View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9023_low_21 (Length: 371)

Name: NF9023_low_21
Description: NF9023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9023_low_21
NF9023_low_21
[»] chr8 (2 HSPs)
chr8 (113-359)||(23440107-23440354)
chr8 (17-109)||(8460747-8460839)
[»] chr3 (18 HSPs)
chr3 (17-109)||(19400910-19401002)
chr3 (30-113)||(19465529-19465612)
chr3 (19-109)||(19382074-19382164)
chr3 (35-109)||(18017203-18017277)
chr3 (19-93)||(18166353-18166427)
chr3 (19-93)||(19354912-19354986)
chr3 (30-109)||(17943135-17943214)
chr3 (19-110)||(19352572-19352663)
chr3 (17-93)||(16678407-16678483)
chr3 (17-93)||(18117165-18117241)
chr3 (17-93)||(19462389-19462465)
chr3 (17-93)||(25464247-25464323)
chr3 (30-93)||(19394346-19394409)
chr3 (30-93)||(14895130-14895193)
chr3 (30-93)||(17726277-17726340)
chr3 (30-93)||(19027506-19027569)
chr3 (30-89)||(19415385-19415444)
chr3 (53-94)||(19425886-19425927)
[»] chr2 (1 HSPs)
chr2 (166-294)||(8589749-8589875)
[»] chr4 (1 HSPs)
chr4 (49-102)||(2709332-2709385)
[»] chr6 (1 HSPs)
chr6 (19-93)||(13665677-13665751)


Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 113 - 359
Target Start/End: Complemental strand, 23440354 - 23440107
Alignment:
Q  113 aattagaaatttattaagcagatgaggttttggaatt-aattcctctaaaagataactcttatagtagtagttatacatcaatttagttacaaaattatg 211  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23440354 aattagaaatttattaagcagatgaggttttggaatttaattcctctaaaaaataactcttatagtagtagttatacatcaatttagttacaaaattatg 23440255  T
Q  212 aaatttattgtacagaaaagttatgtgatttgattagtttgggcacaacataaattacgtcacgagtgattcgggatattcatcaacaaagttatttatt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23440254 aaatttattgtacagaaaagttatgtgatttgattagtttgggcacaacataaattacgtcacgagtgattcgggattttcatcaacaaagttatttatt 23440155  T
Q  312 tgtaaattgcaagaaaactcaaaagaactagggcctaaatctgatatg 359  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23440154 tgtaaattgcaagaaaactcaaaagaattagggcctaaatctgatatg 23440107  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 8460839 - 8460747
Alignment:
Q  17 agcttgatggatcaaaagtttgaatttgagatcctattgggattgttccgtcaaaattattgcaagataaattcaaaacctctaaaaagttta 109  Q
    |||| |||| || |||| |||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8460839 agctcgatgcattaaaactttgaagttgagttccaattgggatttttccgtcaaaattattgcaagataaattcaaaacctctaaaaagttta 8460747  T

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Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 19401002 - 19400910
Alignment:
Q  17 agcttgatggatcaaaagtttgaatttgagatcctattgggattgttccgtcaaaattattgcaagataaattcaaaacctctaaaaagttta 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19401002 agcttgatggatcaaaagtttgaatttgagatcctattgggattgttccgtcaaaattattgcaagataaattcaaaacctctaaaaagttta 19400910  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 19465612 - 19465529
Alignment:
Q  30 aaaagtttgaatttgagatcctattgggattgttccgtcaaaattattgcaagataaattcaaaacctctaaaaagtttagaga 113  Q
    |||| |||||| ||||| ||||||||| ||| |||| |||||||||||||||||||||||||| ||||| ||||||||||||||    
T  19465612 aaaactttgaagttgagttcctattggaatttttccatcaaaattattgcaagataaattcaacacctccaaaaagtttagaga 19465529  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 19382164 - 19382074
Alignment:
Q  19 cttgatggatcaaaagtttgaatttgagatcctattgggattgttccgtcaaaattattgcaagataaattcaaaacctctaaaaagttta 109  Q
