View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9023_low_37 (Length: 241)
Name: NF9023_low_37
Description: NF9023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9023_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 38025300 - 38025075
Alignment:
| Q |
1 |
aataaactttcctcattgaataatattgccgtttgatattacaaactttacatagtttatctaatctaacatcactatataatataataattatatttac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38025300 |
aataaactttcctcattgaataatattgccgtttgatattacaaactttacatagtttatctaatctaacatcactatgtaatataataattatatttac |
38025201 |
T |
|
| Q |
101 |
aaattaatcaattaggaccccagcagctcaagtacatgacagtcctcaaagactcctctgcctgtttggccttcttgtcatccttaaatttggtagcaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||| |||||| |||||||||||||||||||||| |
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| T |
38025200 |
aaattaatcaattaggaccccagcagctcaagtacatgacagtccttagagactcctctgcttgtttggacttcttctcatccttaaatttggtagcaag |
38025101 |
T |
|
| Q |
201 |
aaatgaagaagaagagaaattctttg |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
38025100 |
aaatgaagaagaagagaaattctttg |
38025075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 38032022 - 38031815
Alignment:
| Q |
1 |
aataaactttcctcattgaataatattgccgtttgatattacaaactttacatagtttatctaatctaacatcactatataatataataattatatttac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||| |||||||| || || ||||||||||||||||| || |
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| T |
38032022 |
aataaactttcctcattgaataatattgccgtttaagattacaaaatttacataattaatataatctaacatcactatgtat------------------ |
38031941 |
T |
|
| Q |
101 |
aaattaatcaattaggaccccagcagctcaagtacatgacagtcctcaaagactcctctgcctgtttggccttcttgtcatccttaaatttggtagcaac |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||| |
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| T |
38031940 |
aagttaatcaattaggaccccagcagctcaagtacatgacagtcctcaaagactcctctgcctgtttggccttcttctcatccttaagtttgttagcaag |
38031841 |
T |
|
| Q |
201 |
aaatgaagaagaagagaaattctttg |
226 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
38031840 |
aaatgaagaagaagagaaattctttg |
38031815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 98 - 226
Target Start/End: Complemental strand, 38003692 - 38003564
Alignment:
| Q |
98 |
tacaaattaatcaattaggaccccagcagctcaagtacatgacagtcctcaaagactcctctgcctgtttggccttcttgtcatccttaaatttggtagc |
197 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||| |||| |
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| T |
38003692 |
tacaaattaatcaattgggaccccaacagctcaagtacatgacagtcctcaaagactcctctgcctgttttgccttcttctcatccttaagtttgttagc |
38003593 |
T |
|
| Q |
198 |
aacaaatgaagaagaagagaaattctttg |
226 |
Q |
| |
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|| |||||||||||||||||||||||||| |
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| T |
38003592 |
aagaaatgaagaagaagagaaattctttg |
38003564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 2912525 - 2912477
Alignment:
| Q |
107 |
atcaattaggaccccagcagctcaagtacatgacagtcctcaaagactc |
155 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||| | |||||| |
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| T |
2912525 |
atcaatttggaccccagcagctcaagtacatgacagtcctaagagactc |
2912477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 38003777 - 38003694
Alignment:
| Q |
1 |
aataaactttcctcattgaataatatt------gccgtttgatattacaaactttacatagtttatctaatctaacatcactat |
78 |
Q |
| |
|
||||||||||||||||||||||||| | | |||||||||||||||||||||||| | ||||||||||| |||||||| |
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| T |
38003777 |
aataaactttcctcattgaataataatagtactgtagtttgatattacaaactttacataaataatctaatctaatatcactat |
38003694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 38022110 - 38022056
Alignment:
| Q |
115 |
ggaccccagcagctcaagtacatgacagtcctcaaagactcctctgcctgtttgg |
169 |
Q |
| |
|
||||||||||| |||||| |||||||||| |||||||| ||||||| ||| |||| |
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|
| T |
38022110 |
ggaccccagcaactcaagaacatgacagttctcaaagattcctctgactgcttgg |
38022056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 38045148 - 38045095
Alignment:
| Q |
105 |
taatcaattaggaccccagcagctcaagtacatgacagtcctcaaagactcctc |
158 |
Q |
| |
|
|||| |||| ||||||||||| |||||||||||||| |||||||||| ||||| |
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|
| T |
38045148 |
taattaattgggaccccagcaactcaagtacatgaccttcctcaaagattcctc |
38045095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 38069158 - 38069110
Alignment:
| Q |
112 |
ttaggaccccagcagctcaagtacatgacagtcctcaaagactcctctg |
160 |
Q |
| |
|
||||||||||| ||||| ||||||||||| || |||||||| ||||||| |
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| T |
38069158 |
ttaggaccccaacagcttaagtacatgactgttctcaaagattcctctg |
38069110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 16005531 - 16005483
Alignment:
| Q |
110 |
aattaggaccccagcagctcaagtacatgacagtcctcaaagactcctc |
158 |
Q |
| |
|
|||| |||||||| ||||| ||||||||||| |||||||| |||||||| |
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| T |
16005531 |
aattgggaccccaacagcttaagtacatgaccgtcctcaatgactcctc |
16005483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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