View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9023_low_17 (Length: 397)
Name: NF9023_low_17
Description: NF9023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9023_low_17 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 45 - 397
Target Start/End: Original strand, 35226529 - 35226882
Alignment:
| Q |
45 |
aggcacaacataagaagctaaaaactcatagttatagatgggttgggagacttaagatacagaagctaatttggcagttcttaaatgggagatggaactg |
144 |
Q |
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| T |
35226529 |
aggcacaacataagaagctaaaaactcatagttatagatgggttgggagacttaagatacagaagctaatttggcggttcttaaatgggagatggaactg |
35226628 |
T |
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| Q |
145 |
tgttgataaggagagtagaaaaacaaaattggtacctaagtgccaaaactgaaacagcaaagatctgtc--aaatgcaagagatgttagtgactattctc |
242 |
Q |
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| T |
35226629 |
tgttgataaggagagtagaaaaacaaaattggtacctaagtgccaaaactgaaacagcaaagatctgtcaaaaatgcaagagatgttggtgactattctc |
35226728 |
T |
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| Q |
243 |
aacatgcttgtattgcagtcttacacttgaaaattgatgtgaaattccttcagttggaaggaaatcagttaaagccaattcaagagatattggcattgca |
342 |
Q |
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| T |
35226729 |
aacatgcttgtattgcagtcttacacttgaaaattgatgtgaaattcctt-agttggaaggaaatcagttaaagccaattcaagagatattggcattgca |
35226827 |
T |
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| Q |
343 |
acatctgaaagtcagaatgagaagaaatacaactgacgatgtgggcacacaatat |
397 |
Q |
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| T |
35226828 |
acatctgaaagtcagaatgagaagaaatacacctgacgatgtgggcacacaatat |
35226882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 166 - 323
Target Start/End: Original strand, 35475534 - 35475688
Alignment:
| Q |
166 |
aacaaaattggtacctaagtgccaaaactgaaacagcaaagatctgtcaaatgcaagagatgttagtgactattctcaacatgcttgtattgcagtctta |
265 |
Q |
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| T |
35475534 |
aacaaaattagtaaccaagagccaagactgaaacggtaaagatctgtcatattcaggagacg---gtgtttattctcaacatatttatattgcagtttta |
35475630 |
T |
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| Q |
266 |
cacttgaaaattgatgtgaaattccttcagttggaaggaaatcagttaaagccaattc |
323 |
Q |
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| T |
35475631 |
cacttgataattgatgtgaagatcccttggttgcaaggaaatcagataaagccaattc |
35475688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 118
Target Start/End: Original strand, 35220373 - 35220452
Alignment:
| Q |
39 |
aagcagaggcacaacataagaagctaaaaactcatagttatagatgggttgggagacttaagatacagaagctaatttgg |
118 |
Q |
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| T |
35220373 |
aagcataggcccaacataaaaagctaaaaactcagaattatagttgtgttgggagacttcagatccaaaagctaatttgg |
35220452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 8638686 - 8638750
Alignment:
| Q |
164 |
aaaacaaaattggtacctaagtgccaaaactgaaacagcaaagatctgtcaaatgcaagagatgt |
228 |
Q |
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| T |
8638686 |
aaaacaaaattggtacccaagagcaacaactaaaacaataaagagctgtcaaattcaagagatgt |
8638750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 35475417 - 35475465
Alignment:
| Q |
70 |
tcatagttatagatgggttgggagacttaagatacagaagctaatttgg |
118 |
Q |
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| T |
35475417 |
tcatagttatagttgggttggtagaattaagatgcagaggctaatttgg |
35475465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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