View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9023_low_16 (Length: 422)
Name: NF9023_low_16
Description: NF9023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9023_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 1878125 - 1877710
Alignment:
| Q |
1 |
tcccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgcttgcaatcaccacaattggtagaaaatccatgtaaaagga |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1878125 |
tcccttgaagtgtggctgctttgtataaaatgactaaagccacgtcactgaattcattgcttgcaatcaccacaattggtagaaaatccatgtaaaagga |
1878026 |
T |
|
| Q |
101 |
ccatcttcttgtcatctttctatgtgttttaagttctataccttacacaacaatggcaaaccttgttgaaattcagaatatatggtatatgttcttaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1878025 |
ccatcttcttgtcatctttctatgtgttttaagttctataccttacacaacaatggcaaaccttgttgaaattcagaatatatggtatatgttcttaatg |
1877926 |
T |
|
| Q |
201 |
atgatga------gtttttgagttgaccatctttttaatcaaaaaccaaaatgaaagttaaaagctggttgtcttaaattaagatacactcaaaagactt |
294 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1877925 |
atgatgatgatgagtttttgagttgaccatctttttaatcaaaaaccaaaatgaaagttaaaagctggttgtcttaaattaagatacactcagaagactt |
1877826 |
T |
|
| Q |
295 |
tcttattatattattttgagtcatgtgattagtttaatactataattttgatgagatggtgttgacaaaatatcttaaaagttttgtaaattaatagtat |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1877825 |
tcttattatattattttgagtcatgtgattagtttaatactataattttgataagatggtgttgacaaaatatcttaaaagttttgtaaattaatagtat |
1877726 |
T |
|
| Q |
395 |
tattttgttaccattt |
410 |
Q |
| |
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|||||||||||||||| |
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| T |
1877725 |
tattttgttaccattt |
1877710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 1884137 - 1883959
Alignment:
| Q |
1 |
tcccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgcttgcaatcaccacaattggtagaaaatccatgtaaaagga |
100 |
Q |
| |
|
||||||||||||| ||||||||| | ||| | | |||||||| ||| ||||||||| | |||||| ||| ||| |||||||||||||||||||| |
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| T |
1884137 |
tcccttgaagtgtagctgctttgaacaaagtcagtaaagccatgtcaacacattcattgcctataatcacaacaggtggcagaaaatccatgtaaaagga |
1884038 |
T |
|
| Q |
101 |
ccatcttcttgtcatctttctatgtgttttaagttctataccttacacaacaatggcaaaccttgttgaaattcagaat |
179 |
Q |
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|| | ||||||||||||||||||||||| |||||| ||| | || |||||||| |||||||||||||| |||||||| |
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| T |
1884037 |
ccgttttcttgtcatctttctatgtgttctaagttttatcctatatacaacaatcacaaaccttgttgaagttcagaat |
1883959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 1895546 - 1895509
Alignment:
| Q |
86 |
atccatgtaaaaggaccatcttcttgtcatctttctat |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |
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| T |
1895546 |
atccatgtaaaaggaccatcttcttgtcatgtttctat |
1895509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 1911087 - 1910967
Alignment:
| Q |
1 |
tcccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgcttgcaatcaccacaattggtagaaaatccatgtaaaagga |
100 |
Q |
| |
|
||||||||||||| ||||||||| | ||| ||| |||||||| ||| | |||||| || | |||||| || ||| |||| ||||||||| ||||| |
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| T |
1911087 |
tcccttgaagtgtagctgctttgaacaaagtgagtaaagccatgtcaatacattcatagcatataatcacagcaggtggcagaacatccatgtacaagga |
1910988 |
T |
|
| Q |
101 |
ccatcttcttgtcatctttct |
121 |
Q |
| |
|
||||||||||||||| ||||| |
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| T |
1910987 |
ccatcttcttgtcatgtttct |
1910967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 11549179 - 11549123
Alignment:
| Q |
65 |
aatcaccacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttct |
121 |
Q |
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|||||| |||| |||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
11549179 |
aatcactacaaccggtagaaaatccatgtaaaaagaccatcttcttttcatctttct |
11549123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 11537506 - 11537453
Alignment:
| Q |
65 |
aatcaccacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctt |
118 |
Q |
| |
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|||||| |||| |||||||||||| |||||||| || ||||||||| ||||||| |
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| T |
11537506 |
aatcactacaactggtagaaaatctatgtaaaaagatcatcttcttttcatctt |
11537453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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