View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9023_low_1 (Length: 872)

Name: NF9023_low_1
Description: NF9023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9023_low_1
NF9023_low_1
[»] chr8 (8 HSPs)
chr8 (18-471)||(32736412-32736865)
chr8 (617-862)||(32736867-32737112)
chr8 (127-198)||(16972019-16972090)
chr8 (122-174)||(32927946-32927998)
chr8 (126-198)||(18123284-18123356)
chr8 (124-176)||(31761150-31761202)
chr8 (128-180)||(36200102-36200154)
chr8 (127-174)||(38868802-38868849)
[»] chr5 (6 HSPs)
chr5 (122-198)||(6951260-6951336)
chr5 (125-198)||(31906316-31906389)
chr5 (122-167)||(42858162-42858207)
chr5 (122-200)||(14299384-14299458)
chr5 (127-182)||(34443034-34443089)
chr5 (127-176)||(28031151-28031200)
[»] chr4 (15 HSPs)
chr4 (122-181)||(31360928-31360987)
chr4 (122-180)||(33347143-33347201)
chr4 (128-181)||(4905855-4905908)
chr4 (501-607)||(25224467-25224573)
chr4 (122-186)||(8604589-8604653)
chr4 (122-162)||(16552009-16552049)
chr4 (123-198)||(25927361-25927436)
chr4 (127-162)||(26911798-26911833)
chr4 (555-593)||(6170992-6171030)
chr4 (127-168)||(22250285-22250326)
chr4 (122-167)||(32818356-32818401)
chr4 (122-167)||(33456426-33456471)
chr4 (126-167)||(41751258-41751299)
chr4 (135-176)||(52342023-52342064)
chr4 (132-177)||(53713537-53713582)
[»] chr2 (5 HSPs)
chr2 (127-198)||(16518837-16518908)
chr2 (122-174)||(33019135-33019187)
chr2 (122-198)||(5532986-5533062)
chr2 (122-174)||(11504041-11504093)
chr2 (129-174)||(38074470-38074515)
[»] chr6 (6 HSPs)
chr6 (122-186)||(8860558-8860622)
chr6 (130-174)||(3482108-3482152)
chr6 (123-198)||(434192-434267)
chr6 (131-174)||(994021-994064)
chr6 (127-185)||(8856366-8856424)
chr6 (136-185)||(4894002-4894051)
[»] chr1 (12 HSPs)
chr1 (511-596)||(36795156-36795241)
chr1 (130-198)||(34915128-34915196)
chr1 (127-198)||(11817272-11817343)
chr1 (122-198)||(7524167-7524243)
chr1 (122-174)||(30557556-30557608)
chr1 (127-180)||(30850368-30850425)
chr1 (122-174)||(34721819-34721871)
chr1 (127-198)||(35961427-35961498)
chr1 (127-158)||(47321902-47321933)
chr1 (122-175)||(1514397-1514450)
chr1 (127-180)||(2555960-2556013)
chr1 (122-167)||(3016216-3016261)
[»] chr7 (7 HSPs)
chr7 (122-198)||(45557419-45557495)
chr7 (122-198)||(25156254-25156330)
chr7 (122-198)||(40491632-40491708)
chr7 (122-181)||(42816440-42816499)
chr7 (126-172)||(46344650-46344696)
chr7 (31-76)||(22310787-22310832)
chr7 (559-596)||(28059752-28059789)
[»] chr3 (5 HSPs)
chr3 (122-173)||(31708219-31708270)
chr3 (122-181)||(43661893-43661952)
chr3 (123-181)||(34331699-34331757)
chr3 (127-176)||(46551245-46551294)
chr3 (500-597)||(49443391-49443488)


Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 471
Target Start/End: Original strand, 32736412 - 32736865
Alignment:
Q  18 ctatttataaagaagctaaaatttattctaaagatgtaaaattgatttgaatatgtttgcttgaaattaagatttgtagnnnnnnnnnnnnnnnnnnnnn 117  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||                         
T  32736412 ctatttttaaagaagctaaaattgattctaaagatgtaaaattgatttgaatatgtttgcttgaaattaagatttgtagttttttattttaaaattaatt 32736511  T
Q  118 nnnncacataaatttatagttcaattcacttttacatgaatgtattcaaatacaaattattttacctttgactcacttttatcataataacacattgcag 217  Q
        |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32736512 tttacacacaaatttatagttcaattcacttttacatgaatgtattcaaatacaaattattttacctttgactcacttttatcataataacacattgcag 32736611  T
Q  218 aatcaattcatttaaaaccaaacatacaatataaaatgttaatatgcaaaaggttgtaaatacatttaatgtatcggtgtgtatgttcgaatttacaata 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32736612 aatcaattcatttaaaaccaaacatacaatataaaatgttaatatgcaaaaggttgtaaatacatttaatgtatcggtatgtatgttcgaatttacaata 32736711  T
