagtga 202  Q
    |||||||||||| ||| | ||||||| ||||||||||||| || ||||| |||||  |||| |||| |  ||   || | |||| |||||||| ||||||    
T  23586143 aagtgaatgaatgaaggagtattttacgttggactttaatttttagcttcatcatcagtgtatgtgtgatgaaaaatgatattaataaaatggagagtga 23586044  T
Q  203 ggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgattttt 302  Q
    | |||| |||| |||  ||| ||  || |||| ||||||||||||||| |  |||||| |||||||||||||| ||||| ||| ||| |||||| ||||     
T  23586043 gactagtatcggttcaatttatcaattttttgaatctcaaaattaaaatccgagaaccaaaccaaactatatcggtttacgttagtttggttcggttttg 23585944  T
Q  303 aaccgaacctaataaagtcggatacttt 330  Q
    ||||||||  || || ||||||||||||    
T  23585943 aaccgaacaaaacaaggtcggatacttt 23585916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 349
Target Start/End: Complemental strand, 26880108 - 26879823
Alignment:
Q  57 gaaacgaaatagagtgtgagtgatgagatgagat-atgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaa 155  Q
    |||| |||||||||| | |||||| ||||||| | ||| ||||||||||||||||||| |||||  | ||||||||||||  ||||||| |||  | |||    
T  26880108 gaaatgaaatagagtctaagtgatcagatgagttgatgatgatgggagaaagtgaatggattaatgagtattttatgttgagctttaattttggacctaa 26880009  T
Q  156 tcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaa 255  Q
            || ||||||||| ||||| |||| | ||||| ||| || || || ||||| |||||||  ||||||| ||| |||||| ||| ||||||| |    
T  26880008 --------gtatgtgaggagggataatattagtgaaatgaggaatggggttaccatcggttcggttcatcggttccttgaatctcacaatgaaaaactga 26879917  T
Q  256 gaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttg 349  Q
    ||||  |||||| | |  ||||||||  ||||||||||| |||||| ||||||| |  | || ||||  |||||| |||||||||||| |||||    
T  26879916 gaactcaaccaaccaaggtcagtttatattggttcggtttgattttgaaccgaagcagaaaaggtcgattactttttcggtttggttcaatttg 26879823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 26186541 - 26186618
Alignment:
Q  39 agtgttctttgttcagtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaa 119  Q
    |||||||||| || ||||||||| ||||||||||||||||||||||| ||  ||| ||||| |||||||||||||||||||    
T  26186541 agtgttctttttt-agtagaaacaaaatagagtgtgagtgatgagattag--atgatgatgagagaaagtgaatgaattaa 26186618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 290
Target Start/End: Original strand, 26186657 - 26186764
Alignment:
Q  183 attactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttag 282  Q
    |||||||||||||||||  ||| ||| |||| ||||  |  |||||||||||||| | ||||||||||||  |||||| |||||||||| ||| |||||     
T  26186657 attactaaaatggggagcaaggttagaatcggttcgactcatcggttctttggattttaaaattaaaaaccgagaaccaaaccaaactagatcggtttaa 26186756  T
Q  283 gttggttc 290  Q
    ||||||||    
T  26186757 gttggttc 26186764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 218
Target Start/End: Complemental strand, 1208848 - 1208733
Alignment:
Q  103 gaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatggggagtga 202  Q
    |||||||||||||||||| | ||||||||| || |||||||| ||| || |||| ||| |||| ||||| ||| ||||| |||| |||||   ||||||     
T  1208848 gaaagtgaatgaattaagtagtattttatgctgaactttaattttgggcctaatgataagtgtgtgtgaagagggataacattagtaaaacaaggagtgg 1208749  T
Q  203 ggctagcatcgattcg 218  Q
    || ||||||| |||||    
T  1208748 ggttagcatcaattcg 1208733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 170
Target Start/End: Complemental strand, 20722572 - 20722497
Alignment:
Q  95 tgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtg 170  Q
    |||||| |||||||||||| |||||||| || |||||||||| ||||||| |||  | |||||||| |||| ||||    
T  20722572 tgatggcagaaagtgaatgcattaagaagtaatttatgttgggctttaattttggccctaatcataagtgtgtgtg 20722497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 5076304 - 5076251
Alignment:
Q  218 ggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaacta 271  Q
    ||||| |||||||||||||| ||||||| ||||||  ||||| |||||||||||    
T  5076304 ggtttatcggttctttggatttcaaaataaaaaaccgagaacggaaccaaacta 5076251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 57 - 363
Target Start/End: Complemental strand, 5526555 - 5526247
Alignment:
Q  57 gaaacgaaatagagtgtgagtgatgagatgagat---atgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagctt 153  Q
    |||||||||||||| |||||||||||||||||||   ||| |||||  ||||||||||||||||||| | ||||||||||||||||||||| ||||| ||    
T  5526555 gaaacgaaatagagcgtgagtgatgagatgagatgtgatgatgatgacagaaagtgaatgaattaaggagtattttatgttggactttaattttgagttt 5526456  T
Q  154 aatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaact 253  Q
    ||||||| |||| ||| ||||| ||||| | |||||||||||||||||||  |||||||| |||||||  || |||||||||||||||||||||||||||    
T  5526455 aatcataagtgtgtgtaaggagggataataatactaaaatggggagtgagattagcatcggttcggttcatctgttctttggatctcaaaattaaaaact 5526356  T
Q  254 aagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagtt 353  Q
     ||||||||||||||||| ||| |||||||||||||| ||||  |||| ||||||||  || || ||||||||| || |||||||||||  |||||  ||    
T  5526355 gagaaccgaaccaaactagatcggtttaggttggttc-gttcagttttgaaccgaacaaaacaaggtcggatacgttttcggtttggtttaatttggatt 5526257  T
Q  354 ttcgatttct 363  Q
    ||||||||||    
T  5526256 ttcgatttct 5526247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 17 - 343
Target Start/End: Complemental strand, 37630698 - 37630380
Alignment:
Q  17 atggggtatgtgtgacttgcgg--agtgttctttgttcagtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatga 114  Q
    ||||| ||||||||||| | ||  |||||||||| || ||||||||| ||||||| | |||||||||||| ||       ||||| ||||||||||||||    
T  37630698 atgggttatgtgtgactggtggctagtgttctttttt-agtagaaacaaaatagactttgagtgatgagacga-------tgatgagagaaagtgaatga 37630607  T
Q  115 attaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcga 214  Q
    |||||||| ||||| ||||||||||||||| ||||||||||||||| ||||  |||||||| ||||| ||||||||| |||||||||| | ||||||| |    
T  37630606 attaagaagtatttgatgttggactttaattttgagcttaatcataagtgt--gtgaggagggataatattactaaagtggggagtgatgttagcatcca 37630509  T
Q  215 ttcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaa 314  Q
    |||||||   |||||| |||||||||||||||||||||  ||||| ||||||||||| ||||||||||||||||| || |||||||| |||| |||| |     
T  37630508 ttcggttcaccggttcattggatctcaaaattaaaaaccgagaactgaaccaaactagatcagtttaggttggtttggatcgattttgaaccaaaccaag 37630409  T
Q  315 taaagtcggatactttctcggtttggttc 343  Q
     || ||  |||||||| ||||||||||||    
T  37630408 caaggttcgatactttttcggtttggttc 37630380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 63 - 343
Target Start/End: Original strand, 29109025 - 29109298
Alignment:
Q  63 aaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcatagg 162  Q
    ||||||||||||| |||||||||||       |||| ||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||| |||      
T  29109025 aaatagagtgtgactgatgagatga-------tgataggagaaagtgaatgaattaaggagtattttatgttggactttaattttgagcttaattataat 29109117  T
Q  163 tgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccga 262  Q
    ||| ||||||| | ||||| |||||||||||||| ||  ||| ||||||||||| ||||  |||||||||||||||||||||||||||||  |||||| |    
T  29109118 tgtgtgtgaggggggataatattactaaaatgggaaggaaggttagcatcgatttggttcatcggttctttggatctcaaaattaaaaaccgagaaccaa 29109217  T
Q  263 accaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttc 343  Q
    ||||||||| ||  |||||||||| ||||||||| |||| ||| ||||| || || |||||||| ||| || |||||||||    
T  29109218 accaaactagattggtttaggttgcttcggttcggttttgaactgaaccaaacaaggtcggataatttttcagtttggttc 29109298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 112 - 340
Target Start/End: Complemental strand, 27866889 - 27866665
Alignment:
Q  112 tgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcat 211  Q
    ||||||||| | ||||||||||||||||||||| ||||| ||||||||| ||||  |||||||| ||||| ||||||||||||| |||||||| || |||    
T  27866889 tgaattaaggagtattttatgttggactttaattttgagattaatcataagtgt--gtgaggagtgataatattactaaaatggtgagtgagg-taacat 27866793  T
Q  212 cgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacc 311  Q
    || ||| |||  ||||||||| |||||||||||||||||||  |||| |||||||||||  |||| |||| |||||||| ||||| |||| |||||||||    
T  27866792 cggttcagttcatcggttcttgggatctcaaaattaaaaaccgagaatcgaaccaaactcgatcaatttaagttggttcagttcggttttgaaccgaacc 27866693  T
Q  312 taataaagtcggatactttctcggtttgg 340  Q
     |  || |||||||||||| |||||||||    
T  27866692 aagcaaggtcggatacttt-tcggtttgg 27866665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 53 - 294
Target Start/End: Original strand, 33036890 - 33037116
Alignment:
Q  53 agtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagct 152  Q
    ||||||||| ||||| ||||| |||||||||||||       |||||||||||||  ||||||||| | |||||| |||||||  ||||||| |||||||    
T  33036890 agtagaaacaaaataaagtgtaagtgatgagatga-------tgatgggagaaagcaaatgaattatggaatattatatgttgtcctttaattttgagct 33036982  T
Q  153 taatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaac 252  Q
    ||||||||| ||| ||||||||| ||||| ||||||||||||| |||||| | ||||||||||        || |||||||| || ||||| |||||||     
T  33036983 taatcatagatgtgtgtgaggagggataatattactaaaatggagagtgaagttagcatcgat--------tcagttctttgaatttcaaatttaaaaat 33037074  T
Q  253 taagaaccgaaccaaactatatcagtttaggttggttcggtt 294  Q
     |||||||||||||||||| ||| ||||| ||||||||||||    
T  33037075 caagaaccgaaccaaactaaatcggtttaagttggttcggtt 33037116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 197 - 339
Target Start/End: Original strand, 3919845 - 3919987
Alignment:
Q  197 gagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcg 296  Q
    |||||| | |||||||| |||||||  |||||||||| ||||||||||||||||| |||||||| |||||||||| ||| |||||| |||||||||||||    
T  3919845 gagtgaagttagcatcggttcggttcatcggttctttagatctcaaaattaaaaattaagaaccaaaccaaactagatcggtttagtttggttcggttcg 3919944  T
Q  297 atttttaaccgaacctaataaagtcggatactttctcggtttg 339  Q
     |||| |||| |||| || ||||||| || |||| ||||||||    
T  3919945 gttttgaaccaaaccaaacaaagtcgaatgctttttcggtttg 3919987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 95 - 310
Target Start/End: Complemental strand, 38607267 - 38607049
Alignment:
Q  95 tgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttg----tgaggagcgataaaattactaa 190  Q
    ||||| || ||| |||||| |||||  | ||||||||||||||||| ||| ||| || |||||||| |||||||    ||||||| ||||| |||| |||    
T  38607267 tgatgagataaaatgaatggattaaatagtattttatgttggactt-aattttgggcctaatcataagtgtttgcgtgtgaggagggataacattagtaa 38607169  T
Q  191 aatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttc 290  Q
    ||||| ||||| || ||||||| | ||||||  |||||| | ||||||||||||| |||||| |||||||||||||||| |  ||||||||| |||||||    
T  38607168 aatggcgagtgtggttagcatcaaatcggttcatcggttttatggatctcaaaatgaaaaaccaagaaccgaaccaaacaaggtcagtttagattggttc 38607069  T
Q  291 ggttcgatttttaaccgaac 310  Q
    |||||| |||| || |||||    
T  38607068 ggttcggttttgaatcgaac 38607049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 190
Target Start/End: Original strand, 22848042 - 22848190
Alignment:
Q  39 agtgttctttgttcagtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggac 138  Q
    |||||||||| || |||| |||| ||||| ||||||||||||||||||||||  | |||||||||||||||||||||| | | | ||||||||||||| |    
T  22848042 agtgttcttt-ttaagtataaacaaaataaagtgtgagtgatgagatgagat--gatgatgggagaaagtgaatgaataatggagtattttatgttggcc 22848138  T
Q  139 tttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaa 190  Q
    |||||  ||||||||||||||| |||| ||||||||| ||||| ||| ||||    
T  22848139 tttaactttgagcttaatcataagtgtgtgtgaggagggataatatttctaa 22848190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 53 - 280
Target Start/End: Original strand, 30906688 - 30906930
Alignment:
Q  53 agtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagct 152  Q
    |||||||||||||||||||||||||||||| ||| |||  | ||||||  |||||||||||||||||| | |||||||||||| |||||||| |||||||    
T  30906688 agtagaaacgaaatagagtgtgagtgatgaaatgggat--gatgatggacgaaagtgaatgaattaaggagtattttatgttgaactttaattttgagct 30906785  T
Q  153 taatcataggtgtttgt------------------gaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttg 234  Q