    ||||||| || |||| |||||| ||||| |||| |||||||| |||| |||||||||||||||||||||||||| ||||| ||||||||||    
T  19382164 cttgatgcattaaaactttgaagttgagttcctgttgggatttttccatcaaaattattgcaagataaattcaacacctccaaaaagttta 19382074  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 18017277 - 18017203
Alignment:
Q  35 tttgaatttgagatcctattgggattgttccgtcaaaattattgcaagataaattcaaaacctctaaaaagttta 109  Q
    |||||| ||||| |||| |||||||| |||| |||||||||||||||||||||||||| ||| | ||||||||||    
T  18017277 tttgaagttgagttcctgttgggatttttccatcaaaattattgcaagataaattcaacacccccaaaaagttta 18017203  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 18166427 - 18166353
Alignment:
Q  19 cttgatggatcaaaagtttgaatttgagatcctattgggattgttccgtcaaaattattgcaagataaattcaaa 93  Q
    ||||||| || |||| |||||| ||||| ||||||||||||| |||||||||| |||||| ||||||||||||||    
T  18166427 cttgatgcattaaaactttgaagttgagttcctattgggattattccgtcaaagttattgtaagataaattcaaa 18166353  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 19354986 - 19354912
Alignment:
Q  19 cttgatggatcaaaagtttgaatttgagatcctattgggattgttccgtcaaaattattgcaagataaattcaaa 93  Q
    ||||||| || |||| |||||| ||||| ||||||||||||| ||||||||||||| ||| ||||||||||||||    
T  19354986 cttgatgcattaaaactttgaagttgagttcctattgggatttttccgtcaaaattgttgtaagataaattcaaa 19354912  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 17943214 - 17943135
Alignment:
Q  30 aaaagtttgaatttgagatcctattgggattgttccgtcaaaattattgcaagataaattcaaaacctctaaaaagttta 109  Q
    |||| |||||| ||||| ||| ||||||||| |||| |||||||||||||||||||||||||| ||| | ||||| ||||    
T  17943214 aaaactttgaagttgagttccaattgggatttttccatcaaaattattgcaagataaattcaacacccccaaaaaattta 17943135  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 19352663 - 19352572
Alignment:
Q  19 cttgatggatcaaaagtttgaatttgagatcctattgggattgttccgtcaaaattattgcaagataaattcaaaacctctaaaaagtttag 110  Q
    ||||||| || |||| |||||| ||| | |||  |||||||| |||| |  |||||||||||||||||||| ||||||||||||||||||||    
T  19352663 cttgatgcattaaaactttgaagttgtgttccagttgggatttttccattgaaattattgcaagataaatttaaaacctctaaaaagtttag 19352572  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 16678483 - 16678407
Alignment:
Q  17 agcttgatggatcaaaagtttgaatttgagatcctattgggattgttccgtcaaaattattgcaagataaattcaaa 93  Q
    |||| |||| || |||| |||||| ||||| |||||| |||||| ||||||||||||| |||||||| |||||||||    
T  16678483 agctcgatgcattaaaactttgaagttgagttcctatcgggatttttccgtcaaaattgttgcaagacaaattcaaa 16678407  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 18117241 - 18117165
Alignment:
Q  17 agcttgatggatcaaaagtttgaatttgagatcctattgggattgttccgtcaaaattattgcaagataaattcaaa 93  Q
    ||||||||| || |||| |||||| ||| | | ||||||||||| ||||||||||||||||| | ||||||||||||    
T  18117241 agcttgatgcattaaaactttgaagttgcgttgctattgggatttttccgtcaaaattattgtatgataaattcaaa 18117165  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 19462465 - 19462389
Alignment:
Q  17 agcttgatggatcaaaagtttgaatttgagatcctattgggattgttccgtcaaaattattgcaagataaattcaaa 93  Q
    ||||||||| || |||| |||||| ||| | | ||||||||||| ||||||||||||||||| | ||||||||||||    
T  19462465 agcttgatgcattaaaactttgaagttgcgttgctattgggatttttccgtcaaaattattgtatgataaattcaaa 19462389  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 25464323 - 25464247
Alignment:
Q  17 agcttgatggatcaaaagtttgaatttgagatcctattgggattgttccgtcaaaattattgcaagataaattcaaa 93  Q