Q  318 cctctcttctcctcaataatatatgtagattgtgttgtttgtctctttggnnnnnnnccaaaatcaatttaataaaccgttaaaaacctacatgtattgc 417  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||       ||||||||||||||||||||||||||||||||||||| |||||    
T  32736712 cctctcttctcctcaataatatatgtagattgtgttgtttgcctctttggaacaaaaccaaaatcaatttaataaaccgttaaaaacctacatgaattgc 32736811  T
Q  418 atgtttgatatcacattgacccatagtaatttctaaaaactctaatataaaaca 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32736812 atgtttgatatcacattgacccatagtaatttctaaaaactctaatataaaaca 32736865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 617 - 862
Target Start/End: Original strand, 32736867 - 32737112
Alignment:
Q  617 tttttatgcggctatatactactactgtataatttattttaaaacattgtatgttcggtcaattgagtgtacataaattcaactcaacccccattcctct 716  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32736867 tttttttgcggctatatactactactatataatttattttaaaacattgtatgttcggtcaattgagtgtacataaattcaactcaacccccattcctct 32736966  T
Q  717 tgtcatgtggtaacccttttttcatgtggtaacactgcaatgcccaactaggaaacattccatacttccaatggtgttgagctttcatctctaccactaa 816  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32736967 tgtcatgtggtaacccttttttcatgtggtaacactgcaatgcccaactaggaaacattccatacttccaatggttttgagctttcatctctaccactaa 32737066  T
Q  817 gcaatcctctttcccacttgtctataattaggcgaatctctgcttc 862  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||    
T  32737067 gcaaccctctttcccacttgtctataattaggcgaatctatgcttc 32737112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 16972090 - 16972019
Alignment:
Q  127 aaatttatagttcaattcacttttacatgaatgtattcaaatacaaattattttacctttgactcactttta 198  Q
    |||||||| |||||| ||||||||||||||||||||||||| |||||| ||||||||||  |||||||||||    
T  16972090 aaatttattgttcaaatcacttttacatgaatgtattcaaacacaaatcattttaccttcaactcactttta 16972019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 32927946 - 32927998
Alignment:
Q  122 cacataaatttatagttcaattcacttttacatgaatgtattcaaatacaaat 174  Q
    |||| ||||||||||||||| |||||||||||||||||||| |||| ||||||    
T  32927946 cacacaaatttatagttcaactcacttttacatgaatgtatccaaacacaaat 32927998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 18123284 - 18123356
Alignment:
Q  126 taaatttatagttcaattcacttttacatgaatgtattcaaatacaaattattttacctttgactcactttta 198  Q
    |||| ||||||||||| |||||||||||| ||| ||||| || |||||| ||||||||||  | |||||||||    
T  18123284 taaagttatagttcaactcacttttacataaatatattccaacacaaatcattttaccttcaattcactttta 18123356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 31761202 - 31761150
Alignment:
Q  124 cataaatttatagttcaattcacttttacatgaatgtattcaaatacaaatta 176  Q
    ||||||||||| |||||||||||||||| ||||| |||| |||||| ||||||    
T  31761202 cataaatttatcgttcaattcacttttatatgaacgtatacaaataaaaatta 31761150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 36200154 - 36200102
Alignment:
Q  128 aatttatagttcaattcacttttacatgaatgtattcaaatacaaattatttt 180  Q
    |||||||| ||||||||||||||||||||||||||| ||  |||||| |||||    
T  36200154 aatttataattcaattcacttttacatgaatgtattgaagcacaaatcatttt 36200102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 38868802 - 38868849
Alignment:
Q  127 aaatttatagttcaattcacttttacatgaatgtattcaaatacaaat 174  Q
    ||||||||||||| | ||||||||||||||| ||||||||||| ||||    
T  38868802 aaatttatagttctactcacttttacatgaacgtattcaaatataaat 38868849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 6951336 - 6951260
Alignment:
Q  122 cacataaatttatagttcaattcacttttacatgaatgtattcaaatacaaattattttacctttgactcactttta 198  Q
    |||||||||||||| |||||||||||||||||||||| ||| ||||||||| | ||||||| || ||||||||||||    
T  6951336 cacataaatttataattcaattcacttttacatgaatttatccaaatacaagtcattttactttcgactcactttta 6951260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 31906316 - 31906389
Alignment:
Q  125 ataaatttatagttcaattcacttttacatgaatgtattcaaatacaaattattttacctttgactcactttta 198  Q
    ||||||||||||||||| ||||||||||||||||  || | || |||||||||||||||||| ||||| |||||    
T  31906316 ataaatttatagttcaactcacttttacatgaattcatccgaaaacaaattattttacctttaactcaatttta 31906389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 42858162 - 42858207
Alignment:
Q  122 cacataaatttatagttcaattcacttttacatgaatgtattcaaa 167  Q
    |||| ||||||||||||||| |||||||||||||||| ||||||||    
T  42858162 cacacaaatttatagttcaactcacttttacatgaatttattcaaa 42858207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 14299384 - 14299458
Alignment:
Q  122 cacataaatttatagttcaattcacttttacatgaatgtattcaaatacaaattattttacctttgactcacttttatc 200  Q
    |||||||||||||||||| |||||| |||||||   |||||||||| |||||| | ||||||||  |||||||||||||    
T  14299384 cacataaatttatagttcgattcac-tttacat---tgtattcaaacacaaatcactttaccttcaactcacttttatc 14299458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 34443034 - 34443089
Alignment:
Q  127 aaatttatagttcaattcacttttacatgaatgtattcaaatacaaattattttac 182  Q
    ||||||||  ||||||||||||||| || |||||||||||| | ||||||||||||    
T  34443034 aaatttatttttcaattcacttttatataaatgtattcaaacataaattattttac 34443089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 28031200 - 28031151
Alignment:
Q  127 aaatttatagttcaattcacttttacatgaatgtattcaaatacaaatta 176  Q
    |||||||||| |||| | ||||||||||||||||||||||| || |||||    
T  28031200 aaatttatagatcaacttacttttacatgaatgtattcaaacactaatta 28031151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 31360987 - 31360928
Alignment:
Q  122 cacataaatttatagttcaattcacttttacatgaatgtattcaaatacaaattatttta 181  Q
    ||||||||| ||||||||||  ||||||||||||||||| ||||||||||||||||||||    
T  31360987 cacataaatgtatagttcaacccacttttacatgaatgtgttcaaatacaaattatttta 31360928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 33347201 - 33347143
Alignment:
Q  122 cacataaatttatagttcaattcacttttacatgaatgtattcaaatacaaattatttt 180  Q
    |||| |||| ||||||||||||||||||||||||| |||||||||| | ||||||||||    
T  33347201 cacacaaatatatagttcaattcacttttacatgattgtattcaaacaaaaattatttt 33347143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 4905908 - 4905855
Alignment:
Q  128 aatttatagttcaattcacttttacatgaatgtattcaaatacaaattatttta 181  Q
    |||||| |||||||| ||||||||||| |||||||||||| |||||||||||||    
T  4905908 aatttacagttcaatccacttttacataaatgtattcaaacacaaattatttta 4905855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 501 - 607
Target Start/End: Complemental strand, 25224573 - 25224467
Alignment:
Q  501 agctcacatatttaaatatgaagaagtggattgtccataattcgaactatgtctcctacataaattatgcaatgtccctcctaattgagttaaactctcg 600  Q
    |||||||| || |||||||||||||||||  |||||    ||||||||  | | ||| ||||||||||||||||||||| | | ||||||||| ||||||    
T  25224573 agctcacacatataaatatgaagaagtggggtgtccgaggttcgaactccgacccctgcataaattatgcaatgtccctaccagttgagttaagctctcg 25224474  T
Q  601 aggacga 607  Q
     ||||||    
T  25224473 gggacga 25224467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 8604653 - 8604589
Alignment:
Q  122 cacataaatttatagttcaattcacttttacatgaatgtattcaaatacaaattattttaccttt 186  Q
    |||| |||||||||||| ||| ||||||||||||||||||| |||| | |||| | |||||||||    