    ||||||||  ||| |||                  |||||  ||||| |||||||||||||| ||||||| || ||||||||| |||| | |||||||||    
T  30906786 taatcataactgtgtgtgtgtgtgtgagatagagagaggaaggataatattactaaaatgggaagtgaggttaccatcgattcagtttattggttctttg 30906885  T
Q  235 gatctcaaaattaaaaactaagaaccgaaccaaactatatcagttt 280  Q
    |||||||||||| ||| |  ||||||||| ||||||||||| ||||    
T  30906886 gatctcaaaatt-aaatccgagaaccgaatcaaactatatcggttt 30906930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 39 - 294
Target Start/End: Original strand, 3689943 - 3690179
Alignment:
Q  39 agtgttctttgttcagtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggac 138  Q
    |||||||||| || |||| |||||||||| | | ||||||||||||||||||  | ||||| |||||||||||||||    | | ||||||| |||||||    
T  3689943 agtgttctttttt-agtataaacgaaata-actttgagtgatgagatgagat--gatgatgagagaaagtgaatgaa----ggagtattttacgttggac 3690034  T
Q  139 tttaatcttgagcttaatcataggtgtttgt--gaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttgga 236  Q
    |||||| ||||||||||||||| |||| |||  |||||| ||||| |||||||||||||||||| ||| |||||             ||||||| || ||    
T  3690035 tttaattttgagcttaatcataagtgtgtgtgcgaggagggataatattactaaaatggggagtaaggttagca-------------tcggttcattaga 3690121  T
Q  237 tctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggtt 294  Q
    |||||||||||||||   ||||||||||||||||| ||| ||||||||||||| ||||    
T  3690122 tctcaaaattaaaaatcgagaaccgaaccaaactagatcggtttaggttggtttggtt 3690179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 39 - 165
Target Start/End: Complemental strand, 10722148 - 10722023
Alignment:
Q  39 agtgttctttgttcagtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaat--gaattaagaaatattttatgttgg 136  Q
    |||||||||| || |||||||||||||||||  |||||| ||||||||||||  | ||||||||||||||||||  |||||||| | |||||||||||||    
T  10722148 agtgttctttttt-agtagaaacgaaatagaccgtgagtaatgagatgagat--gatgatgggagaaagtgaatatgaattaaggagtattttatgttgg 10722052  T
Q  137 actttaatcttgagcttaatcataggtgt 165  Q
    |||||||| ||||||||||||||| ||||    
T  10722051 actttaattttgagcttaatcataagtgt 10722023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 63 - 294
Target Start/End: Original strand, 44018806 - 44019029
Alignment:
Q  63 aaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcatagg 162  Q
    ||||| ||||||||||||||||||| ||       |||||||||| ||| |||||||||||||||||||||||||||||||| |||| |||| ||||| |    
T  44018806 aaatacagtgtgagtgatgagatgatat-------tgggagaaagcgaacgaattaagaaatattttatgttggactttaattttgaacttattcataag 44018898  T
Q  163 tgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccga 262  Q
    ||| ||  ||||   |||| |||  |||||| | || | ||| |||||  | |||||||  || ||| |||||||||||||||||||| |  ||||||||    
T  44018899 tgtgtgcaaggaagaataatattgttaaaattgagaataaggttagca-gggttcggttcatcagttttttggatctcaaaattaaaatccgagaaccga 44018997  T
Q  263 accaaactatatcagtttaggttggttcggtt 294  Q
    ||||||||| ||| ||||| ||||||||||||    
T  44018998 accaaactaaatcggtttaagttggttcggtt 44019029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 177 - 301
Target Start/End: Complemental strand, 4240876 - 4240751
Alignment:
Q  177 gataaaattactaaaa-tggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatc 275  Q
    ||||| |||||||||| || ||||| | | |||||||| || ||||| |||| ||||||||||||||||||||||   ||||||| ||| ||||||||||    
T  4240876 gataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaaactaaactatatc 4240777  T
Q  276 agtttaggttggttcggttcgatttt 301  Q
      ||| ||||||||||||||||||||    
T  4240776 gattttggttggttcggttcgatttt 4240751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 206 - 309
Target Start/End: Original strand, 7772060 - 7772163
Alignment:
Q  206 tagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaac 305  Q
    ||||||||||||  ||  ||||||||||  |||| ||||| |||||| || ||||||||||||||| ||| |||||| |||||||||||||||||| |||    
T  7772060 tagcatcgattcaattcatcggttctttcaatctgaaaatcaaaaaccaaaaaccgaaccaaactagatcggtttagcttggttcggttcgattttaaac 7772159  T
Q  306 cgaa 309  Q
    ||||    
T  7772160 cgaa 7772163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 339
Target Start/End: Original strand, 35954766 - 35954877
Alignment:
Q  228 ttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatac 327  Q
    |||||||||||||||||| ||||||| |||||| ||||||| || |||   |||||||||||| |||||||||| |||| |||  || || |||||||||    
T  35954766 ttctttggatctcaaaatcaaaaactgagaaccaaaccaaattagatcgagttaggttggttcagttcgattttaaaccaaacaaaacaaggtcggatac 35954865  T
Q  328 tttctcggtttg 339  Q
    ||| ||| ||||    
T  35954866 tttttcgatttg 35954877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 340
Target Start/End: Complemental strand, 4638313 - 4638207
Alignment:
Q  234 ggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctc 333  Q
    |||||||||||| |||||| | ||||| |||||||||| |||||| | | ||||||||| |||||||  ||||||||| || || |||||||| ||| ||    
T  4638313 ggatctcaaaatgaaaaaccatgaaccaaaccaaactaaatcagtattgattggttcggatcgatttcaaaccgaaccgaacaaggtcggatattttttc 4638214  T
Q  334 ggtttgg 340  Q
    |||||||    
T  4638213 ggtttgg 4638207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 28199876 - 28199806
Alignment:
Q  95 tgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgt 165  Q
    ||||||||||||||||||| |||||| | |||| |||||||||||||||| ||  || |||||||| ||||    
T  28199876 tgatgggagaaagtgaatggattaaggagtattatatgttggactttaattttaggcctaatcataagtgt 28199806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 201
Target Start/End: Complemental strand, 30340665 - 30340563
Alignment:
Q  97 atgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatggg 196  Q
    |||||||||||||||||||| ||  | |||||||||||| |||||||| ||  |  |||||||| |||  ||||||||| ||||| |||| |||||| ||    
T  30340665 atgggagaaagtgaatgaataaaagagtattttatgttgaactttaattttaggtctaatcataagtg--tgtgaggagggataatattagtaaaatagg 30340568  T
Q  197 gagtg 201  Q
    |||||    
T  30340567 gagtg 30340563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 362
Target Start/End: Complemental strand, 31111572 - 31111444
Alignment:
Q  234 ggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctc 333  Q
    |||||||||||| |||||| | ||||| |||||||||| ||| ||||   ||||||| | ||  |||  ||||||||| || || |||||||| ||| ||    
T  31111572 ggatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcaattggttcagatcagtttcaaaccgaaccaaacaaggtcggatattttttc 31111473  T
Q  334 ggtttggttccatttgagttttcgatttc 362  Q
    |||||||||| |||||  |||||| ||||    
T  31111472 ggtttggttcaatttggattttcggtttc 31111444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 306
Target Start/End: Original strand, 35961755 - 35961835
Alignment:
Q  226 ggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaacc 306  Q
    |||||||| ||||||||||| ||||||| ||||||||| |||| || |||  || ||||||||||  ||||||||| ||||    
T  35961755 ggttctttagatctcaaaatcaaaaactgagaaccgaatcaaattagatcgattaaggttggttcaattcgattttgaacc 35961835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 170
Target Start/End: Original strand, 33221513 - 33221632
Alignment:
Q  53 agtagaaacgaaatagagtgtgagtgatgagatga-gat-atgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgag 150  Q
    |||||||| ||||| |||| ||||||| ||||||| ||| ||| |||||| ||||| | |||| ||||| |  ||||||||||||||||||||| ||  |    
T  33221513 agtagaaatgaaattgagtatgagtgaagagatgatgatgatgatgatggaagaaaataaatgtattaaaatgtattttatgttggactttaatgttagg 33221612  T
Q  151 cttaatcataggtgtttgtg 170  Q
    | |||||||| |||| ||||    
T  33221613 cataatcataagtgtgtgtg 33221632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 343
Target Start/End: Original strand, 12893947 - 12894049
Alignment:
Q  241 aaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttgg 340  Q
    ||||||||||||| ||||| ||||||||  |  || |||||| |||||||||||   |||| ||||||||| || || ||||||||| || | |||||||    
T  12893947 aaaattaaaaactgagaactgaaccaaagaagttcggtttagattggttcggttttgttttgaaccgaaccaaacaaggtcggatacatttttggtttgg 12894046  T
Q  341 ttc 343  Q
    |||    
T  12894047 ttc 12894049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 326
Target Start/End: Original strand, 13852296 - 13852388
Alignment:
Q  234 ggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggata 326  Q
    |||||||||||| |||||||| ||||| |||||||||| ||| |||| | |||||| || ||| |||  ||||||| | || |||||| ||||    
T  13852296 ggatctcaaaatgaaaaactatgaaccaaaccaaactagatcggttttgattggtttggatcggtttcaaaccgaatcaaacaaagtcagata 13852388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 55 - 339
Target Start/End: Complemental strand, 28550779 - 28550497
Alignment:
Q  55 tagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagctta 154  Q
    ||||||||||||||| ||||||||||||||||||||  | ||||||||||||||||||||||| |||| ||||||| ||||||||||||| ||||| |||    
T  28550779 tagaaacgaaatagaatgtgagtgatgagatgagat--gatgatgggagaaagtgaatgaattgagaagtattttacgttggactttaattttgagttta 28550682  T
Q  155 atcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaacta 254  Q
    |||||| |||| ||||||||| ||||| ||| | ||||| |||||||||| || |||||||||||||  |||||||||| ||||||||||||||||||      
T  28550681 atcataagtgtgtgtgaggagagataatattgccaaaatagggagtgaggttaacatcgattcggttcatcggttctttagatctcaaaattaaaaaccg 28550582  T
Q  255 agaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttg 339  Q
    |||| |||||||||||| ||| ||||| ||||||||||||||  ||| ||||||||| || |||||  |||||||| ||||||||    
T  28550581 agaatcgaaccaaactagatccgtttaagttggttcggttcggatttgaaccgaaccaaacaaagttagatactttttcggtttg 28550497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 53 - 362
Target Start/End: Complemental strand, 44471355 - 44471048
Alignment:
Q  53 agtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagct 152  Q
    ||||| ||||||||||||||||||||||| ||||||||  | | |||||||||||||||||||||| | | ||||||||||| | ||||||| |||||||    
T  44471355 agtagtaacgaaatagagtgtgagtgatgtgatgagat--gataatgggagaaagtgaatgaattatggagtattttatgttagcctttaattttgagct 44471258  T
Q  153 taatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaac 252  Q
    |||||||| |||| | ||||||| ||||| ||||||||| |||||||| | | |||||||| |||||||  |||||||||||||| ||||||||||||||    
T  44471257 taatcataagtgtgtttgaggagggataatattactaaactggggagttatgttagcatcggttcggttcatcggttctttggatttcaaaattaaaaac 44471158  T
Q  253 taagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatttgagt 352  Q
     |||||||||||||||||| ||| |||||| |||||| |||||| |||| ||||||||  || || ||||||||| || ||||||||||||  ||||  |    
T  44471157 caagaaccgaaccaaactagatcggtttagattggtttggttcggttttgaaccgaactaaacaaggtcggatacattttcggtttggttcggtttggat 44471058  T
Q  353 tttcgatttc 362  Q
    ||||||||||    
T  44471057 tttcgatttc 44471048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 54246827 - 54246529
Alignment:
Q  1 acggcggtgaggaacaatggggtatgtgtgacttgcggag--tgttctttgttcagtagaaacgaaatagagtgtgagtgatgagatgagatatgctgat 98  Q
    ||||||||||||||||||||| ||  |||||||||| ||   |||||||| |||||||||||||||||| ||||||| ||||||||||||||  | |||     
T  54246827 acggcggtgaggaacaatgggttagatgtgacttgcagataatgttcttt-ttcagtagaaacgaaatatagtgtgactgatgagatgagat--gatgac 54246731  T
Q  99 gggagaaagtgaatgaattaagaaa---tattttatgttggactttaatcttgagcttaatcataggtgttt-gtgaggagcgataaaattactaaaatg 194  Q
    | ||||||||||||| ||||| ||    ||||||||||||||||||||| |||||||||| ||||| ||||| |||||||||||| | |||| |||||||    
T  54246730 gagagaaagtgaatgtattaataaggagtattttatgttggactttaattttgagcttaagcatagatgttttgtgaggagcgatgatattaataaaatg 54246631  T
Q  195 gggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggtt 294  Q
    |||||||| | |||||||| || |||| ||||||||||||||||||||||||||||| | |||||||||||||||  |||| |||| |||||||||||||    
T  54246630 gggagtgaagttagcatcggtttggttcgtcggttctttggatctcaaaattaaaaattgagaaccgaaccaaacattatcggtttgggttggttcggtt 54246531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 53 - 338
Target Start/End: Original strand, 44681843 - 44682129
Alignment:
