View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9023_low_30 (Length: 259)

Name: NF9023_low_30
Description: NF9023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9023_low_30
NF9023_low_30
[»] chr2 (14 HSPs)
chr2 (16-136)||(18290826-18290944)
chr2 (151-242)||(18290625-18290710)
chr2 (140-178)||(20120713-20120751)
chr2 (140-178)||(22523004-22523042)
chr2 (140-178)||(31477002-31477040)
chr2 (140-180)||(35065620-35065660)
chr2 (140-178)||(10735823-10735861)
chr2 (140-178)||(20455922-20455960)
chr2 (140-178)||(27848189-27848227)
chr2 (140-178)||(29544658-29544696)
chr2 (141-178)||(28874545-28874582)
chr2 (141-178)||(42791326-42791363)
chr2 (146-178)||(5168577-5168609)
chr2 (142-178)||(44694719-44694755)
[»] chr6 (9 HSPs)
chr6 (82-136)||(14544935-14544989)
chr6 (140-178)||(8569740-8569778)
chr6 (140-178)||(12184539-12184577)
chr6 (140-178)||(21847225-21847263)
chr6 (140-178)||(26548282-26548320)
chr6 (140-178)||(26587423-26587461)
chr6 (141-178)||(26356074-26356111)
chr6 (142-178)||(12215784-12215820)
chr6 (150-178)||(21029368-21029396)
[»] chr5 (9 HSPs)
chr5 (82-136)||(26291059-26291113)
chr5 (140-178)||(25603992-25604030)
chr5 (140-178)||(27679529-27679567)
chr5 (140-178)||(3445239-3445277)
chr5 (140-178)||(22522793-22522831)
chr5 (140-178)||(32339766-32339804)
chr5 (140-178)||(40715941-40715979)
chr5 (141-173)||(1488401-1488433)
chr5 (146-178)||(38756761-38756793)
[»] chr7 (8 HSPs)
chr7 (82-136)||(6932385-6932439)
chr7 (140-178)||(45425484-45425522)
chr7 (142-178)||(36033458-36033494)
chr7 (140-178)||(2962718-2962756)
chr7 (140-178)||(27462428-27462466)
chr7 (140-178)||(34000293-34000331)
chr7 (141-178)||(5963820-5963857)
chr7 (146-178)||(29726831-29726863)
[»] chr4 (7 HSPs)
chr4 (82-136)||(508449-508503)
chr4 (143-178)||(50152233-50152268)
chr4 (140-178)||(11198359-11198397)
chr4 (140-178)||(23809980-23810018)
chr4 (140-178)||(28435240-28435278)
chr4 (140-178)||(49041973-49042011)
chr4 (141-178)||(47814244-47814281)
[»] chr3 (12 HSPs)
chr3 (140-178)||(45334220-45334258)
chr3 (147-178)||(47099034-47099065)
chr3 (140-178)||(10926500-10926538)
chr3 (140-178)||(25727959-25727997)
chr3 (140-178)||(29631217-29631255)
chr3 (140-178)||(38130951-38130989)
chr3 (140-178)||(48796210-48796248)
chr3 (140-178)||(48849755-48849793)
chr3 (140-178)||(52119407-52119445)
chr3 (141-178)||(20612270-20612307)
chr3 (141-178)||(48315017-48315054)
chr3 (140-173)||(53365940-53365973)
[»] scaffold0026 (1 HSPs)
scaffold0026 (140-178)||(75356-75394)
[»] chr8 (12 HSPs)
chr8 (140-178)||(3650551-3650589)
chr8 (140-178)||(6471542-6471580)
chr8 (140-178)||(8717467-8717505)
chr8 (148-178)||(12714370-12714400)
chr8 (140-178)||(12748932-12748970)
chr8 (140-178)||(16869557-16869595)
chr8 (140-178)||(26932857-26932895)
chr8 (140-178)||(27571841-27571879)
chr8 (140-178)||(32051524-32051562)
chr8 (140-178)||(32286356-32286394)
chr8 (140-178)||(37141388-37141426)
chr8 (141-178)||(4830039-4830076)
[»] chr1 (8 HSPs)
chr1 (140-178)||(17669676-17669714)
chr1 (140-178)||(27533274-27533312)
chr1 (148-178)||(44678017-44678047)
chr1 (140-178)||(47719099-47719137)
chr1 (140-178)||(51067886-51067924)
chr1 (140-177)||(19795108-19795145)
chr1 (141-178)||(32561004-32561041)
chr1 (140-173)||(44168418-44168451)
[»] scaffold0983 (1 HSPs)
scaffold0983 (141-178)||(3308-3345)


Alignment Details
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 18290944 - 18290826
Alignment:
Q  16 aaaagaatatattgggaattaaaaaggagtttatacatagctcaccaataggaagtcttttttctctctttcatttgaactaatttcaataattatttta 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||  |||||||||||||||||||||||||||||||    
T  18290944 aaaagaatatattgggaattaaaaaggagtttatacatagctcaccaataagaagtcttctttttct--ttcatttgaactaatttcaataattatttta 18290847  T
Q  116 gttgctttgatatgtgcaatt 136  Q
    |||||||||||||||||||||    
T  18290846 gttgctttgatatgtgcaatt 18290826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 151 - 242
Target Start/End: Complemental strand, 18290710 - 18290625
Alignment:
Q  151 tttgaaccccgaaccttgcatatattattgtccataccacgttaaactcatttcaattctatgtgaagtgaatgagttttaattgttgttca 242  Q
    |||||||||||||||||||||||||||||||||| |      | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18290710 tttgaaccccgaaccttgcatatattattgtccaga------ttaactcatttcaattctatgtgaagtgaatgagttttaattgttgttca 18290625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 20120713 - 20120751
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  20120713 ggtgtccgggatttgaaccccgaaccttgcatatattat 20120751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 22523004 - 22523042
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  22523004 ggtggccgggatttgaacctcgaaccttgcatatattat 22523042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 31477040 - 31477002
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  31477040 ggtggccgggatttgaaccccgaaccttgtatatattat 31477002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 35065620 - 35065660
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattattg 180  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  35065620 ggtggccggggtttgaacctcgaaccttgcatatattattg 35065660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 10735823 - 10735861