T  8604653 cacacaaatttatagttgaatgcacttttacatgaatgtatccaaacataaatcactttaccttt 8604589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 16552009 - 16552049
Alignment:
Q  122 cacataaatttatagttcaattcacttttacatgaatgtat 162  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  16552009 cacacaaatttatagttcaactcacttttacatgaatgtat 16552049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 25927361 - 25927436
Alignment:
Q  123 acataaatttatagttcaattcacttttacatgaatgtattcaaatacaaattattttacctttgactcactttta 198  Q
    |||||||||||| | ||||||||||||||| |||||||||  ||||| |||  ||||||| ||  |||||||||||    
T  25927361 acataaatttatggctcaattcacttttacgtgaatgtatcgaaatataaaacattttactttcaactcactttta 25927436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 162
Target Start/End: Complemental strand, 26911833 - 26911798
Alignment:
Q  127 aaatttatagttcaattcacttttacatgaatgtat 162  Q
    |||||||||||| |||||||||||||||||||||||    
T  26911833 aaatttatagtttaattcacttttacatgaatgtat 26911798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 555 - 593
Target Start/End: Original strand, 6170992 - 6171030
Alignment:
Q  555 cctacataaattatgcaatgtccctcctaattgagttaa 593  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  6170992 cctacataaattatgcaatgtccctaccaattgagttaa 6171030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 22250285 - 22250326
Alignment:
Q  127 aaatttatagttcaattcacttttacatgaatgtattcaaat 168  Q
    |||||||| |||| |||||||||||||||||||||| |||||    
T  22250285 aaatttattgttcgattcacttttacatgaatgtatccaaat 22250326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 32818401 - 32818356
Alignment:
Q  122 cacataaatttatagttcaattcacttttacatgaatgtattcaaa 167  Q
    |||| ||||||||||||||| | |||||||||||||||||| ||||    
T  32818401 cacacaaatttatagttcaactaacttttacatgaatgtatccaaa 32818356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 33456426 - 33456471
Alignment:
Q  122 cacataaatttatagttcaattcacttttacatgaatgtattcaaa 167  Q
    ||||||||| ||||||||||||||||||||||  || |||||||||    
T  33456426 cacataaatctatagttcaattcacttttacacaaaagtattcaaa 33456471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 41751299 - 41751258
Alignment:
Q  126 taaatttatagttcaattcacttttacatgaatgtattcaaa 167  Q
    ||||||||| ||| |||||| |||||||||||||||||||||    
T  41751299 taaatttattgtttaattcagttttacatgaatgtattcaaa 41751258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 52342023 - 52342064
Alignment:
Q  135 agttcaattcacttttacatgaatgtattcaaatacaaatta 176  Q
    ||||||| ||| ||||||||||||||||||||| ||||||||    
T  52342023 agttcaactcatttttacatgaatgtattcaaacacaaatta 52342064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 53713582 - 53713537
Alignment:
Q  132 tatagttcaattcacttttacatgaatgtattcaaatacaaattat 177  Q
    |||||||||| |||||||||||||||||| | |||| |||||||||    
T  53713582 tatagttcaactcacttttacatgaatgtgtccaaacacaaattat 53713537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 16518837 - 16518908
Alignment:
Q  127 aaatttatagttcaattcacttttacatgaatgtattcaaatacaaattattttacctttgactcactttta 198  Q
    ||||||||||||||| |||||||||||||||||||| |||| |||||| |||||||| |  |||||||||||    
T  16518837 aaatttatagttcaactcacttttacatgaatgtatccaaacacaaatcattttaccctcaactcactttta 16518908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 33019187 - 33019135
Alignment:
Q  122 cacataaatttatagttcaattcacttttacatgaatgtattcaaatacaaat 174  Q
    |||||||||||||||||||| ||||||||||||||||| || |||| ||||||    
T  33019187 cacataaatttatagttcaactcacttttacatgaatgcatccaaacacaaat 33019135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 5533062 - 5532986