Q  53 agtagaaacgaaatagagtgtgagtgatgagatgagat-atgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagc 151  Q
    |||| |||||||||||| | |||||||||||||||||| ||| |||||||||||||| ||||||||||| | ||||||||||||||||||||| ||||||    
T  44681843 agtataaacgaaatagattatgagtgatgagatgagatgatgatgatgggagaaagtaaatgaattaaggagtattttatgttggactttaattttgagc 44681942  T
Q  152 ttaatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaa 251  Q
    ||||||||| |||| |||||| |  ||||| |||||| || |||| ||||||| |||||||| |||||||||||||||| | |||| |||||||||||||    
T  44681943 ttaatcataagtgtgtgtgagaacggataatattactcaa-tgggaagtgaggttagcatcggttcggtttgtcggttcatcggatttcaaaattaaaaa 44682041  T
Q  252 ctaagaaccgaaccaaactatatcagtttagg-ttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggttt 338  Q
    | ||||||| |||||||||| ||| ||||||| ||||||| ||||| |||| | ||||||| || || |||| ||||||| |||||||    
T  44682042 ccaagaaccaaaccaaactagatcggtttaggtttggttcagttcggttttgatccgaaccaaacaaggtcgtatactttttcggttt 44682129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 2 - 338
Target Start/End: Original strand, 779295 - 779629
Alignment:
Q  2 cggcggtgaggaacaatggggtatgtgtgacttgcgg--agtgttctttgttcagtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatg 99  Q
    |||||||||||||| ||||| || |||||||| ||||  ||||||||||  | | ||||||||||||||||||  ||||||||||||||||  | |||||    
T  779295 cggcggtgaggaacgatgggttaggtgtgactagcggctagtgttcttttct-attagaaacgaaatagagtg--agtgatgagatgagat--gatgatg 779389  T
Q  100 ggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatggggag 199  Q
    | ||||||||| ||||||| ||| ||||||||||||| ||||||| ||||| ||||||||| |||| ||||||||| ||||  ||||| ||||||| |||    
T  779390 gaagaaagtgagtgaattatgaagtattttatgttggcctttaattttgagtttaatcataagtgtatgtgaggagtgatagtattacaaaaatggagag 779489  T
Q  200 tgaggctagcatcgattcggtttgtcggttctttggatctc-aaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgat 298  Q
    ||||  |||||||| |||||||  |||||||||||||| || |||||||||||| |||||||||||||||||| ||  ||||||||||||||| |||  |    
T  779490 tgagattagcatcggttcggttcatcggttctttggatttcaaaaattaaaaaccaagaaccgaaccaaactagattggtttaggttggttcgattctgt 779589  T
Q  299 ttttaaccgaacctaataaagtcggatactttctcggttt 338  Q
    ||| ||||||||  || || || ||||||||| |||||||    
T  779590 tttgaaccgaactaaacaaggttggatactttttcggttt 779629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 53 - 362
Target Start/End: Complemental strand, 26757938 - 26757624
Alignment:
Q  53 agtagaaacgaaatagagtgtgagtgatgagatgagat---atgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttga 149  Q
    |||||||||||||||||||||| |||||||||||||||   ||| ||||| |||||||||||||||||||| | |||||||||||| |||||||| ||||    
T  26757938 agtagaaacgaaatagagtgtgggtgatgagatgagatgagatgatgatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttga 26757839  T
Q  150 gcttaatcataggtgtttgtgag--gagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaatta 247  Q
    ||||||||||| |||| |||| |  ||  ||||| ||||||||||||| |||||||| ||  |||| ||| |||| ||| ||||||||||||||||||||    
T  26757838 gcttaatcataagtgtgtgtgtgtggaaggataatattactaaaatggagagtgaggttactatcggttcagtttatcgattctttggatctcaaaatta 26757739  T
Q  248 aaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttccatt 347  Q
    ||| | |||||||||||||| |||||||  ||||||||||||||||||  |||| |||  |||| || || |||| ||||||| ||| ||| |||  |||    
T  26757738 aaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagttttaaactaaaccaaacaacgtcgaatactttttcgattttgtttgatt 26757639  T
Q  348 tgagttttcgatttc 362  Q
    ||  |||||||||||    
T  26757638 tggattttcgatttc 26757624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 53 - 276
Target Start/End: Complemental strand, 23659724 - 23659501
Alignment:
Q  53 agtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagct 152  Q
    ||||||||||||||||| || |||||||||||| ||||  | |||| | ||||||||||||||||||| | ||||||||||||||||||||| |||||||    
T  23659724 agtagaaacgaaatagactgcgagtgatgagataagat--gatgatagtagaaagtgaatgaattaaggagtattttatgttggactttaattttgagct 23659627  T
Q  153 taatcataggtgtttgtg--aggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaa 250  Q
    |||| ||| |||| ||||  ||||| ||||| ||||||||||||| |||||| | |||||||| |||||||   |||||| |||||||||||||||||||    
T  23659626 taattataagtgtgtgtgtgaggagggataatattactaaaatggagagtgatgttagcatcggttcggttcaccggttcattggatctcaaaattaaaa 23659527  T
Q  251 actaagaaccgaaccaaactatatca 276  Q
    || |||||||||| ||||||| ||||    
T  23659526 accaagaaccgaatcaaactagatca 23659501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 6 - 264
Target Start/End: Original strand, 33231310 - 33231567
Alignment:
Q  6 ggtgaggaacaatggggtatgtgtgacttgcgg--agtgttctttgttcagtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggag 103  Q
    |||||||||||||||| || |||||||| ||||  ||| |||||| || |  ||||||||||||||||||||| |||||||||||||  | ||||| |||    
T  33231310 ggtgaggaacaatgggttaggtgtgactagcggctagtattctttttt-accagaaacgaaatagagtgtgagcgatgagatgagat--gatgatgtgag 33231406  T
Q  104 aaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgag 203  Q
    ||||||||||||||  | | ||||||||| ||  ||||||| ||||||||||||||| |||| | |||||||  |||| |||||||||||||||||||||    
T  33231407 aaagtgaatgaattgtggagtattttatgctgacctttaattttgagcttaatcataagtgtatatgaggaggtataatattactaaaatggggagtgag 33231506  T
Q  204 gctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaac 264  Q
    | |||||||| |||||||  ||||||||| | || |||||||||||||| |||||||||||    
T  33231507 gttagcatcggttcggttcatcggttcttcgaatttcaaaattaaaaaccaagaaccgaac 33231567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 95 - 338
Target Start/End: Original strand, 30554427 - 30554670
Alignment:
Q  95 tgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatg 194  Q
    |||||||||||||||||| ||| |   | |||||| ||||| | || ||| ||||||| ||||| | |||| ||||| ||| |||||  |||| ||| ||    
T  30554427 tgatgggagaaagtgaataaatcattgagtattttttgttgtatttgaattttgagctcaatcacaagtgtgtgtgatgagggataatgttacaaaattg 30554526  T
Q  195 gggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggtt 294  Q
    || ||||||| | |||||| |||| ||  || ||||||||||| |||||||||||||   ||||||||||||||||| ||| |||||| |||||||||||    
T  30554527 ggaagtgaggatggcatcggttcgattcatcagttctttggatatcaaaattaaaaatcgagaaccgaaccaaactagatcggtttagattggttcggtt 30554626  T
Q  295 cgatttttaaccgaacctaataaagtcggatactttctcggttt 338  Q
    ||||||| ||||||||  || || |||||||||||| |||||||    
T  30554627 cgattttgaaccgaactaaacaaggtcggatactttttcggttt 30554670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 53 - 311
Target Start/End: Complemental strand, 44285881 - 44285642
Alignment:
Q  53 agtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagct 152  Q
    ||||||||||||||||||||||| ||||||||||||  | | |||||||||||||||||||||||| | | ||||||||||||| ||      |||||||    
T  44285881 agtagaaacgaaatagagtgtgaatgatgagatgag--acgatgatgggagaaagtgaatgaattatggagtattttatgttggcct------ttgagct 44285790  T
Q  153 taatcataggtgtttgtg--aggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaa 250  Q
    |||||||| |||| ||||  ||||| ||||| |||||||||||||||||||||| || ||             | ||||||||| || ||||||||||||    
T  44285789 taatcataagtgtgtgtgtcaggagtgataatattactaaaatggggagtgaggttaaca-------------taggttctttgaatttcaaaattaaaa 44285703  T
Q  251 actaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacc 311  Q
    ||  ||||| ||||||||||| |||  ||||||||||||||||||| |||| |||||||||    
T  44285702 accgagaactgaaccaaactaaatcgatttaggttggttcggttcggttttgaaccgaacc 44285642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 110 - 294
Target Start/End: Original strand, 26918347 - 26918529
Alignment:
Q  110 aatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagc 209  Q
    ||||||||||| |  || ||||| ||||||||||| ||||||||||| ||| ||||  |||||||| ||||| ||||||||||| ||||||  || ||||    
T  26918347 aatgaattaaggagcatattatgctggactttaattttgagcttaattataagtgt--gtgaggagggataatattactaaaatagggagtagggttagc 26918444  T
Q  210 atcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggtt 294  Q
    |||  |||| ||  |||| |||||| |||||||||||||||| | ||||| ||||||||||| |||| |||||||||||||||||    
T  26918445 atcagttcgattcatcggctctttgaatctcaaaattaaaaattgagaactgaaccaaactagatcaatttaggttggttcggtt 26918529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 96 - 343
Target Start/End: Complemental strand, 46892883 - 46892654
Alignment:
Q  96 gatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatgg 195  Q
    |||| |||||||||||||||||||| | |||||||||||| |||||||| ||||| | |||| || |||| ||||| ||| ||||| ||||||||||||     
T  46892883 gatgagagaaagtgaatgaattaaggagtattttatgttgaactttaattttgagatcaatcgtaagtgtgtgtgatgagggataatattactaaaatga 46892784  T
Q  196 ggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttc 295  Q
    ||||||||| |||||     |||||||   ||||| |||||||||||||||||||||  |||| ||||||||||          ||| |||||| |||||    
T  46892783 ggagtgaggttagca-----tcggttt---ggttcattggatctcaaaattaaaaaccgagaatcgaaccaaac----------tagattggtttggttc 46892702  T
Q  296 gatttttaaccgaacctaataaagtcggatactttctcggtttggttc 343  Q
    | |||| ||||||||| || || |||||||| ||| ||||||||||||    
T  46892701 ggttttaaaccgaaccaaacaaggtcggatattttttcggtttggttc 46892654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 53 - 343
Target Start/End: Original strand, 11503168 - 11503462
Alignment:
Q  53 agtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagct 152  Q
    |||||||| |||||||||| ||||||||||||||||||  |   ||| ||| ||||||||| |||| | | ||||||||||||| ||||||| |||  |     
T  11503168 agtagaaatgaaatagagtctgagtgatgagatgagattagt--atgagaggaagtgaatggattatgtagtattttatgttgggctttaattttggaca 11503265  T
Q  153 taatcataggtgtttgtg------aggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaatt 246  Q
    |||||||| |||| ||||      ||||| ||||| | || ||||||||||||||||| |||||| | |||||||| ||||||  ||||||||||||||     
T  11503266 taatcataagtgtgtgtgtgtgtgaggagggataataatagtaaaatggggagtgaggttagcatgggttcggtttatcggtttcttggatctcaaaatg 11503365  T
Q  247 aaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttc 343  Q
    |||||   |||||| |||||||  | ||| |||| | ||||||||||||| |||| ||||  |||  | || ||||||||| || | ||||||||||    
T  11503366 aaaaatcgagaaccaaaccaaataagatcggtttcgattggttcggttcggttttgaaccttaccagacaaggtcggatacatttttggtttggttc 11503462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 330
Target Start/End: Complemental strand, 13870408 - 13870262
Alignment:
Q  183 attactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttag 282  Q
    |||| |||||||||| |||||  |||||||| |||||| | |||||||||||||||||||||| |||||| |||||||||| ||||| ||| | ||||||    
T  13870408 attagtaaaatggggggtgagt-tagcatcggttcggtctttcggttctttggatctcaaaatcaaaaaccaagaaccgaatcaaacaataccggtttag 13870310  T
Q  283 gttggttcggttcgatttttaaccgaacctaataaagtcggatacttt 330  Q
    |  |||| | ||||  ||| |||||||||  | || ||||||||||||    
T  13870309 gccggtttgattcggctttgaaccgaaccagacaaggtcggatacttt 13870262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 167 - 342
Target Start/End: Complemental strand, 27524243 - 27524068
Alignment:
Q  167 tgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaacca 266  Q
    ||||||||| ||||| | || |||||||||||||| || || ||| | |||||||  ||| ||| |||||||| ||||||||||||  ||||||||||||    
T  27524243 tgtgaggagagataataatagtaaaatggggagtggggttaccattggttcggttcatcgattccttggatctgaaaattaaaaacagagaaccgaacca 27524144  T
Q  267 aactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggtt 342  Q
    ||| |  ||  ||||| |||||| |||| | |||| | ||||||| || || |||| |||| || |||||||||||    
T  27524143 aacaaggtcgatttagattggtttggtttggttttgatccgaaccaaacaaggtcgaataccttttcggtttggtt 27524068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 104 - 213
Target Start/End: Complemental strand, 35847414 - 35847303
Alignment:
Q  104 aaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgag--gagcgataaaattactaaaatggggagtg 201  Q
    |||||||||||||||| || ||| |||||||||| |||||| ||  || ||||||||  ||| ||||||  ||| ||||| |||| |||||||| |||||    