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  10735823 ggtggccggggtttgaaccccggaccttgcatatattat 10735861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 20455960 - 20455922
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  20455960 ggtggccgggattcgaaccccggaccttgcatatattat 20455922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 27848227 - 27848189
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  27848227 ggtggccggggtttgaaccccggaccttgcatatattat 27848189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 29544696 - 29544658
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  29544696 ggtggccggggtttgaaccccggaccttgcatatattat 29544658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 28874545 - 28874582
Alignment:
Q  141 gtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  28874545 gtggtcgggatttgaaccccgaaccttgcatattttat 28874582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 42791363 - 42791326
Alignment:
Q  141 gtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  42791363 gtggccggggtttgaaccccggaccttgcatatattat 42791326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 5168577 - 5168609
Alignment:
Q  146 cgggatttgaaccccgaaccttgcatatattat 178  Q
    |||| ||||||||||||||||||||||||||||    
T  5168577 cggggtttgaaccccgaaccttgcatatattat 5168609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 44694755 - 44694719
Alignment:
Q  142 tggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||||| |||||||||||| |||||||||||||||    
T  44694755 tggccggggtttgaaccccgagccttgcatatattat 44694719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 14544935 - 14544989
Alignment:
Q  82 tctttcatttgaactaatttcaataattattttagttgctttgatatgtgcaatt 136  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  14544935 tctttcatttgaactaatttcaataattcttttagttgctttgataggtgcaatt 14544989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 8569778 - 8569740
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  8569778 ggtggccggggtttgaaccccggaccttgcatatattat 8569740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 12184577 - 12184539
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  12184577 ggtggccgggatttgaaccacggaccttgcatatattat 12184539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 21847263 - 21847225
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  21847263 ggtggccgggattcgaaccccgtaccttgcatatattat 21847225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 26548320 - 26548282
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  26548320 ggtggctggggtttgaaccccgaaccttgcatatattat 26548282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 26587461 - 26587423
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    ||||||||||||| |||||| ||||||||||||||||||    
T  26587461 ggtggccgggattcgaacccagaaccttgcatatattat 26587423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 26356074 - 26356111
Alignment:
Q  141 gtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  26356074 gtggccggagtttgaaccccgaaccttgcatatattat 26356111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 12215820 - 12215784
Alignment:
Q  142 tggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  12215820 tggccgtgatttgaaccccggaccttgcatatattat 12215784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 178
Target Start/End: Original strand, 21029368 - 21029396
Alignment:
Q  150 atttgaaccccgaaccttgcatatattat 178  Q
    |||||||||||||||||||||||||||||    
T  21029368 atttgaaccccgaaccttgcatatattat 21029396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 26291059 - 26291113
Alignment:
Q  82 tctttcatttgaactaatttcaataattattttagttgctttgatatgtgcaatt 136  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  26291059 tctttcatttgaactaatttcaataattcttttagttgctttgataggtgcaatt 26291113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 25603992 - 25604030
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  25603992 ggtggccgggattcgaaccccgaaccttgcatatattat 25604030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 27679567 - 27679529
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  27679567 ggtgtccgggatttgaaccccgaaccttgcatatattat 27679529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 3445239 - 3445277
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  3445239 ggtggccgggatttgaaccccggaccttgcatacattat 3445277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 22522793 - 22522831
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  22522793 ggtggccggggtttgaaccccggaccttgcatatattat 22522831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 32339804 - 32339766
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  32339804 ggtggccgggattcgaaccccggaccttgcatatattat 32339766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 40715941 - 40715979
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  40715941 ggtggccggggtttgaaccccggaccttgcatatattat 40715979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 1488433 - 1488401
Alignment:
Q  141 gtggccgggatttgaaccccgaaccttgcatat 173  Q
    ||||||||||||||||||||||| |||||||||    
T  1488433 gtggccgggatttgaaccccgaatcttgcatat 1488401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 38756793 - 38756761
Alignment:
Q  146 cgggatttgaaccccgaaccttgcatatattat 178  Q
    ||||||||||||||||||||||| |||||||||    