Alignment:
Q  122 cacataaatttatagttcaattcacttttacatgaatgtattcaaatacaaattattttacctttgactcactttta 198  Q
    |||||||||||||| ||||| |||| |||||||||| |||| |||| |||||| | ||||| | | |||||||||||    
T  5533062 cacataaatttataattcaactcacatttacatgaacgtatccaaaaacaaataagtttacttgtaactcactttta 5532986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 11504093 - 11504041
Alignment:
Q  122 cacataaatttatagttcaattcacttttacatgaatgtattcaaatacaaat 174  Q
    |||| ||| ||||||||||| ||||||||||||||||||||| ||| ||||||    
T  11504093 cacacaaagttatagttcaactcacttttacatgaatgtattaaaacacaaat 11504041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 38074470 - 38074515
Alignment:
Q  129 atttatagttcaattcacttttacatgaatgtattcaaatacaaat 174  Q
    |||||| |||||| |||||||||||| |||||||| ||||||||||    
T  38074470 atttattgttcaactcacttttacataaatgtatttaaatacaaat 38074515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 8860558 - 8860622
Alignment:
Q  122 cacataaatttatagttcaattcacttttacatgaatgtattcaaatacaaattattttaccttt 186  Q
    ||||||||||||| |||||| |||||||| |||||||||||  ||| ||||||||||||||||||    
T  8860558 cacataaatttatggttcaactcacttttgcatgaatgtatctaaacacaaattattttaccttt 8860622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 3482108 - 3482152
Alignment:
Q  130 tttatagttcaattcacttttacatgaatgtattcaaatacaaat 174  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||    
T  3482108 tttatagttcaacttacttttacatgaatgtattcaaacacaaat 3482152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 198
Target Start/End: Complemental strand, 434267 - 434192
Alignment:
Q  123 acataaatttatagttcaattcacttttacatgaatgtattcaaatacaaattattttacctttgactcactttta 198  Q
    ||||||||||| | ||||| ||||||||||| |||| ||| |||| |||||| |||||||||   |||||||||||    
T  434267 acataaatttaaatttcaactcacttttacacgaatatatccaaacacaaatcattttacctgcaactcactttta 434192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 174
Target Start/End: Original strand, 994021 - 994064
Alignment:
Q  131 ttatagttcaattcacttttacatgaatgtattcaaatacaaat 174  Q
    |||| |||||||||||||||| ||||||||||| ||||||||||    
T  994021 ttattgttcaattcacttttatatgaatgtatttaaatacaaat 994064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 8856366 - 8856424
Alignment:
Q  127 aaatttatagttcaattcacttttacatgaatgtattcaaatacaaattattttacctt 185  Q
    ||||||||  ||||| ||||||| |||||||||||| |||| |||||| ||||||||||    
T  8856366 aaatttatgtttcaactcactttcacatgaatgtatccaaacacaaatcattttacctt 8856424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 4894002 - 4894051
Alignment:
Q  136 gttcaattcacttttacatgaatgtattcaaatacaaattattttacctt 185  Q
    |||||||||| |||||||| ||| |||||||| | |||||||||||||||    
T  4894002 gttcaattcatttttacataaatatattcaaacataaattattttacctt 4894051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 511 - 596
Target Start/End: Complemental strand, 36795241 - 36795156
Alignment:
Q  511 tttaaatatgaagaagtggattgtccataattcgaactatgtctcctacataaattatgcaatgtccctcctaattgagttaaact 596  Q
    |||||||||| |||||| || ||| || ||||||||  ||| |||||||||| |||||||||||||| |  |||||||||||||||    
T  36795241 tttaaatatggagaagttgagtgttcagaattcgaaacatgactcctacatatattatgcaatgtccttaataattgagttaaact 36795156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 34915128 - 34915196
Alignment:
Q  130 tttatagttcaattcacttttacatgaatgtattcaaatacaaattattttacctttgactcactttta 198  Q
    |||||| ||||| ||||||||||||||||||||||||| | |||| |||||||||   |||||||||||    