T  35847414 aaagtgaatgaattaaaaagtatattatgttggattttaattttaggcctaatcataaatgtgtgtgagatgagagataatattaataaaatggagagtg 35847315  T
Q  202 aggctagcatcg 213  Q
    ||| ||||||||    
T  35847314 aggttagcatcg 35847303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 301
Target Start/End: Original strand, 12937750 - 12937822
Alignment:
Q  229 tctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttt 301  Q
    ||||||||||| || || ||||| | |||||||||||||| |  ||| |||||||||||||||||||| ||||    
T  12937750 tctttggatcttaagatgaaaaattgagaaccgaaccaaaattgatcggtttaggttggttcggttcggtttt 12937822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 46892926 - 46892877
Alignment:
Q  39 agtgttctttgttcagtagaaacgaaatagagtgtgagtgatgagatgaga 89  Q
    |||||||||| || ||||||||||||||||| |||||||| ||||||||||    
T  46892926 agtgttctttttt-agtagaaacgaaatagattgtgagtggtgagatgaga 46892877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 7e-68; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 3 - 339
Target Start/End: Complemental strand, 32322188 - 32321853
Alignment:
Q  3 ggcggtgaggaacaatggggtatgtgtgacttgcgg--agtgttctttgttcagtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgg 100  Q
    |||| |||||||||||||| ||||| ||||| ||||  |||||||||| |  |||||||  |||||||| |||||||||||| |||||||  | ||||||    
T  32322188 ggcgatgaggaacaatgggttatgtatgactggcggttagtgttcttttt--agtagaattgaaatagactgtgagtgatgacatgagat--gatgatgg 32322093  T
Q  101 gagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagctt-aatcataggtgtttgtgaggagcgataaaattactaaaatggggag 199  Q
    |||||||| ||||||||||| | ||||||||||||||||||||||||||| || ||||||| |||| ||||||||| ||||| ||||||||||||| |||    
T  32322092 gagaaagtaaatgaattaaggagtattttatgttggactttaatcttgagttttaatcataagtgtgtgtgaggagagataatattactaaaatggagag 32321993  T
Q  200 tgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatt 299  Q
    ||||| |||||| | || ||||| ||||||| ||| |||| ||||||||||||  |||||||||||||| || ||| ||||| |||| ||||||| | ||    
T  32321992 tgaggttagcattggtttggtttatcggttcattgaatcttaaaattaaaaaccgagaaccgaaccaaattagatcggtttatgttgattcggtttgttt 32321893  T
Q  300 tttaaccgaacctaataaagtcggatactttctcggtttg 339  Q
    || ||||||||| || || |||| ||||||| ||||||||    
T  32321892 ttaaaccgaaccaaacaaggtcgaatactttttcggtttg 32321853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 73 - 340
Target Start/End: Original strand, 3767526 - 3767789
Alignment:
Q  73 tgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgag 172  Q
    ||||||||||||||||||  | | ||||||||||||||||| |||||| |  |||||||||||||||||||| ||||| |||||||||| ||| ||||||    
T  3767526 tgagtgatgagatgagat--gat-atgggagaaagtgaatggattaaggataattttatgttggactttaattttgagtttaatcatag-tgtgtgtgag 3767621  T
Q  173 gagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactat 272  Q
     || ||||| |||||||||||||||||||||| |||||||| |||||||  ||||||| |||||||||||||| ||||||  |||||| ||||||||||     
T  3767622 aagggataatattactaaaatggggagtgaggttagcatcggttcggttcatcggttcattggatctcaaaataaaaaaccgagaaccaaaccaaactag 3767721  T
Q  273 atcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttgg 340  Q
    ||| |||||| ||||||||||||| |||| ||||||||  || || |||||||||||| |||||||||    
T  3767722 atcggtttagattggttcggttcggttttgaaccgaactaaacaaggtcggatactttttcggtttgg 3767789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 39 - 362
Target Start/End: Original strand, 16570697 - 16571016
Alignment:
Q  39 agtgttctttgttcagtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggac 138  Q
    |||||||||| ||| ||||||||  |||||||||||||||| ||||||||||  | |||||| |||||||||| |||||||| | |||||||| ||| |     
T  16570697 agtgttcttttttc-gtagaaacagaatagagtgtgagtgacgagatgagat--gatgatggcagaaagtgaacgaattaaggagtattttatattgtat 16570793  T
Q  139 tttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatc 238  Q
    |||||| ||||| |||||||||  ||| ||||||||| ||||| | |||||||||||||||||| | |||||||| ||| |||  |||||||||||||||    
T  16570794 tttaattttgagtttaatcataaatgtgtgtgaggagggataataatactaaaatggggagtgaagttagcatcggttcagttcatcggttctttggatc 16570893  T
Q  239 tcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggttt 338  Q
    |||||||||||||   |||||| ||||||| || ||| ||||||||||||| |||||| |||| |||| |||| || || || ||||| ||| | |||||    
T  16570894 tcaaaattaaaaatcgagaacctaaccaaattagatcggtttaggttggtttggttcggttttgaaccaaaccaaacaaggttggata-ttttttggttt 16570992  T
Q  339 ggttccatttgagttttcgatttc 362  Q
    |||||  ||||| |||| ||||||    
T  16570993 ggttcggtttgaatttttgatttc 16571016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 53 - 294
Target Start/End: Complemental strand, 9040750 - 9040511
Alignment:
Q  53 agtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagct 152  Q
    |||||||| |||||||||| ||||||||||||||||||  | | |||||||||||||||||||||||| | |||||||| |||  ||||||| ||||||     
T  9040750 agtagaaatgaaatagagtctgagtgatgagatgagat--gataatgggagaaagtgaatgaattaagtagtattttatcttgagctttaattttgagcc 9040653  T
Q  153 taatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaac 252  Q
    |||||||| |||| ||||||||| ||||| | || ||||||||| |||| || ||||||| | ||||||  ||||||  || ||||||||||| ||||||    
T  9040652 taatcataagtgtgtgtgaggagggataataatagtaaaatgggaagtggggttagcatcaactcggttcatcggtttcttagatctcaaaatgaaaaac 9040553  T
Q  253 taagaaccgaaccaaactatatcagtttaggttggttcggtt 294  Q
      |||||| |||||||| | ||| |||||| |||||||||||    
T  9040552 cgagaaccaaaccaaacaagatcggtttagattggttcggtt 9040511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 61 - 311
Target Start/End: Complemental strand, 9505358 - 9505098
Alignment:
Q  61 cgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcata 160  Q
    |||||||||||||||| |||||||| |    || |||||||||||||||||||||||||| | |||  ||||||| |||||||| ||||||||||||| |    
T  9505358 cgaaatagagtgtgagggatgagatca----tgatgatgggagaaagtgaatgaattaaggagtatcatatgttgaactttaattttgagcttaatcaca 9505263  T
Q  161 g--------------gtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaatt 246  Q
                   |||| ||||||||  ||||| |||||||||||||||||||||| | |||||| |||||||| ||||||  |||||| ||||||||    
T  9505262 aatatgtgtgtgtgtgtgtgtgtgaggaaggataatattactaaaatggggagtgaggttggcatcggttcggtttatcggtttgttggatttcaaaatt 9505163  T
Q  247 aaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacc 311  Q
    |||| |  ||||||||||||||||||||| |||| |||||||||||||||||||| || ||||||    
T  9505162 aaaatcctagaaccgaaccaaactatatcggttttggttggttcggttcgattttgaatcgaacc 9505098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 53 - 340
Target Start/End: Original strand, 25455980 - 25456265
Alignment:
Q  53 agtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagct 152  Q
    |||||||| ||||| |||| |||||||||||||||  |||| |||| | |||||||||||| |||||| | || |||||| ||| ||||||| ||| ||     
T  25455980 agtagaaatgaaatcgagtttgagtgatgagatga--tatgatgatagaagaaagtgaatggattaagtagtactttatgctgggctttaattttgggca 25456077  T
Q  153 taatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaac 252  Q
    || ||||| |||| ||||| ||| ||||| | || ||||||||||||||||| |||||||  |||| ||  ||||||  |||||||||||||| ||||||    
T  25456078 tactcataagtgtgtgtgaagagggataataatagtaaaatggggagtgaggttagcatcagttcgattcatcggtttattggatctcaaaatgaaaaac 25456177  T
Q  253 taagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttgg 340  Q
      | |||| |||||||| | ||  |||||| ||| ||||||||| |||| ||| |||||  | || ||||||||| ||  ||||||||    
T  25456178 cgataaccaaaccaaacaagattggtttagattgattcggttcggttttgaactgaaccagacaaggtcggatacatttccggtttgg 25456265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 271
Target Start/End: Original strand, 3555266 - 3555482
Alignment:
Q  53 agtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagct 152  Q
    |||||||  ||||||| ||||||||||||||||||||||   ||||| ||||||||||||| |||||  | |||||||||||| |||||||| || ||||    
T  3555266 agtagaagtgaaatagtgtgtgagtgatgagatgagata--atgatgagagaaagtgaatg-attaatgagtattttatgttgaactttaattttaagct 3555362  T
Q  153 taatcataggtgtttgtgaggagcgataaaa--ttactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaa 250  Q
     ||||||| |||| || |||||| ||||| |  ||| |  |||| ||||| ||| ||||||| | | | ||  ||||||||||| || ||||||||||||    
T  3555363 aaatcata-gtgtgtgggaggagggataatattttattttaatgaggagtaaggttagcatcaacttgtttcatcggttctttgaatttcaaaattaaaa 3555461  T
Q  251 actaagaaccgaaccaaacta 271  Q
    | |||||||| ||||||||||    
T  3555462 attaagaaccaaaccaaacta 3555482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 34760833 - 34760910
Alignment:
Q  234 ggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacc 311  Q
    |||||||||||| |||||| ||||||| |||||||||| ||| ||||||||||||||||||||||||| |||||||||    
T  34760833 ggatctcaaaatcaaaaaccaagaaccaaaccaaactagatcggtttaggttggttcggttcgattttgaaccgaacc 34760910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 53 - 290
Target Start/End: Original strand, 25808133 - 25808368
Alignment:
Q  53 agtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagct 152  Q
    |||||||| ||||| |||| ||||||||||||| ||||  |  |||||||||||||||||| |||||| | || ||||||   | ||||||| ||  ||     
T  25808133 agtagaaatgaaatcgagtctgagtgatgagattagat--gacgatgggagaaagtgaatggattaagtagtactttatgcacggctttaattttaggca 25808230  T
Q  153 taatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaac 252  Q
    || ||||| |||| ||||| ||| ||||| | || ||||||| ||||||||| |||||||| |||| ||  ||| ||  |||||||||||||| ||||||    
T  25808231 tactcataagtgtgtgtgaagagggataataatattaaaatgaggagtgaggttagcatcggttcgattcatcgatttcttggatctcaaaatgaaaaac 25808330  T
Q  253 taagaaccgaaccaaactatatcagtttaggttggttc 290  Q
      |||| | |||||||  | ||| |||||| |||||||    
T  25808331 cgagaatcaaaccaaaaaagatcggtttagattggttc 25808368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 293
Target Start/End: Original strand, 37379904 - 37380119
Alignment:
Q  73 tgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgag 172  Q
    ||||||||||||||||||  | |||||| | |||||||||| ||||||||  |||||||||| | ||||||| |||||  ||| |||| |  |  |||||    
T  37379904 tgagtgatgagatgagat--gatgatggaa-aaagtgaatggattaagaagcattttatgttaggctttaattttgagtctaaccataagaat--gtgag 37379998  T
Q  173 gagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactat 272  Q
    ||| ||||| |||| |||||||| ||||| || || ||| | |||||||   | |||| || ||||||||||| ||||||| |||||||||  |||  ||    
T  37379999 gagtgataatattagtaaaatggagagtggggttaccattggttcggttcacccgttcgttagatctcaaaatgaaaaactgagaaccgaaataaataat 37380098  T
Q  273 atcagtttaggttggttcggt 293  Q
     ||||||||| ||||||||||    
T  37380099 gtcagtttagattggttcggt 37380119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 25343960 - 25344049
Alignment:
Q  53 agtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaat 144  Q
    |||||||| ||||| |||| |||||||||| |||||||  | ||||||||||||||||||| |||||| | || |||||||||| |||||||    
T  25343960 agtagaaatgaaatcgagtctgagtgatgacatgagat--gatgatgggagaaagtgaatggattaagtagtactttatgttgggctttaat 25344049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 343
Target Start/End: Original strand, 40434962 - 40435089
Alignment:
Q  216 tcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaat 315  Q
    ||||||| |||||||||||||||| ||||| ||||| | |||||||| ||||| || ||  |||||  || ||| ||||||||||| |||  |||   |     
T  40434962 tcggtttatcggttctttggatctaaaaataaaaaattgagaaccgagccaaaataaattggtttacatttgtttggttcgattttgaactcaactagac 40435061  T
Q  316 aaagtcggatactttctcggtttggttc 343  Q
    |||||||||||||||||| |||||||||    
T  40435062 aaagtcggatactttctcagtttggttc 40435089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 149
Target Start/End: Original strand, 20860215 - 20860322
Alignment:
Q  39 agtgttctttgttcagtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggac 138  Q
    |||||||||| || |||| ||| ||||||||||||| ||||| ||||||||   | ||||| ||||||||||||  |||||| | ||||||||||| |||    