T  38756793 cgggatttgaaccccgaaccttgtatatattat 38756761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 6932385 - 6932439
Alignment:
Q  82 tctttcatttgaactaatttcaataattattttagttgctttgatatgtgcaatt 136  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  6932385 tcttccatttgaactaatttcaataattcttttagttgctttgataggtgcaatt 6932439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 45425522 - 45425484
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  45425522 ggtggccgggattcgaaccccgaaccttgcatatattat 45425484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 36033458 - 36033494
Alignment:
Q  142 tggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||| ||||||||||||||||||||||||||||||    
T  36033458 tggccgagatttgaaccccgaaccttgcatatattat 36033494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 2962718 - 2962756
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  2962718 ggtggccgggattcaaaccccgaaccttgcatatattat 2962756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 27462428 - 27462466
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  27462428 ggtggccggggtttgaaccccggaccttgcatatattat 27462466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 34000331 - 34000293
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  34000331 ggtggccggtatttgaaccccgaaccttacatatattat 34000293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 5963820 - 5963857
Alignment:
Q  141 gtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  5963820 gtggctgggatttgaaccccgaaccttgcatattttat 5963857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 29726863 - 29726831
Alignment:
Q  146 cgggatttgaaccccgaaccttgcatatattat 178  Q
    |||| ||||||||||||||||||||||||||||    
T  29726863 cggggtttgaaccccgaaccttgcatatattat 29726831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 508449 - 508503
Alignment:
Q  82 tctttcatttgaactaatttcaataattattttagttgctttgatatgtgcaatt 136  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  508449 tcttccatttgaactaatttcaataattcttttagttgctttgataggtgcaatt 508503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 178
Target Start/End: Original strand, 50152233 - 50152268
Alignment:
Q  143 ggccgggatttgaaccccgaaccttgcatatattat 178  Q
    ||||||| ||||||||||||||||||||||||||||    
T  50152233 ggccggggtttgaaccccgaaccttgcatatattat 50152268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 11198397 - 11198359
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  11198397 ggtggccggggtttgaaccccggaccttgcatatattat 11198359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 23810018 - 23809980
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  23810018 ggtggccggggtttgaaccctgaaccttgcatatattat 23809980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 28435240 - 28435278
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  28435240 ggtggctggggtttgaaccccgaaccttgcatatattat 28435278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 49041973 - 49042011
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  49041973 ggtggccggggtttgaaccccggaccttgcatatattat 49042011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 47814244 - 47814281
Alignment:
Q  141 gtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  47814244 gtggccggggtttgaaccccggaccttgcatatattat 47814281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 45334258 - 45334220
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  45334258 ggtggtcgggatttgaaccccgaaccttgcatatattat 45334220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 178
Target Start/End: Original strand, 47099034 - 47099065
Alignment:
Q  147 gggatttgaaccccgaaccttgcatatattat 178  Q
    ||||||||||||||||||||||||||||||||    
T  47099034 gggatttgaaccccgaaccttgcatatattat 47099065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 10926538 - 10926500
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  10926538 ggtggccgacatttgaaccccgaaccttgcatatattat 10926500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 25727959 - 25727997
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    ||||| |||||||||||||||| ||||||||||||||||    
T  25727959 ggtggtcgggatttgaaccccggaccttgcatatattat 25727997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 29631255 - 29631217
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  29631255 ggtggccggggtttgaatcccgaaccttgcatatattat 29631217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 38130951 - 38130989
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  38130951 ggtggccggggtttgaaccccggaccttgcatatattat 38130989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 48796210 - 48796248
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  48796210 ggtggccggggtttgaaccccgaaccttgcatatcttat 48796248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 48849755 - 48849793
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  48849755 ggtggccggggtttgaaccccggaccttgcatatattat 48849793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 52119445 - 52119407
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||||||| || |||||||||||||||||||||||||    
T  52119445 ggtggccggggttcgaaccccgaaccttgcatatattat 52119407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 20612270 - 20612307
Alignment:
Q  141 gtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  20612270 gtggccggggtttgaaccccaaaccttgcatatattat 20612307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 48315017 - 48315054
Alignment:
Q  141 gtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  48315017 gtggtcgggatttgaaccccggaccttgcatatattat 48315054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 53365973 - 53365940
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatat 173  Q
    |||||||||||||||||||||| |||||||||||    
T  53365973 ggtggccgggatttgaaccccggaccttgcatat 53365940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 75394 - 75356
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  75394 ggtggccgggattcgaaccccggaccttgcatatattat 75356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 3650589 - 3650551
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||||||| ||||||||||||||||| ||||||||||    
T  3650589 ggtggccggggtttgaaccccgaaccttacatatattat 3650551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 6471580 - 6471542
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  6471580 ggtggccggggtttgaaccccgaacattgcatatattat 6471542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 8717467 - 8717505
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  8717467 ggtggccgaggtttgaaccccgaaccttgcatatattat 8717505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 12714370 - 12714400
Alignment:
Q  148 ggatttgaaccccgaaccttgcatatattat 178  Q
    |||||||||||||||||||||||||||||||    
T  12714370 ggatttgaaccccgaaccttgcatatattat 12714400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 12748970 - 12748932
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  12748970 ggtggccggggtttgaaccccggaccttgcatatattat 12748932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 16869595 - 16869557
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    ||||||||||||||||||||||||| ||||| |||||||    
T  16869595 ggtggccgggatttgaaccccgaactttgcaaatattat 16869557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 26932857 - 26932895
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  26932857 ggtggccggggtttgaaccccgaaccttgcatattttat 26932895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 27571841 - 27571879
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  27571841 ggtggtcgggatttgaaccccaaaccttgcatatattat 27571879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 32051524 - 32051562
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  32051524 ggtggccggggtttgaaccccggaccttgcatatattat 32051562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 32286356 - 32286394
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  32286356 ggtggccggggtttgaaccccgaatcttgcatatattat 32286394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 37141426 - 37141388
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  37141426 ggtggccggagtttgaaccccgaaccttgcatatattat 37141388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 4830076 - 4830039
Alignment:
Q  141 gtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  4830076 gtggtcgggattcgaaccccgaaccttgcatatattat 4830039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 17669714 - 17669676
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  17669714 ggtggccggagtttgaaccccgaaccttgcatatattat 17669676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 27533312 - 27533274
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  27533312 ggtggtcggggtttgaaccccgaaccttgcatatattat 27533274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 44678017 - 44678047
Alignment:
Q  148 ggatttgaaccccgaaccttgcatatattat 178  Q
    |||||||||||||||||||||||||||||||    
T  44678017 ggatttgaaccccgaaccttgcatatattat 44678047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 47719099 - 47719137
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  47719099 ggtggccgggattcgaactccgaaccttgcatatattat 47719137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 51067886 - 51067924
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  51067886 ggtggtcgggatttgaaccccgagccttgcatatattat 51067924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 19795108 - 19795145
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatatatta 177  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  19795108 ggtggccggggtttgaaccccggaccttgcatatatta 19795145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 32561041 - 32561004
Alignment:
Q  141 gtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  32561041 gtggtcgggatttgaaccccggaccttgcatatattat 32561004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 44168418 - 44168451
Alignment:
Q  140 ggtggccgggatttgaaccccgaaccttgcatat 173  Q
    |||||||||||||| |||||||||||||||||||    
T  44168418 ggtggccgggatttaaaccccgaaccttgcatat 44168451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0983 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0983
Description:

Target: scaffold0983; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 3308 - 3345
Alignment:
Q  141 gtggccgggatttgaaccccgaaccttgcatatattat 178  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  3308 gtggccgaggtttgaaccccgaaccttgcatatattat 3345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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