T  34915128 tttataattcaactcacttttacatgaatgtattcaaacataaatcattttacctgcaactcactttta 34915196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 11817343 - 11817272
Alignment:
Q  127 aaatttatagttcaattcacttttacatgaatgtattcaaatacaaattattttacctttgactcactttta 198  Q
    ||||||||||||||| | |||||||||| |||||||||||||| |||| |||||| |||  |||| ||||||    
T  11817343 aaatttatagttcaactaacttttacattaatgtattcaaataaaaatcattttatcttcaactcgctttta 11817272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 7524167 - 7524243
Alignment:
Q  122 cacataaatttatagttcaattcacttttacatgaatgtattcaaatacaaattattttacctttgactcactttta 198  Q
    |||| ||||||||||||||| |||||||||||| ||||| | |||| |||||| | ||||||||   ||||||||||    
T  7524167 cacacaaatttatagttcaactcacttttacataaatgtgtccaaacacaaatcactttaccttgagctcactttta 7524243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 30557556 - 30557608
Alignment:
Q  122 cacataaatttatagttcaattcacttttacatgaatgtattcaaatacaaat 174  Q
    |||| ||||||||||||||| ||||||||| |||||||||| |||| ||||||    
T  30557556 cacacaaatttatagttcaactcacttttatatgaatgtatccaaacacaaat 30557608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 30850425 - 30850368
Alignment:
Q  127 aaatttatagttcaattcacttttacatg----aatgtattcaaatacaaattatttt 180  Q
    ||||||||||||||| |||||||||||||    ||||||||||||||||||| |||||    
T  30850425 aaatttatagttcaactcacttttacatgaatgaatgtattcaaatacaaatcatttt 30850368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 34721871 - 34721819
Alignment:
Q  122 cacataaatttatagttcaattcacttttacatgaatgtattcaaatacaaat 174  Q
    |||| ||||||||||||| | | |||||||||| |||||||||||||||||||    
T  34721871 cacacaaatttatagttcgacttacttttacatcaatgtattcaaatacaaat 34721819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 35961427 - 35961498
Alignment:
Q  127 aaatttatagttcaattcacttttacatgaatgtattcaaatacaaattattttacctttgactcactttta 198  Q
    ||||||| | ||||| ||||||||||||||||||||  ||| | |||| ||||||||||  |||||||||||    
T  35961427 aaatttaaaattcaactcacttttacatgaatgtatagaaacataaatcattttaccttcaactcactttta 35961498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 158
Target Start/End: Complemental strand, 47321933 - 47321902
Alignment:
Q  127 aaatttatagttcaattcacttttacatgaat 158  Q
    ||||||||||||||||||||||||||||||||    
T  47321933 aaatttatagttcaattcacttttacatgaat 47321902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 1514397 - 1514450
Alignment:
Q  122 cacataaatttatagttcaattcacttttacatgaatgtattcaaatacaaatt 175  Q
    |||| |||||||| |||||| ||| |||||||||||||||| |||| |||||||    
T  1514397 cacacaaatttattgttcaactcatttttacatgaatgtatccaaacacaaatt 1514450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 2555960 - 2556013
Alignment:
Q  127 aaatttatagttcaattcacttttacatgaatgtattcaaatacaaattatttt 180  Q
    ||||||||| ||||| ||||||||||||||||  || ||||||||| |||||||    
T  2555960 aaatttataattcaactcacttttacatgaatacatccaaatacaacttatttt 2556013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 3016216 - 3016261
Alignment:
Q  122 cacataaatttatagttcaattcacttttacatgaatgtattcaaa 167  Q
    ||||||||||||  |||||| |||||||||||||||||||| ||||    
T  3016216 cacataaatttacggttcaactcacttttacatgaatgtatccaaa 3016261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 45557419 - 45557495
Alignment:
Q  122 cacataaatttatagttcaattcacttttacatgaatgtattcaaatacaaattattttacctttgactcactttta 198  Q
    |||| |||||| ||| |||| |||||||||||||||||||| |||| |||||| | ||||||||  |||||||||||    
T  45557419 cacacaaatttgtagctcaactcacttttacatgaatgtatccaaacacaaatcactttaccttcaactcactttta 45557495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 25156254 - 25156330