T  20860215 agtgttctttttt-agtataaaagaaatagagtgtgggtgattagatgagac--gatgatgagagaaagtgaatagattaaggagtattttatgttcgac 20860311  T
Q  139 tttaatcttga 149  Q
    |||||| ||||    
T  20860312 tttaattttga 20860322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 20860351 - 20860412
Alignment:
Q  152 ttaatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcg 213  Q
    |||||| || |||| ||||||||| ||||| |||||||||||| ||||||||  ||||||||    
T  20860351 ttaatcttaagtgtgtgtgaggagtgataatattactaaaatgaggagtgagattagcatcg 20860412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 58 - 339
Target Start/End: Original strand, 1498047 - 1498326
Alignment:
Q  58 aaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatc 157  Q
    ||||||| |||||||||||||||||||||| ||  | ||||||||||||||||||| |||||| | ||||||| ||||||||| ||| ||||||||||||    
T  1498047 aaacgaattagagtgtgagtgatgagatgaaat--gatgatgggagaaagtgaatgtattaaggagtattttaggttggacttcaattttgagcttaatc 1498144  T
Q  158 ataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaaga 257  Q
    ||| |||| || ||| || ||||| |||||||||||||||||| | | |||||||| |||||||  ||||||  |||||||||||||| ||| ||| |||    
T  1498145 ataagtgtgtgcgagaagggataatattactaaaatggggagtcatgttagcatcggttcggttcatcggtttattggatctcaaaataaaatactgaga 1498244  T
Q  258 accgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttg 339  Q
    ||| |||  ||||| ||| |||||||||||||| ||||| |||| ||||||||| || || |||||||| |||||| |||||    
T  1498245 accaaacttaactacatcggtttaggttggttcagttcggttttgaaccgaaccaaacaaggtcggatattttctcagtttg 1498326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 95 - 343
Target Start/End: Original strand, 7239167 - 7239420
Alignment:
Q  95 tgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatg 194  Q
    ||||| ||||||||||||||| |||||| | ||||||||||||||||| | ||||||||||||||| |||  ||||||||| ||||| ||||||||||||    
T  7239167 tgatgagagaaagtgaatgaagtaagaagtgttttatgttggactttagttttgagcttaatcataagtgcatgtgaggagagataatattactaaaatg 7239266  T
Q  195 gggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggtt 294  Q
    || ||||||| |||||||| |||| ||| |||| |||| |||||| ||||| |||||||||||||||||||||||||  ||  |||| ||||||||||||    
T  7239267 ggaagtgaggttagcatcggttcgatttatcggatcttgggatcttaaaataaaaaactaagaaccgaaccaaactaactcgatttaagttggttcggtt 7239366  T
Q  295 cgatttt-----taaccgaacctaataaagtcggatactttctcggtttggttc 343  Q
    || ||||      |||| |||||||||| |||||||||||| || |||||||||    
T  7239367 cggttttgaaccaaaccaaacctaataaggtcggatactttttcagtttggttc 7239420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 95 - 343
Target Start/End: Original strand, 7244343 - 7244596
Alignment:
Q  95 tgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatg 194  Q
    ||||| ||||||||||||||| |||||| | ||||||||||||||||| | ||||||||||||||| |||  ||||||||| ||||| ||||||||||||    
T  7244343 tgatgagagaaagtgaatgaagtaagaagtgttttatgttggactttagttttgagcttaatcataagtgcatgtgaggagagataatattactaaaatg 7244442  T
Q  195 gggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggtt 294  Q
    || ||||||| |||||||| |||| ||| |||| |||| |||||| ||||| |||||||||||||||||||||||||  ||  |||| ||||||||||||    
T  7244443 ggaagtgaggttagcatcggttcgatttatcggatcttgggatcttaaaataaaaaactaagaaccgaaccaaactaactcgatttaagttggttcggtt 7244542  T
Q  295 cgatttt-----taaccgaacctaataaagtcggatactttctcggtttggttc 343  Q
    || ||||      |||| |||||||||| |||||||||||| || |||||||||    
T  7244543 cggttttgaaccaaaccaaacctaataaggtcggatactttttcagtttggttc 7244596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 39 - 295
Target Start/End: Complemental strand, 17770563 - 17770310
Alignment:
Q  39 agtgttctttgttcagtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggac 138  Q
    |||||||||| || |||||||| || |||||||||||||| |||||||||||  |  |||| ||  |||||||||||||||| | ||||||||||||| |    
T  17770563 agtgttctttttt-agtagaaatgatatagagtgtgagtggtgagatgagatgag--gatgagatgaagtgaatgaattaaggagtattttatgttgggc 17770467  T
Q  139 tttaatcttgagcttaatcataggtgtttgt--gaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttgga 236  Q
    |||||| ||||||||||| |||  |||||||  |||||| | ||| |||| ||||||||| |||| || |||||||| || ||||  ||  |||||||||    
T  17770466 tttaattttgagcttaataataaatgtttgtgcgaggag-ggtaatattagtaaaatgggaagtg-ggttagcatcggtttggttcatctattctttgga 17770369  T
Q  237 tctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttc 295  Q
    ||||||| |||||||| ||||||  || | |||||  || |||||||||||||||||||    
T  17770368 tctcaaatttaaaaaccaagaactaaatccaactagttcggtttaggttggttcggttc 17770310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 95 - 269
Target Start/End: Complemental strand, 39786248 - 39786072
Alignment:
Q  95 tgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtg--aggagcgataaaattactaaaa 192  Q
    ||||||||||||| ||||| ||| |  | ||||||||||   |||||||| ||| | ||||||||| |||| ||||  || || ||||| |||| |||||    
T  39786248 tgatgggagaaagcgaatggattcatgactattttatgtcacactttaattttgggtttaatcataagtgtgtgtgcgagaagagataatattagtaaaa 39786149  T
Q  193 tggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaac 269  Q
    ||| || |  || |||||||| ||| ||||||||| || |||||||||||| | |||| || |||||||||||||||    
T  39786148 tggagattcgggttagcatcggttcagtttgtcggatccttggatctcaaattgaaaatctgagaaccgaaccaaac 39786072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 20665706 - 20665643
Alignment:
Q  53 agtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaatta 118  Q
    ||||||||| ||||||||||||||||||||||||||  ||| ||| || |||||||||||||||||    
T  20665706 agtagaaacaaaatagagtgtgagtgatgagatgag--atgatgacggaagaaagtgaatgaatta 20665643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 207 - 343
Target Start/End: Complemental strand, 29126269 - 29126133
Alignment:
Q  207 agcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaacc 306  Q
    ||||||| |||||||  | |||| ||||||| ||||||| ||||| | |||||| ||| |||||| | | |||||||||||||  ||||| |||  |||     
T  29126269 agcatcggttcggttcattggttttttggatatcaaaataaaaaattgagaaccaaactaaactagaccggtttaggttggtttagttcggtttcaaact 29126170  T
Q  307 gaacctaataaagtcggatactttctcggtttggttc 343  Q
    || || || ||| ||||||||||| ||||||||||||    
T  29126169 gacccaaacaaaatcggatactttttcggtttggttc 29126133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 173
Target Start/End: Complemental strand, 31896180 - 31896103
Alignment:
Q  96 gatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgagg 173  Q
    |||| ||||||||||||| ||||  |||||||||||||||||||||||| ||| || ||| |||| || | |||||||    
T  31896180 gatgagagaaagtgaatggattataaaatattttatgttggactttaattttgggcctaaccataagtttgtgtgagg 31896103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 311
Target Start/End: Original strand, 41092009 - 41092105
Alignment:
Q  215 ttcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacc 311  Q
    |||||||  ||| ||| |||||||||||| | |||||| |||||| |||||||||  | || |||||| |||||| ||||||||||| | |||||||    
T  41092009 ttcggttcatcgattccttggatctcaaagtaaaaaaccaagaactgaaccaaacagtgtcggtttagattggtttggttcgattttgatccgaacc 41092105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 20665590 - 20665543
Alignment:
Q  39 agtgttctttgttcagtagaaacgaaatagagtgtgagtgatgagatga 87  Q
    |||||||||| || ||||||||| ||||||||| |||||||||||||||    
T  20665590 agtgttctttttt-agtagaaacaaaatagagtctgagtgatgagatga 20665543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 42 - 343
Target Start/End: Original strand, 53392983 - 53393291
Alignment:
Q  42 gttctttgttcagtagaaacgaaatagagtgtgagtgatgagatga------gat-atgctgatgggagaaagtgaatgaattaagaaatattttatgtt 134  Q
    ||||||| || | ||||||| |||||||||||||||||||||||||      ||| |||  ||||||||||||||||||||||| | |  ||||||||||    
T  53392983 gttctttttttaatagaaacaaaatagagtgtgagtgatgagatgatgagatgatgatgacgatgggagaaagtgaatgaattatggagcattttatgtt 53393082  T
Q  135 ggactttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttg 234  Q
    |  ||||||| ||||||||||||| | |||| ||||| ||| ||||| |||||||||||||  ||||||| |||||||| |||||||  ||||||| |||    
T  53393083 gacctttaattttgagcttaatcagaagtgtgtgtgaagagggataatattactaaaatggaaagtgaggttagcatcggttcggttcatcggttcattg 53393182  T
Q  235 gatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcg 334  Q
    ||| ||||| ||| ||||  ||||||||||||||||| ||| |||||||||||||||||||  |||| ||||||||| || || |||||||||||| | |    
T  53393183 gatttcaaagttataaaccgagaaccgaaccaaactagatcggtttaggttggttcggttcagttttaaaccgaaccaaacaaggtcggatacttttttg 53393282  T
Q  335 gtttggttc 343  Q
    |||||||||    
T  53393283 gtttggttc 53393291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 56 - 342
Target Start/End: Original strand, 8605985 - 8606267
Alignment:
Q  56 agaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaa 155  Q
    ||||| |||||||||| ||||||||||||||| ||  | |||| ||||||||||||||||||||| | ||||||||||||||||||||| ||| || |||    
T  8605985 agaaatgaaatagagtttgagtgatgagatgaaat--gatgataggagaaagtgaatgaattaaggagtattttatgttggactttaattttgggcctaa 8606082  T
Q  156 tcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaa 255  Q
    | ||| |||| ||  |||||  || | |||| |||||||||||||| || || ||||| |||| ||  | ||||| |||||||||||||| ||||||| |    
T  8606083 taataagtgtatg--aggagaaattatattagtaaaatggggagtgtggttaccatcggttcgattcattggttccttggatctcaaaatgaaaaactga 8606180  T
Q  256 gaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggtt 342  Q
    |||||||||||| | | ||| |||||| |||||||| || | |||| |||||| || || ||||| ||||||||| |||||||||||    
T  8606181 gaaccgaaccaaccaagatcggtttagattggttcgatttggttttgaaccgagccaaacaaagttggatactttttcggtttggtt 8606267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 53 - 311
Target Start/End: Complemental strand, 42141575 - 42141330
Alignment:
Q  53 agtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagct 152  Q
    |||||||| |||||||||||  ||| ||||||||||||  | ||||| |||||||||||| | ||||| | ||||||||||||||||||||| ||||| |    
T  42141575 agtagaaaagaaatagagtg--agtaatgagatgagat--gatgatgagagaaagtgaatca-ttaaggagtattttatgttggactttaattttgagat 42141481  T
Q  153 taatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaac 252  Q
    |||||||| |||| |||||||||  |||| |||||||||||| ||||||||  |||||||| |        |||||||||||||||||||||||||||||    
T  42141480 taatcataagtgtgtgtgaggaggtataatattactaaaatgaggagtgagtttagcatcggt--------tcggttctttggatctcaaaattaaaaac 42141389  T
Q  253 taagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacc 311  Q
     ||||||||||||||| || |||  |||||||| |||| ||||| |||| |||||||||    
T  42141388 caagaaccgaaccaaagtagatcgatttaggtttgttcagttcggttttgaaccgaacc 42141330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 39 - 231
Target Start/End: Original strand, 19681904 - 19682093
Alignment:
Q  39 agtgttctttgttcagtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggac 138  Q
    |||||||||| || |||||||||||||||| |||| |||||| |||||||||  | ||||||||||  |||||| ||||||| | ||||||||||| |||    
T  19681904 agtgttctttttt-agtagaaacgaaatagtgtgtaagtgattagatgagat--gatgatgggagaccgtgaataaattaaggagtattttatgtttgac 19682000  T
Q  139 tttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttct 231  Q
    |||||| |||||||||||| || |||| |||||| || ||||| |||||||||||| | ||||||| |||||||| || ||||  ||||||||    
T  19682001 tttaattttgagcttaatcgtaagtgtatgtgagaagggataatattactaaaatgagaagtgaggttagcatcggtttggttcatcggttct 19682093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 55 - 160
Target Start/End: Original strand, 13207239 - 13207343
Alignment:
Q  55 tagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaa-tcttgagctt 153  Q
    |||||| |||||||||| ||||||||||||||||  ||| |||| | |||||||||||| |||||  | ||||||||||||| |||||| | ||||||||    
T  13207239 tagaaatgaaatagagtctgagtgatgagatgag--atgatgatagaagaaagtgaatggattaatgagtattttatgttgggctttaatttttgagctt 13207336  T
Q  154 aatcata 160  Q
    |||||||    
T  13207337 aatcata 13207343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 96 - 311
Target Start/End: Original strand, 24466204 - 24466419
Alignment:
