View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9023_low_12 (Length: 580)
Name: NF9023_low_12
Description: NF9023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9023_low_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 20 - 580
Target Start/End: Original strand, 40186718 - 40187281
Alignment:
| Q |
20 |
gctaagacactaagaactaagctataaagtgaagaacttggcatataaaccattgtttctgagtgacccagttgnnnnnnnnnnnnncttt--gtggttt |
117 |
Q |
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| T |
40186718 |
gctaagacactaagaactaagctataaagtgaagaacttggcatataaaccattgtttctgagtgacccagttgaaaaaagaaaaaactttatgtggttt |
40186817 |
T |
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| Q |
118 |
atgatccaatcgcttcaaaaacgtaaacaacagtttcatgggttaaagatggacgatattgtttttctaactcattctctaacttttcaaaccattcgtt |
217 |
Q |
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| T |
40186818 |
atgatccaatcgcttcaaaaacgtaaacaacagtttcatgggttaaagatggacgatattgtttttctaactcattctctaacttttcagaccattcgtt |
40186917 |
T |
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| Q |
218 |
tttataaacaagctgtaaaatagagtctggtttcaaagatgaaaaatagagtttttgttaaaaacgtaacaaagaagaaatcgatggattcacctggttc |
317 |
Q |
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| T |
40186918 |
tttataaacaagctgtaaaatagagtctggtttcaaagatgaaaaatagagtttttgttgaaaacgtaacaaaaaagaaatcgatggatttacctggtta |
40187017 |
T |
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| Q |
318 |
tgagttgcaagaattcgtgtagctattgccttcacacggttcatcgcaaaagatgaaattgttgcgcgacacaacaccaacgtaagtgtagtgtagttgc |
417 |
Q |
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| T |
40187018 |
tgagttgcaagaattcgtgtagctattgccttcacacggttcatcgcaaaagatgaaattgttgcgcgacacaacaccaacgtaagtgtagtgtagttgc |
40187117 |
T |
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| Q |
418 |
ttcggagggtttaacgttt-acgacagtttttgttttgtgggactagggcgtggattaagcatttcggtttactagataactcggttgaatttttctaat |
516 |
Q |
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| T |
40187118 |
ttcggagggtttaacgtttaacgacagtttttgttttgtgggactagggcgtggattaagcatttcagtttactagataacccggttgaatttttctaat |
40187217 |
T |
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| Q |
517 |
ttgtgtggggtccaattattaaataccttaaatcaaaacatgtttggataaaatggttttgttt |
580 |
Q |
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| T |
40187218 |
ttgtgtgcggtccaattattaaatacctaaaatcaaaacatatttggataaaatgggtttgttt |
40187281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 43426487 - 43426444
Alignment:
| Q |
116 |
ttatgatccaatcgcttcaaaaacgtaaacaacagtttcatgggt |
160 |
Q |
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| T |
43426487 |
ttattatccaatcgcttcaaaa-cataaacaacagtttcatgggt |
43426444 |
T |
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