Alignment:
Q  122 cacataaatttatagttcaattcacttttacatgaatgtattcaaatacaaattattttacctttgactcactttta 198  Q
    |||||||||| |||  |||| ||||||||| ||||||||||||||| |||||| |||||| |||  ||||| |||||    
T  25156254 cacataaattaataaatcaactcacttttatatgaatgtattcaaacacaaatcattttatcttcaactcattttta 25156330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 40491632 - 40491708
Alignment:
Q  122 cacataaatttatagttcaattcacttttacatgaatgtattcaaatacaaattattttacctttgactcactttta 198  Q
    |||| ||||||| |||| || |||||||||||||||||||| |||| | |||| | ||||||||  |||||||||||    
T  40491632 cacacaaatttaaagtttaactcacttttacatgaatgtatccaaaaataaatcactttaccttcaactcactttta 40491708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 42816499 - 42816440
Alignment:
Q  122 cacataaatttatagttcaattcacttttacatgaatgtattcaaatacaaattatttta 181  Q
    |||| ||||||||| |||||||||||| ||||||||||||| |||| ||| || ||||||    
T  42816499 cacacaaatttataattcaattcacttctacatgaatgtatgcaaacacatatcatttta 42816440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 46344650 - 46344696
Alignment:
Q  126 taaatttatagttcaattcacttttacatgaatgtattcaaatacaa 172  Q
    ||||||||| ||| ||||||||||| ||| |||||||||||||||||    
T  46344650 taaatttattgtttaattcacttttgcataaatgtattcaaatacaa 46344696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 22310832 - 22310787
Alignment:
Q  31 agctaaaatttattctaaagatgtaaaattgatttgaatatgtttg 76  Q
    |||||||||| |||||||||||||| |||||||||  |||||||||    
T  22310832 agctaaaattgattctaaagatgtataattgattttgatatgtttg 22310787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 596
Target Start/End: Complemental strand, 28059789 - 28059752
Alignment:
Q  559 cataaattatgcaatgtccctcctaattgagttaaact 596  Q
    |||||||||||||||||||||  |||||||||||||||    
T  28059789 cataaattatgcaatgtccctgttaattgagttaaact 28059752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 31708270 - 31708219
Alignment:
Q  122 cacataaatttatagttcaattcacttttacatgaatgtattcaaatacaaa 173  Q
    |||| ||||||||| ||||| |||||||||||||||||||| |||| |||||    
T  31708270 cacacaaatttataattcaactcacttttacatgaatgtatccaaacacaaa 31708219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 43661893 - 43661952
Alignment:
Q  122 cacataaatttatagttcaattcacttttacatgaatgtattcaaatacaaattatttta 181  Q
    ||||||||| ||| |||||| ||||||||||||||||||||  ||| | |||||||||||    
T  43661893 cacataaatgtattgttcaactcacttttacatgaatgtataaaaacataaattatttta 43661952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 34331699 - 34331757
Alignment:
Q  123 acataaatttatagttcaattcacttttacatgaatgtattcaaatacaaattatttta 181  Q
    ||||||| ||| | ||||||||||||||| || |||||||||||| |||||||| ||||    
T  34331699 acataaagttaaaattcaattcacttttatataaatgtattcaaacacaaattacttta 34331757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 46551294 - 46551245
Alignment:
Q  127 aaatttatagttcaattcacttttacatgaatgtattcaaatacaaatta 176  Q
    |||||||||| |||| ||||||||| ||||||||||||||| | ||||||    
T  46551294 aaatttatagctcaactcacttttatatgaatgtattcaaacaaaaatta 46551245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 597
Target Start/End: Original strand, 49443391 - 49443488
Alignment:
Q  500 gagctcacatatttaaatatgaagaagtggattgtccataattcgaactatgtctcctacataaattatgcaatgtccctcctaattgagttaaactc 597  Q
    ||||||||| |||||||| || ||||||||  |||||    ||||||||  | | ||| ||||||||||||||||||||| | ||||||| |||||||    
T  49443391 gagctcacacatttaaatgtggagaagtggggtgtccggggttcgaactccggcccctgcataaattatgcaatgtccctgccaattgagctaaactc 49443488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University