Q  96 gatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatgg 195  Q
    |||| ||||||||||||| ||||| || ||||||||||||||||||||| |||||| ||| |||| || | |||||||   ||||| |||| ||||||      
T  24466204 gatgagagaaagtgaatggattaaaaagtattttatgttggactttaattttgagcctaaccataagtttgtgtgaggtaggataatattagtaaaataa 24466303  T
Q  196 ggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttc 295  Q
    |||||| || || |||||  | ||||  ||||||    |||||||||||| |||||| | ||||| || ||||||| ||| ||||   ||||||||| ||    
T  24466304 ggagtgtggttatcatcggattggttcatcggtttcacggatctcaaaatgaaaaaccatgaaccaaatcaaactagatcggtttcaattggttcggatc 24466403  T
Q  296 gatttttaaccgaacc 311  Q
    | |||  |||||||||    
T  24466404 ggtttcaaaccgaacc 24466419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 39838950 - 39839029
Alignment:
Q  134 tggactttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcg 213  Q
    ||||||||||| ||||||||||||||| |||| ||||||||| ||||| |||||||||  | ||||||||| ||||||||    
T  39838950 tggactttaatattgagcttaatcataagtgtgtgtgaggagagataatattactaaatcgaggagtgaggttagcatcg 39839029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 23107801 - 23107873
Alignment:
Q  101 gagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgagg 173  Q
    ||||||||||||| ||||| || ||||||||||||||||||||| |||||| ||| |||| || | |||||||    
T  23107801 gagaaagtgaatggattaaaaagtattttatgttggactttaattttgagcctaaccataagtttgtgtgagg 23107873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 38388241 - 38388184
Alignment:
Q  53 agtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaat 112  Q
    |||||||| |||||||||| ||||||||||||||||  ||| |||| |||||||||||||    
T  38388241 agtagaaatgaaatagagtctgagtgatgagatgag--atgatgattggagaaagtgaat 38388184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 269
Target Start/End: Complemental strand, 8056942 - 8056836
Alignment:
Q  162 gtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccg 261  Q
    |||| ||||||||  ||||| |||| |||||||||||||| || ||| |||| ||| |||  ||||||  |||||||||||||| |||| |  |||||||    
T  8056942 gtgtgtgtgaggaaggataatattagtaaaatggggagtggggttaggatcggttcagttcatcggtttcttggatctcaaaatgaaaatc-gagaaccg 8056844  T
Q  262 aaccaaac 269  Q
    ||||||||    
T  8056843 aaccaaac 8056836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 38264847 - 38264887
Alignment:
Q  255 agaaccgaaccaaactatatcagtttaggttggttcggttc 295  Q
    |||||| ||||||| || |||||||||||||||||||||||    
T  38264847 agaaccaaaccaaattaaatcagtttaggttggttcggttc 38264887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 102 - 343
Target Start/End: Complemental strand, 48070905 - 48070664
Alignment:
Q  102 agaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatggggagtg 201  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||| |||| ||||| ||| ||||  |||||| |||||| |||||    
T  48070905 agaaagtgaatgaattaagaagtattttatgttggactttaattttgagattaatcataagtgtgtgtgaagagggatattattactgaaatggtgagtg 48070806  T
Q  202 aggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttt 301  Q
    ||| || ||||| ||| |||| |||||||||||||||||||||||||||||  ||||||||| ||||||| ||| ||||||||| |||||||||| ||||    
T  48070805 aggttaacatcggttcagtttatcggttctttggatctcaaaattaaaaaccgagaaccgaatcaaactagatcggtttaggttagttcggttcggtttt 48070706  T
Q  302 taaccgaacctaataaagtcggatactttctcggtttggttc 343  Q
     |||| || | || || |||||||| ||| | ||||| ||||    
T  48070705 gaaccaaatcaaacaaggtcggatatttttttggtttagttc 48070664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 5 - 311
Target Start/End: Original strand, 25545006 - 25545311
Alignment:
Q  5 cggtgaggaacaatggggtatgtgtgacttgcgg--agtgttctttgttcagtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatggga 102  Q
    ||||||||||| ||||| || |||||||| ||||  ||||||| || || ||||||||| |||||| ||  |||||||||||||||||  | || |||||    
T  25545006 cggtgaggaacgatgggttaggtgtgactagcggctagtgttcattttt-agtagaaacaaaatagggttggagtgatgagatgagat--ggtgttggga 25545102  T
Q  103 gaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatggggagtga 202  Q
    |||||||||||||||| | | ||||||||||||  ||||||| ||||||||||||||| |||| |||||||   ||||| ||||||||||||||||||||    
T  25545103 gaaagtgaatgaattatggagtattttatgttgacctttaattttgagcttaatcataagtgtatgtgaggcaggataatattactaaaatggggagtga 25545202  T
Q  203 ggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgattttt 302  Q
    || |||||| | |||| ||  | |||||||||||| | ||||||||||  | |||||| |||||||||| ||| |||||||||||||  ||||| ||||     
T  25545203 ggttagcattggttcgattcattggttctttggattttaaaattaaaagttgagaaccaaaccaaactagatcggtttaggttggtttagttcggttttg 25545302  T
Q  303 aaccgaacc 311  Q
    |||||||||    
T  25545303 aaccgaacc 25545311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 53 - 342
Target Start/End: Complemental strand, 31136477 - 31136196
Alignment:
Q  53 agtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagct 152  Q
    |||||||| | |||||||||||||||||||||| ||||  | |||| ||||||||||||||||||||| | ||||||||||||||||||||| |||||||    
T  31136477 agtagaaatggaatagagtgtgagtgatgagataagat--gatgataggagaaagtgaatgaattaaggagtattttatgttggactttaattttgagct 31136380  T
Q  153 taatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaac 252  Q
    |||| ||   ||| || |||| | ||||| ||||||| ||||  |||||||  |||||||| |||||||  ||||||||||||||||| |||||  ||||    
T  31136379 taattatgaatgtgtgcgagg-gggataatattactataatgatgagtgagtttagcatcggttcggttcatcggttctttggatctcgaaatttgaaac 31136281  T
Q  253 taagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggtt 342  Q
     ||||||| ||||||| |||||  ||||||||||||||||     |||| ||||||| | || || |||||||||||| |||||||||||    
T  31136280 caagaaccaaaccaaattatattggtttaggttggttcgg-----ttttgaaccgaatcaaacaaggtcggatactttttcggtttggtt 31136196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 125 - 311
Target Start/End: Original strand, 44523590 - 44523775
Alignment:
Q  125 attttatgttggactttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgt 224  Q
    |||||||||||||||||||| |||||| |||||||| |||| ||||||||||||||| ||||||||||||| |||||||| ||  |||||||| |||| |    
T  44523590 attttatgttggactttaattttgagcataatcataagtgtgtgtgaggagcgataatattactaaaatggagagtgaggttaatatcgattcagtttat 44523689  T
Q  225 cggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacc 311  Q
    || |||||||| |||||||||||||||   |||||||||||||| |||||  |||||||||||||||||| |||||| |||||||||    
T  44523690 cgtttctttgg-tctcaaaattaaaaatcgagaaccgaaccaaattatattggtttaggttggttcggtttgattttgaaccgaacc 44523775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 57 - 309
Target Start/End: Original strand, 12470084 - 12470325
Alignment:
Q  57 gaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaat 156  Q
    ||||||||||||||||  |||||||||||||       |||||||||| ||||||||||| ||  | ||||||||||||||||||||| ||||| | |||    
T  12470084 gaaacgaaatagagtg--agtgatgagatga-------tgatgggagagagtgaatgaatcaaagagtattttatgttggactttaattttgagttgaat 12470174  T
Q  157 cataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaag 256  Q
    |||| ||||  |||| ||| ||||| |||||||||||||||| ||||  ||||||| |||  |||  |||||||||||||||||||||||| ||||||||    
T  12470175 cataagtgt--gtgaagagggataatattactaaaatggggactgagattagcatcaatttagttcatcggttctttggatctcaaaattagaaactaag 12470272  T
Q  257 aaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaa 309  Q
    ||| ||||||||||| ||  ||||||||||| |||||| ||||||||||||||    
T  12470273 aacggaaccaaactagattggtttaggttggctcggtttgatttttaaccgaa 12470325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 5 - 311
Target Start/End: Original strand, 12471536 - 12471838
Alignment:
Q  5 cggtgaggaacaatggggtatgtgtgacttgcgg-agtgttctttgttcagtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggag 103  Q
    ||||||||||| ||||| |||||||||||  ||  | |||||||| || ||||||||| ||||||||||  ||||||||||||||||  | |||||||||    
T  12471536 cggtgaggaacgatgggttatgtgtgactgacgctaatgttctttttt-agtagaaacaaaatagagtg--agtgatgagatgagat--gatgatgggag 12471630  T
Q  104 aaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgag 203  Q
    ||||||| | ||  ||| | ||||||||| || |||||||| ||||| | | |||||  ||| | ||| ||| ||||| |||||||||||| ||||||||    
T  12471631 aaagtgagtaaacaaaggagtattttatggtgaactttaattttgagttgattcataattgtgtatgaagagggataatattactaaaatgaggagtgag 12471730  T
Q  204 gctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgattttta 303  Q
    | || ||||||||| |||  ||| ||||||| ||||||||||||||||||||||||||||| |||||| |||  |||| |||||||||||||| |||| |    
T  12471731 gttaacatcgattcagttcatcgattctttgaatctcaaaattaaaaactaagaaccgaactaaactagatcgatttaagttggttcggttcggttttga 12471830  T
Q  304 accgaacc 311  Q
    || |||||    
T  12471831 acagaacc 12471838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 97 - 311
Target Start/End: Original strand, 12470899 - 12471113
Alignment:
Q  97 atgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatggg 196  Q
    |||||||||||||||||||| ||| | ||||||||| ||||||||||| ||| | | |||||||   || | ||| ||  ||||| ||||||||||||||    
T  12470899 atgggagaaagtgaatgaatcaaggagtattttatggtggactttaattttgggttgaatcataatggtgtatgaagaaggataatattactaaaatggg 12470998  T
Q  197 gagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcg 296  Q
    |||||||  || ||||||||  |||  |||||| ||||||||||||||||||||||| |||||||||| |||||| | |  |||||||||||| ||||||    
T  12470999 gagtgagattaacatcgattaagttcatcggttttttggatctcaaaattaaaaactgagaaccgaactaaactagaccgatttaggttggttaggttcg 12471098  T
Q  297 atttttaaccgaacc 311  Q
    ||||| ||| |||||    
T  12471099 attttgaactgaacc 12471113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 12012739 - 12012984
Alignment:
Q  7 gtgaggaacaatggggtatgtgtgacttgcgg--agtgttctttgttcagtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatggg-ag 103  Q
    ||||||||||||||| || || ||||| ||||  ||||||| || || ||||||||||||||| |||||||||||| |||||||||  | ||||||| ||    
T  12012739 gtgaggaacaatgggttaggtatgactagcggctagtgttcgttttt-agtagaaacgaaatatagtgtgagtgataagatgagatgagatgatggggag 12012837  T
Q  104 aaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgag 203  Q
    |||||||||||||||   | ||||| ||||||  ||||||| || | ||||||||||  ||| | | ||||| |||||  ||||||||||| || |||||    
T  12012838 aaagtgaatgaattatagagtatttaatgttgacctttaattttaaacttaatcataaatgtgtat-aggagggataatcttactaaaatgaggggtgag 12012936  T
Q  204 gctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaa 251  Q
    | ||||| || |||||||| |||||||||||||| | |||||||||||    
T  12012937 gttagcaccggttcggtttatcggttctttggattttaaaattaaaaa 12012984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 74 - 269
Target Start/End: Original strand, 35738005 - 35738195
Alignment:
Q  74 gagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgagg 173  Q
    |||||||||||||||||  | ||||||||||| ||||||| |||||| | |||||||||||||| |||||| ||| || |||||||| ||||  |||| |    
T  35738005 gagtgatgagatgagat--gatgatgggagaa-gtgaatggattaaggagtattttatgttggaatttaattttgggcctaatcataagtgt--gtgatg 35738099  T
Q  174 agcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaac 269  Q
    || ||||| |||| |||||||||||||| || ||  |||  || ||||  ||||||| |||||||||||||| ||||||| |||||||||||||||    
T  35738100 agggataatattagtaaaatggggagtggggttacaatcagtttggttgatcggttccttggatctcaaaatgaaaaactgagaaccgaaccaaac 35738195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 73 - 341
Target Start/End: Original strand, 3996813 - 3997076
Alignment:
Q  73 tgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgag 172  Q
    |||||||||| |||||||  | ||| | |||||||||||||| ||||||| ||||||||| | ||||||||| ||| || |||||||| |||  ||||||    
T  3996813 tgagtgatgaaatgagat--gatgacgagagaaagtgaatgacttaagaagtattttatgcttgactttaattttgggcataatcataagtg--tgtgag 3996908  T
Q  173 gagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactat 272  Q
    ||| | ||  |||| |||||| |||||||  | || || || |||||||  | ||||| ||||||||||||| | |||||  ||||||||||||||| |     
T  3996909 gagagttattattagtaaaattgggagtggagttaccaacggttcggttcataggttccttggatctcaaaa-tgaaaaccgagaaccgaaccaaacaag 3997007  T