    |||| |||| || |||| |||||| ||||| ||||||||||||| |||| |||||||| ||| ||||||||||||||    
T  25464323 agctcgatgcattaaaactttgaagttgagttcctattgggatttttccatcaaaattgttgtaagataaattcaaa 25464247  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 19394409 - 19394346
Alignment:
Q  30 aaaagtttgaatttgagatcctattgggattgttccgtcaaaattattgcaagataaattcaaa 93  Q
    |||| |||||| ||||| ||||||||||||| ||||||||||||| ||| |||||| |||||||    
T  19394409 aaaactttgaagttgagttcctattgggatttttccgtcaaaattgttgtaagatagattcaaa 19394346  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 14895130 - 14895193
Alignment:
Q  30 aaaagtttgaatttgagatcctattgggattgttccgtcaaaattattgcaagataaattcaaa 93  Q
    |||| |||||| ||||| |||| |||| ||| ||||||||||||| ||| ||||||||||||||    
T  14895130 aaaactttgaagttgagttcctgttggaatttttccgtcaaaattgttgtaagataaattcaaa 14895193  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 17726277 - 17726340
Alignment:
Q  30 aaaagtttgaatttgagatcctattgggattgttccgtcaaaattattgcaagataaattcaaa 93  Q
    |||| |||||| ||||| ||||||||||||| |||| ||||| || ||| ||||||||||||||    
T  17726277 aaaactttgaagttgagttcctattgggatttttccatcaaacttgttgtaagataaattcaaa 17726340  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 19027506 - 19027569
Alignment:
Q  30 aaaagtttgaatttgagatcctattgggattgttccgtcaaaattattgcaagataaattcaaa 93  Q
    |||| |||||| ||||| ||||||||||||| |||| ||||| || ||| ||||||||||||||    
T  19027506 aaaactttgaagttgagttcctattgggatttttccatcaaacttgttgtaagataaattcaaa 19027569  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 19415444 - 19415385
Alignment:
Q  30 aaaagtttgaatttgagatcctattgggattgttccgtcaaaattattgcaagataaatt 89  Q
    |||| |||||| ||||| ||||||||||||| ||||||||||| | ||| ||||||||||    
T  19415444 aaaactttgaagttgagttcctattgggatttttccgtcaaaactgttgtaagataaatt 19415385  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 19425927 - 19425886
Alignment:
Q  53 ttgggattgttccgtcaaaattattgcaagataaattcaaaa 94  Q
    |||||||| ||||||  |||||||||||||||||||||||||    
T  19425927 ttgggatttttccgtttaaattattgcaagataaattcaaaa 19425886  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 166 - 294
Target Start/End: Original strand, 8589749 - 8589875
Alignment:
Q  166 aactcttatagtagtagttatacatcaatttagttacaaaattatgaaatttattgtacagaaaagttatgtgatttgattagtttgggcacaacataaa 265  Q
    ||||||| ||||||||||||||||| |||||||||| ||||   ||||||||||  |||  |||||||||||||||||||  ||||||  ||||||||||    
T  8589749 aactcttctagtagtagttatacattaatttagttagaaaa--ctgaaatttatactacgaaaaagttatgtgatttgatctgtttggatacaacataaa 8589846  T
Q  266 ttacgtcacgagtgattcgggatattcat 294  Q
    ||| |  || | | |||||||||||||||    
T  8589847 ttatgataccaatcattcgggatattcat 8589875  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 2709332 - 2709385
Alignment:
Q  49 cctattgggattgttccgtcaaaattattgcaagataaattcaaaacctctaaa 102  Q
    |||||||||||| |||| | ||||||||||||||||||||| ||||||||||||    
T  2709332 cctattgggatttttccattaaaattattgcaagataaatttaaaacctctaaa 2709385  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 13665677 - 13665751
Alignment:
Q  19 cttgatggatcaaaagtttgaatttgagatcctattgggattgttccgtcaaaattattgcaagataaattcaaa 93  Q
    ||||||| || |||| |||||| ||||| |||||| |||||| ||||||||||||| |||  |||||||||||||    
T  13665677 cttgatgcattaaaactttgaagttgagttcctatagggatttttccgtcaaaattgttgtgagataaattcaaa 13665751  T

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