View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9023_low_32 (Length: 258)
Name: NF9023_low_32
Description: NF9023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9023_low_32 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 30 - 258
Target Start/End: Original strand, 50840330 - 50840557
Alignment:
| Q |
30 |
atcaacaggcttccttacacgaccatatgtgttacttactgccattactgcctgtgaaggaggaattggcctgaaaagacattgaaatataatattaatg |
129 |
Q |
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| T |
50840330 |
atcaacaggcttccttacacgaccatatgtgttacttactgccattactgcctgtgaaggaggaattggcctgaaaagacattgaaatataatattaatg |
50840429 |
T |
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| Q |
130 |
tagtcagaattcagatcagaaccagaacgaagtttcataaaatnnnnnnntagcaaaacaagaacgtcataatacatttagtatagaatgtagatggaaa |
229 |
Q |
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| T |
50840430 |
tagtcagaattcagatcagaaccagaacgaagtttcataaaa-aaaaaaatagcaaaacaagaacgtcatattacatttagtatagaatgtagatggaaa |
50840528 |
T |
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| Q |
230 |
aacaatattcactgttttcttgtattcaa |
258 |
Q |
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| T |
50840529 |
aacaatattcactgttttcttgtattcaa |
50840557 |
T |
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