Q  273 atcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggt 341  Q
     |  |||||| |||||| |||||| |||| |||| |||| || |||||||||| |||  ||||||||||    
T  3997008 gttggtttagattggttaggttcggttttgaaccaaaccaaacaaagtcggattcttcttcggtttggt 3997076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 269
Target Start/End: Original strand, 2197509 - 2197732
Alignment:
Q  43 ttctttgttcagtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggacttta 142  Q
    |||||| || |||||||| |||||||||| ||||||||||||||||||  | | | || ||||||||||   |||||| | ||||||||||||| || ||    
T  2197509 ttctttttttagtagaaatgaaatagagtctgagtgatgagatgagat--gataacggaagaaagtgaacatattaagtagtattttatgttgggctcta 2197606  T
Q  143 atcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaa 242  Q
    || | || || || || | |||| || |||||  ||||| |||| ||||||||||||||| | |||||||| || ||||  ||||||  |||||||||||    
T  2197607 atttcgacct-aagcacaagtgtgtgcgaggaaggataatattagtaaaatggggagtgaagttagcatcggtttggttgatcggtttcttggatctcaa 2197705  T
Q  243 aattaaaaactaagaaccgaaccaaac 269  Q
    ||| ||||||  |||||| || |||||    
T  2197706 aatgaaaaaccgagaacccaatcaaac 2197732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 194
Target Start/End: Original strand, 2501939 - 2502038
Alignment:
Q  95 tgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatg 194  Q
    ||||||||||||| |||||||||| ||| |||||||||||| ||| |||| || |||||||||||| |||| | ||||||| ||||| || |||||||||    
T  2501939 tgatgggagaaagggaatgaattatgaagtattttatgttgcactgtaatttttagcttaatcataagtgtgtatgaggagggataatatcactaaaatg 2502038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 210 - 301
Target Start/End: Original strand, 21378567 - 21378657
Alignment:
Q  210 atcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttt 301  Q
    ||||||||||||  ||||||||||| |||||||||| ||||||| |||||||||||||||||  ||| ||| ||||| ||||||||| ||||    
T  21378567 atcgattcggttcatcggttctttgaatctcaaaat-aaaaactgagaaccgaaccaaactaggtcaatttcggttgattcggttcggtttt 21378657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 95 - 170
Target Start/End: Complemental strand, 49124514 - 49124439
Alignment:
Q  95 tgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtg 170  Q
    ||||||||||||||||||||| |||| | || |||||||||||||||||| ||||||||||| ||| |||| ||||    
T  49124514 tgatgggagaaagtgaatgaactaaggagtaatttatgttggactttaattttgagcttaatgataagtgtgtgtg 49124439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 2923183 - 2923122
Alignment:
Q  98 tgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcat 159  Q
    ||||||||||||||||||||||| | | ||||||||||||||||||| |||||| |||||||    
T  2923183 tgggagaaagtgaatgaattaagtagttttttatgttggactttaattttgagcctaatcat 2923122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 63 - 220
Target Start/End: Complemental strand, 32971558 - 32971397
Alignment:
Q  63 aaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcata-- 160  Q
    ||||||||| ||||||||||||||||||  | |||| | || | ||||||| |||||  | || |||||||||||||||||| |||||| ||||||||      
T  32971558 aaatagagtttgagtgatgagatgagat--gatgattgaagtaggtgaatggattaaagagtagtttatgttggactttaattttgagcctaatcataag 32971461  T
Q  161 ----ggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggt 220  Q
         |||| ||||||||| ||||| ||| | ||||||| |||||||| |||||||| ||||||    
T  32971460 tgtgtgtgtgtgtgaggagggataatatttcaaaaatggagagtgaggttagcatcggttcggt 32971397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 96 - 280
Target Start/End: Complemental strand, 46993545 - 46993361
Alignment:
Q  96 gatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatgg 195  Q
    |||| |||||| |||||| ||||| || ||||||||||||||||||||| ||| |||||| | || || | |||||||  |||||| |||| ||||||      
T  46993545 gatgagagaaattgaatggattaaaaagtattttatgttggactttaattttgggcttaaccttaagtttgtgtgaggtacgataatattagtaaaataa 46993446  T
Q  196 ggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagttt 280  Q
    |||||| || || |||||  | ||||  ||||||    ||||||| |||| |||||| | ||||| |||||||||| ||||||||    
T  46993445 ggagtgtggttatcatcggattggttaatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagatcagttt 46993361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 343
Target Start/End: Original strand, 46265156 - 46265439
Alignment:
Q  53 agtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagct 152  Q
    |||||||| |||||||||| ||||||||||||||||||     |||   ||||||| ||   |||||| | ||||||||||  | | ||||| ||| ||     
T  46265156 agtagaaatgaaatagagtttgagtgatgagatgagat-----gataatagaaagtaaactgattaagtagtattttatgtatggcattaattttgggca 46265250  T
Q  153 taatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaac 252  Q
    |||||||| ||||  |||||||  || || | || ||||||| ||||||  | || ||| |||| ||||  ||||||  |||||||||||||| | ||||    
T  46265251 taatcataagtgt--gtgaggaaggacaataatagtaaaatgaggagtggagttaacattgatttggttcatcggtttcttggatctcaaaatgacaaac 46265348  T
Q  253 taagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggttc 343  Q
    | | |||| |||||||| | ||| |||||| ||| ||||||||| |||| |||||||||  | || ||||||||| || | ||||||||||    
T  46265349 tgaaaaccaaaccaaacaagatcggtttagattgattcggttcggttttgaaccgaacccgacaaggtcggatacatttttggtttggttc 46265439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 224 - 296
Target Start/End: Original strand, 27226920 - 27226992
Alignment:
Q  224 tcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcg 296  Q
    ||||||| || ||||| |||||||||||| |||||||||||||||| |  || |||||| |||||||||||||    
T  27226920 tcggttccttagatcttaaaattaaaaaccaagaaccgaaccaaacaaggtcggtttagattggttcggttcg 27226992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 330
Target Start/End: Original strand, 22331994 - 22332100
Alignment:
Q  224 tcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcgg 323  Q
    |||||||||||||||||||||||||||||  | || ||||| |||||| |||  ||||||| |||| |||| | |||  ||||||||| || || || ||    
T  22331994 tcggttctttggatctcaaaattaaaaaccgaaaatcgaacaaaactagatcgatttaggtcggtttggtttggtttcaaaccgaaccaaaaaaggtggg 22332093  T
Q  324 atacttt 330  Q
    |||||||    
T  22332094 atacttt 22332100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 39571648 - 39571710
Alignment:
Q  53 agtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaatt 117  Q
    |||| |||||||||||| | ||||||||||||||||  ||| |||| ||||||||||||||||||    
T  39571648 agtataaacgaaatagattatgagtgatgagatgag--atgatgataggagaaagtgaatgaatt 39571710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 342
Target Start/End: Original strand, 7352396 - 7352504
Alignment:
Q  234 ggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctc 333  Q
    ||||||| |||| |||||| | ||||| |||||||||| | | |||| | ||||||||| ||| |||  |||| |||| |||||||||||||| ||| ||    
T  7352396 ggatctcgaaatgaaaaaccatgaaccaaaccaaactagaccggtttcgattggttcggatcggtttcaaaccaaaccaaataaagtcggatattttttc 7352495  T
Q  334 ggtttggtt 342  Q
    |||| ||||    
T  7352496 ggttcggtt 7352504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 311
Target Start/End: Complemental strand, 2923114 - 2923035
Alignment:
Q  232 ttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacc 311  Q
    |||||||||||||| |||||  |||||||||| ||||| |  || || ||| ||||||||||||| |||| |||||||||    
T  2923114 ttggatctcaaaatgaaaaatcaagaaccgaatcaaacaaggtcggtgtagattggttcggttcggttttgaaccgaacc 2923035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 362
Target Start/End: Original strand, 12013027 - 12013086
Alignment:
Q  303 aaccgaacctaataaagtcggatactttctcggtttggttccatttgagttttcgatttc 362  Q
    ||||||||| ||||| |||||||||||| |||||| ||||| |||| | |||||||||||    
T  12013027 aaccgaaccaaataaggtcggatactttttcggttcggttcaatttaaattttcgatttc 12013086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 252
Target Start/End: Original strand, 19602218 - 19602356
Alignment:
Q  114 aattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcg 213  Q
    |||||| || |||||||||||||  |||||  ||  || |||||||| || | ||||||||| || || |||| ||| ||| | ||||||| |||||||     
T  19602218 aattaataagtattttatgttgggatttaactttaggcataatcataagtttgtgtgaggagagaaaatattagtaatatgagaagtgaggttagcatct 19602317  T
Q  214 attcggtttgtcggttctttggatctcaaaattaaaaac 252  Q
     |||| ||  || ||||||||||||||||||| ||||||    
T  19602318 gttcgattcatctgttctttggatctcaaaataaaaaac 19602356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 272
Target Start/End: Complemental strand, 45595546 - 45595452
Alignment:
Q  178 ataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactat 272  Q
    |||| |||||||||||||||||||| | |||||||  |||| ||| |||| | |||| |||||||||||| ||    |||||| |||||||||||    
T  45595546 ataatattactaaaatggggagtgatgttagcatcagttcgatttatcggatatttgaatctcaaaattagaattcgagaaccaaaccaaactat 45595452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 326
Target Start/End: Complemental strand, 39695233 - 39695149
Alignment:
Q  242 aaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggata 326  Q
    |||| |||||| | ||||| ||||||||||||||||||| | ||||||| | ||| |||  ||||||||| || || ||||||||    
T  39695233 aaatgaaaaaccatgaaccaaaccaaactatatcagtttcgattggttcagatcggtttcaaaccgaaccaaacaaggtcggata 39695149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 9e-49; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 53 - 330
Target Start/End: Complemental strand, 11911921 - 11911648
Alignment:
Q  53 agtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttgg-actttaatcttgagc 151  Q
    |||| |||||||||||| | |||||||||||| |||||     |||||||||||| |||| ||||||  | ||||||||||||| |||||||| ||||||    
T  11911921 agtataaacgaaatagattatgagtgatgagacgagat-----gatgggagaaagcgaataaattaaacagtattttatgttgggactttaattttgagc 11911827  T
Q  152 ttaatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaa 251  Q
    ||||||||| ||||  |||| ||| ||||| |||||| ||||||||||||||  ||| |||| || ||||  ||||||| | |||| |||||||||||||    
T  11911826 ttaatcataagtgtgcgtgatgagggataatattactcaaatggggagtgagtttagtatcggtttggttcatcggttcatcggatttcaaaattaaaaa 11911727  T
Q  252 ctaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatacttt 330  Q
    | ||||||  || ||||||| ||| |||||||||||||||||||| |||| ||||||||| || || ||||||||||||    
T  11911726 ccaagaactaaatcaaactagatcggtttaggttggttcggttcggttttgaaccgaaccaaacaaggtcggatacttt 11911648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 39 - 269
Target Start/End: Original strand, 32678292 - 32678518
Alignment:
Q  39 agtgttctttgttcagtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggac 138  Q
    |||||||||| || ||||||||||||||||| | ||||||||||||||||||    ||||| |||||| ||||| ||||||  | |||||||||||| ||    
T  32678292 agtgttctttttt-agtagaaacgaaatagactatgagtgatgagatgagatca--tgatgtgagaaaatgaataaattaacgagtattttatgttg-ac 32678387  T
Q  139 tttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatc 238  Q
    |||||| ||||| ||||||||| |||| ||| | ||| ||||| |||||||||||||||||||||| |||||||  |||| ||  ||||||| |||||||    
T  32678388 tttaattttgagtttaatcataagtgtgtgttatgagggataatattactaaaatggggagtgaggttagcatcagttcgattcatcggttcattggatc 32678487  T
Q  239 tcaaaattaaaaactaagaaccgaaccaaac 269  Q
    ||||||||||||||  |||||||| ||||||    
T  32678488 tcaaaattaaaaaccgagaaccgagccaaac 32678518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 40 - 306
Target Start/End: Complemental strand, 17530954 - 17530691
Alignment:
Q  40 gtgttctttgttcagtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggact 139  Q
    ||||||||| || |||| |||||||||||||||||||  ||||||||||||     ||||||||||||||||||||||| ||| |||||| |||||||||    
T  17530954 gtgttctttttt-agtataaacgaaatagagtgtgaggaatgagatgagat-----gatgggagaaagtgaatgaatta-gaagtattttttgttggact 17530862  T
Q  140 t----taatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttgg 235  Q
    |    |||| ||||||||||||| | |||| ||||| ||  ||||| ||||||||||||| |||||| | |||||||| || ||||| | ||||||||||    
T  17530861 taatttaattttgagcttaatcacaagtgtgtgtgaagaaggataatattactaaaatggagagtgaagttagcatcggtttggtttattggttctttgg 17530762  T
