View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9023_low_34 (Length: 257)
Name: NF9023_low_34
Description: NF9023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9023_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 13793321 - 13793083
Alignment:
| Q |
1 |
cagtgacattacaatggaaaatgttaagaatcctatcatcattgaccaagagtatgaatgctctccaaattgcaaaaagaaggtttgtgtgttcatattt |
100 |
Q |
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| T |
13793321 |
cagtgacattacaatggaaaatgttaagaatcctatcatcattgaccaagagtatgaatgctctccaaattgcaaaaagaaggtttgtgtgttcatattt |
13793222 |
T |
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| Q |
101 |
ctctttatttttaattcattattacaatatgtgctaaaacatttaattcgatcaaccacctccatagaatttgctagttgtcattgaataaaacattgtt |
200 |
Q |
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| T |
13793221 |
ctctttatttttaattcattattacaatatgtgctaaaacatttaattcgatcaaccacctccatagaatttgctagttgtcattgaataaaacattgtt |
13793122 |
T |
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| Q |
201 |
ccgttcctatcaaataaacgaaaccgttgttaactgcat |
239 |
Q |
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| T |
13793121 |
ccgctcctattaaataaacgaaaccgttgttaactgcat |
13793083 |
T |
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