View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9023_low_13 (Length: 440)
Name: NF9023_low_13
Description: NF9023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9023_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Complemental strand, 31969658 - 31969245
Alignment:
| Q |
18 |
attatattggaaaaaattctggtaaacttatatgttt-gataaacaacttaattaagtggttatttataaactatttacaaaataaatgataaaataaaa |
116 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31969658 |
attatattgggaaaaattctggtaaacttatatgttttgataaacaacttaattaagtggttatttataaactatttacaaaataaatgataaaataaaa |
31969559 |
T |
|
| Q |
117 |
tcaaactattttcataagccgtctatgagagcaaatatatttgtcaaggataacattttttaaacatttcaatttaaaaagaggcaataaatagaaattg |
216 |
Q |
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|||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31969558 |
tcaaactattttcatacgccgtctttgagagcaaatatattcgtcaaggataacattttttaaacatttcaatttaaaaagaggcaataaatagaaattg |
31969459 |
T |
|
| Q |
217 |
tctttgagagcttataaaataagcgaaaaacggcttagggacataagctctctcaaataaattcgtcaaggggaaacatttcaatttataaataactaat |
316 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31969458 |
tctttgagagcttataaaataagcgaaaaacggcttaggaacataagctctctcaaataaattcgtcaaggggaaacatttcaatttataaataactaat |
31969359 |
T |
|
| Q |
317 |
ttgtagaaatttataaatcgttaagaaataatc--aattcataaaactctataaactagcatattcaataaagaccccc--ttacattgacgttttaccc |
412 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| |
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| T |
31969358 |
ttgtagaaatttataaatcgttaagaaataatcaaaattcataaaactctataaactagcatattcaataaagacccccctgtacatggac-ttttaccc |
31969260 |
T |
|
| Q |
413 |
tatacccctacatct |
427 |
Q |
| |
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||||||||||||||| |
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| T |
31969259 |
tatacccctacatct |
31969245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 31968195 - 31968090
Alignment:
| Q |
30 |
aaaattctggtaaacttatatgttt-gataaacaacttaattaagtggttatttataaactatttacaaaataaatgataaaataaaatcaaactatttt |
128 |
Q |
| |
|
|||||||| ||||||| |||||||| |||||||||||||||||||||||| | ||||||||||| | |||| | |||||||||| |||||||||||| |
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| T |
31968195 |
aaaattcttgtaaact-atatgttttgataaacaacttaattaagtggttttgtataaactattcctacaatagaaaataaaataaagtcaaactatttt |
31968097 |
T |
|
| Q |
129 |
cataagc |
135 |
Q |
| |
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||||||| |
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|
| T |
31968096 |
cataagc |
31968090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 31964752 - 31964668
Alignment:
| Q |
52 |
tttgataaacaacttaattaagtggttatttataaactatttacaaaataaatgataaaataaaatc-aaactattttcataagc |
135 |
Q |
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|||||||||| |||||||||||||||| | ||||||||||| | |||||| ||||||||||| || ||||| ||||||||||| |
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| T |
31964752 |
tttgataaacgacttaattaagtggttttgtataaactattcctacaataaaagataaaataaagtcaaaactgttttcataagc |
31964668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 31420890 - 31420948
Alignment:
| Q |
70 |
taagtggttatttataaactatttacaaaataaatgataaaataaaatcaaactatttt |
128 |
Q |
| |
|
|||||| |||||||||| |||||| | |||||||| |||||||||||||||||||||| |
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|
| T |
31420890 |
taagtgtttatttataagctatttctataataaatggtaaaataaaatcaaactatttt |
31420948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 12225052 - 12224975
Alignment:
| Q |
55 |
gataaacaacttaattaagtggttatttataaactatttacaaaataaatgataaaataaaatcaaactattttcata |
132 |
Q |
| |
|
||||||||||||||||||| | |||| ||||| ||||| || | ||| ||||||||||| |||||||||||||||| |
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| T |
12225052 |
gataaacaacttaattaagagcttatgtataagttatttctaagacaaaagataaaataaagtcaaactattttcata |
12224975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 20192759 - 20192682
Alignment:
| Q |
55 |
gataaacaacttaattaagtggttatttataaactatttacaaaataaatgataaaataaaatcaaactattttcata |
132 |
Q |
| |
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|||||||| || ||||||||| |||| ||||| ||||||| | || ||| ||||||||||| |||||| |||||||| |
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| T |
20192759 |
gataaacagctcaattaagtgcttatgtataagctatttatataacaaaagataaaataaagtcaaacagttttcata |
20192682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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