Q  236 atctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaacc 306  Q
    || ||||||  |||| |  |||||||||||||| |||||| ||||  |||||||||||||| |||| ||||    
T  17530761 atatcaaaaaaaaaatcggagaaccgaaccaaattatatcggttttagttggttcggttcggttttaaacc 17530691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 215 - 362
Target Start/End: Complemental strand, 513131 - 512984
Alignment:
Q  215 ttcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaa 314  Q
    |||||||| ||||||  |||||||||||||||||||| |||||| |||| ||||||| ||| |||||||||||||||||| | |||| ||||||||| ||    
T  513131 ttcggtttatcggtttattggatctcaaaattaaaaattaagaatcgaatcaaactagatcggtttaggttggttcggtttggttttgaaccgaaccaaa 513032  T
Q  315 taaagtcggatactttctcggtttggttccatttgagttttcgatttc 362  Q
     ||  | ||||||||| |||||||||||| ||||| ||||| ||||||    
T  513031 caagattggatactttttcggtttggttcgatttgggtttttgatttc 512984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 226 - 330
Target Start/End: Original strand, 27320483 - 27320587
Alignment:
Q  226 ggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggat 325  Q
    ||||| |||||||||| ||||||||||  | ||||||||||||||| |||  || | |||||||||||| |||||| ||||||||| || || |||||||    
T  27320483 ggttcattggatctcataattaaaaaccgaaaaccgaaccaaactagatcttttaatgttggttcggtttgattttgaaccgaaccaaacaaggtcggat 27320582  T
Q  326 acttt 330  Q
    |||||    
T  27320583 acttt 27320587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 208 - 343
Target Start/End: Original strand, 8414579 - 8414714
Alignment:
Q  208 gcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccg 307  Q
    |||||| ||| |||| |||||||||||||||||||||||||||||  ||||  ||||||||||| ||  ||||| ||   ||||||||  |||| ||||     
T  8414579 gcatcggttcagtttatcggttctttggatctcaaaattaaaaaccgagaatagaaccaaactagattggtttatgtgtcttcggttcagttttgaacca 8414678  T
Q  308 aacctaataaagtcggatactttctcggtttggttc 343  Q
    |||| || || |||||||||||| ||||||| ||||    
T  8414679 aaccaaacaaggtcggatactttttcggttttgttc 8414714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 157
Target Start/End: Original strand, 8414385 - 8414499
Alignment:
Q  39 agtgttctttgttcagtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggac 138  Q
    |||||||||| || |||||||||||||||||||||||||||||||||  |  ||| |||||| | ||||||||||||||||  | |||||| |||| |||    
T  8414385 agtgttctttttt-agtagaaacgaaatagagtgtgagtgatgagatagg--atgatgatggtaaaaagtgaatgaattaaagagtatttt-tgtttgac 8414480  T
Q  139 tttaatcttgagcttaatc 157  Q
    ||| || ||||| ||||||    
T  8414481 tttgattttgagtttaatc 8414499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 339
Target Start/End: Complemental strand, 25785910 - 25785805
Alignment:
Q  234 ggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctc 333  Q
    ||||||| |||| |||||| | ||||| |||||||||||||| |||| | ||||||||| ||| |||  ||||||||| || || |||||||| ||| ||    
T  25785910 ggatctcgaaatgaaaaaccatgaaccaaaccaaactatatcggtttcgattggttcggatcggtttcaaaccgaaccaaacaaggtcggatattttttc 25785811  T
Q  334 ggtttg 339  Q
    ||||||    
T  25785810 ggtttg 25785805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 44581820 - 44581885
Alignment:
Q  224 tcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggtt 289  Q
    |||||| ||||||||||||||| |||||  |||||||||| ||||||| || ||||||||| ||||    
T  44581820 tcggttatttggatctcaaaataaaaaatcaagaaccgaatcaaactagattagtttaggtcggtt 44581885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 341
Target Start/End: Original strand, 4407741 - 4407904
Alignment:
Q  178 ataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcag 277  Q
    |||| |||| ||||||||| ||||  | || ||||| || ||||| || |||  |||||||||||||| ||||| | |||| |||||||||| | ||  |    
T  4407741 ataatattagtaaaatgggaagtggagttaacatcggtttggtttatcagtttcttggatctcaaaatgaaaaaatgagaatcgaaccaaacaagatatg 4407840  T
Q  278 tttaggttggttcggttcgatttttaaccgaacctaataaagtcggatactttctcggtttggt 341  Q
    ||||| || || ||||||| |||| |||||||||  | || |||| ||||||| ||| ||||||    
T  4407841 tttagattagtccggttcggttttgaaccgaaccagacaatgtcgaatactttttcgatttggt 4407904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 4919734 - 4919659
Alignment:
Q  63 aaatagagtgtgagtgatgagatgagat---atgctgatgggagaaagtgaatgaattaagaaatattttatgttg 135  Q
    ||||||||| | ||||||||||||||||   ||| ||| ||||||||||||||| || ||| | ||||||||||||    
T  4919734 aaatagagtctcagtgatgagatgagatgagatgatgaagggagaaagtgaatggatcaaggagtattttatgttg 4919659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 53 - 311
Target Start/End: Complemental strand, 6640 - 6397
Alignment:
Q  53 agtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagct 152  Q
    ||||||||||||||||||||||| |||||||||| |||  | |||||||||||||||||||||||||  | |||||||| ||| |||||||| |||||||    
T  6640 agtagaaacgaaatagagtgtgaatgatgagatgggat--gatgatgggagaaagtgaatgaattaaagagtattttatattg-actttaattttgagct 6544  T
Q  153 taatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaac 252  Q
    |||||||| |||| | |||| || ||||| ||||||| |||||||||||||| ||||||||||            ||| ||| |||||||||||||||||    
T  6543 taatcataagtgtgtatgagaagggataatattactagaatggggagtgaggttagcatcgat------------ttcattgtatctcaaaattaaaaac 6456  T
Q  253 taagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacc 311  Q
      ||||||  | ||||||| ||| ||||||||||||||| ||| ||||| |||||||||    
T  6455 cgagaaccagatcaaactagatcggtttaggttggttcgattcaattttaaaccgaacc 6397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 53 - 311
Target Start/End: Complemental strand, 14084 - 13828
Alignment:
Q  53 agtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagct 152  Q
    |||||||| ||||| |||| ||||||||||||||||||  | |||||| |||||||||||| |||||| | || |||||| ||| ||||||| ||| ||     
T  14084 agtagaaatgaaatcgagtctgagtgatgagatgagat--gatgatggaagaaagtgaatggattaagtagtactttatgctgggctttaattttgggca 13987  T
Q  153 taatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaac 252  Q
    || ||||| |||| ||||| |||  |||| | || ||||||||||||||||| |||||||| |||| ||  ||||||  |||||||||||||| ||||||    
T  13986 tactcataagtgtgtgtgaagaggtataataatagtaaaatggggagtgaggttagcatcggttcgattcatcggtttattggatctcaaaatgaaaaac 13887  T
Q  253 taagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacc 311  Q
      | |||| |||||||  | |||||||||| |||||||||||||||||| ||| |||||    
T  13886 cgataaccaaaccaaataagatcagtttagattggttcggttcgattttgaactgaacc 13828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 170
Target Start/End: Complemental strand, 34061 - 33946
Alignment:
Q  53 agtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagct 152  Q
    |||||||| ||||| |||| | |||||||| |||||||  | ||||||||||||||||||| |||||| | || |||||||||| ||||||| ||| ||     
T  34061 agtagaaatgaaatcgagtctaagtgatgacatgagat--gatgatgggagaaagtgaatggattaagtagtactttatgttgggctttaattttgggca 33964  T
Q  153 taatcataggtgtttgtg 170  Q
    || ||||| |||| ||||    
T  33963 tactcataagtgtgtgtg 33946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 344152 - 344363
Alignment:
Q  4 gcggtgaggaacaatggggtatgtgtgacttgcgg--agtgttctttgttcagtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatggg 101  Q
    |||||||||||| ||||| || |||||||| ||||  |||||||||| || ||||||||||||||||||| |||||||||||||||       ||||||     
T  344152 gcggtgaggaacgatgggttaggtgtgactggcggctagtgttctttttt-agtagaaacgaaatagagtatgagtgatgagatga-------tgatggc 344243  T
Q  102 agaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatggggagtg 201  Q
    ||||||||||| ||||||  |||||||||| |||||||||||| ||||||| ||||||| |||| |||||| |  ||||| || |||||||||| |||||    
T  344244 agaaagtgaattaattaatgaatattttatattggactttaattttgagctgaatcatatgtgtgtgtgagaatggataatataactaaaatggagagtg 344343  T
Q  202 aggctagcatcgattcggtt 221  Q
    ||| |||||| | |||||||    
T  344344 aggttagcattggttcggtt 344363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 39 - 290
Target Start/End: Complemental strand, 8513 - 8270
Alignment:
Q  39 agtgttctttgttcagtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggagaaagtgaatgaattaagaaatattttatgttggac 138  Q
    ||||||||||  | ||||||||  |||||||| ||||||||||||||||       |||||||||||||||||||||||||  | ||||| |||||||||    
T  8513 agtgttcttttcttagtagaaagtaaatagagcgtgagtgatgagatga-------tgatgggagaaagtgaatgaattaaagagtattt-atgttggac 8422  T
Q  139 tttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatggggagtgaggctagcatcgattcggtttgtcggttctttggatc 238  Q
    |||||| ||||| || |||| | |||| ||||||||| ||||| ||||| |||||| ||||||||| ||||| |  |||||||  |||| ||||||||||    
T  8421 tttaattttgagtttgatcaaaagtgtgtgtgaggagggataatattaccaaaatgcggagtgaggttagcaccagttcggttcatcggctctttggatc 8322  T
Q  239 tcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttc 290  Q
    | |||||  ||||   ||||||||||||||||| |||  |||||||||||||    
T  8321 taaaaatacaaaatcgagaaccgaaccaaactagatcgatttaggttggttc 8270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 96 - 311
Target Start/End: Original strand, 469 - 684
Alignment:
Q  96 gatgggagaaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgaggagcgataaaattactaaaatgg 195  Q
    |||| ||||||||||||| ||||| || ||||||||||||||||||||| |||||| ||| |||| || | |||||||   ||||| |||| ||||||      
T  469 gatgagagaaagtgaatggattaaaaagtattttatgttggactttaattttgagcctaaccataagtttgtgtgaggtaggataatattagtaaaataa 568  T
Q  196 ggagtgaggctagcatcgattcggtttgtcggttctttggatctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttc 295  Q
    |||||| || || |||||  | ||||  ||||||    |||||||||||| |||||| | ||||| || ||||||| ||| ||||   ||||||||| ||    
T  569 ggagtgtggttatcatcggattggttcatcggtttcacggatctcaaaatgaaaaaccatgaaccaaatcaaactagatcggtttcaattggttcggatc 668  T
Q  296 gatttttaaccgaacc 311  Q
    | |||  |||||||||    
T  669 ggtttcaaaccgaacc 684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1194 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold1194
Description:

Target: scaffold1194; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 2347 - 2471
Alignment:
Q  6 ggtgaggaacaatggggtatgtgtgacttgcgg--agtgttctttgttcagtagaaacgaaatagagtgtgagtgatgagatgagatatgctgatgggag 103  Q
    |||||| ||| ||||| || |||||||| ||||  |||||||||| ||| ||||||||  |||||||||||||||| ||||||||  ||| |||||| ||    
T  2347 ggtgagaaacgatgggttaggtgtgactggcggttagtgttcttttttc-gtagaaacagaatagagtgtgagtgacgagatgag--atgatgatggcag 2443  T
Q  104 aaagtgaatgaattaagaaatattttat 131  Q
    |||||||| |||||||| | ||||||||    
T  2444 aaagtgaacgaattaaggagtattttat 2471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1335 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold1335
Description:

Target: scaffold1335; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 104 - 213
Target Start/End: Original strand, 849 - 960
Alignment:
Q  104 aaagtgaatgaattaagaaatattttatgttggactttaatcttgagcttaatcataggtgtttgtgag--gagcgataaaattactaaaatggggagtg 201  Q
    |||||||||||||||| || ||| |||||||||| |||||| ||  || ||||||||  ||| ||||||  ||| ||||| |||| |||||||| |||||    
T  849 aaagtgaatgaattaaaaagtatattatgttggattttaattttaggcctaatcataaatgtgtgtgagatgagagataatattaataaaatggagagtg 948  T
Q  202 aggctagcatcg 213  Q
    ||| ||||||||    
T  949 aggttagcatcg 960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 326
Target Start/End: Original strand, 1873 - 1963
Alignment:
Q  236 atctcaaaattaaaaactaagaaccgaaccaaactatatcagtttaggttggttcggttcgatttttaaccgaacctaataaagtcggata 326  Q
    ||||| ||||||||||| | ||||| ||||||| || |||||||| | ||||||| | |||||||  ||||||||| || || ||||||||    
T  1873 atctcgaaattaaaaaccatgaaccaaaccaaagtagatcagttttgattggttccgatcgatttcaaaccgaaccaaacaaggtcggata 1963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 1735 - 1784
Alignment:
Q  95 tgatgggagaaagtgaatgaattaagaaatattttatgttggactttaat 144  Q
    ||||| ||||||||||||| ||||| || |||||||||||||| ||||||    
T  1735 tgatgagagaaagtgaatggattaaaaagtattttatgttggattttaat 1784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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