View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9023_low_39 (Length: 235)
Name: NF9023_low_39
Description: NF9023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9023_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 9e-94; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 41686332 - 41686513
Alignment:
| Q |
19 |
gattcaccttgagcatccttcaactttctcagctcacgaacttctaactccaattcactgttcttctttcttagctctccaatgatgtctctatcaccca |
118 |
Q |
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| T |
41686332 |
gattcatctggagcatccttcaactttctcagctcacgaacttctaactccaattcactgttcttctttcttagctctccaatgatgtctctatcaccca |
41686431 |
T |
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| Q |
119 |
aactagttttttccttaacttccttcaacaatttttcataattattttgtgctcttatccctctttcacaaagttcctctct |
200 |
Q |
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| T |
41686432 |
aactagttttttccttaacttccttcaacaatttttcataattattttgtgctcttatccctctttcacaaagttcctctct |
41686513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 34 - 200
Target Start/End: Original strand, 41708728 - 41708891
Alignment:
| Q |
34 |
tccttcaactttctcagctcacgaacttctaactccaattcactgttcttctttcttagctctccaatgatgtctctatcacccaaactagttttttcct |
133 |
Q |
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| T |
41708728 |
tccttcaactttctcagttcacaaacttctaactccaattcattgttcttctttcttagctctccaatggtgtctttttcagctaagtttgtttt---ct |
41708824 |
T |
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| Q |
134 |
taacttccttcaacaatttttcataattattttgtgctcttatccctctttcacaaagttcctctct |
200 |
Q |
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| T |
41708825 |
taacttccttcaataacttttcataattattttgtgctcttttccctttttcacacagttcctctct |
41708891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 34 - 200
Target Start/End: Original strand, 41717800 - 41717963
Alignment:
| Q |
34 |
tccttcaactttctcagctcacgaacttctaactccaattcactgttcttctttcttagctctccaatgatgtctctatcacccaaactagttttttcct |
133 |
Q |
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| T |
41717800 |
tccttcaactttctcagttcacaaacttctaactccaattcattgttcttctttcttagctctccaatggtgtctttttcagctaagtttgtttt---ct |
41717896 |
T |
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| Q |
134 |
taacttccttcaacaatttttcataattattttgtgctcttatccctctttcacaaagttcctctct |
200 |
Q |
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| T |
41717897 |
taacttccttcaataacttttcataattattttgtgctcttttccctttttcacacagttcctctct |
41717963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 37 - 200
Target Start/End: Complemental strand, 41687982 - 41687819
Alignment:
| Q |
37 |
ttcaactttctcagctcacgaacttctaactccaattcactgttcttctttcttagctctccaatgatgtctctatcacccaaactagttttttccttaa |
136 |
Q |
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| T |
41687982 |
ttcaactttctcagctcacaaacttcgaactccaattcaatgtctttctttcttggctttccgatgttgtctctctcaatcaaactagttttttgtttga |
41687883 |
T |
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| Q |
137 |
cttccttcaacaatttttcataattattttgtgctcttatccctctttcacaaagttcctctct |
200 |
Q |
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| T |
41687882 |
cttccttcaacaatgcttcataattttgttgtgctcttttccctctttcacatagttcctctct |
41687819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 36 - 200
Target Start/End: Original strand, 41659357 - 41659518
Alignment:
| Q |
36 |
cttcaactttctcagctcacgaacttctaactccaattcactgttcttctttcttagctctccaatgatgtctctatcacccaaactagttttttcctta |
135 |
Q |
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|||||||||||||||||||| |||||| |||||||||||| | ||||||||||||||||||| ||||||||||| ||| | ||||||||||| |||| |
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| T |
41659357 |
cttcaactttctcagctcacaaacttccaactccaattcattattcttctttcttagctctctaatgatgtctccttcaactaaactagtttt---ctta |
41659453 |
T |
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| Q |
136 |
acttccttcaacaatttttcataattattttgtgctcttatccctctttcacaaagttcctctct |
200 |
Q |
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| T |
41659454 |
acttcctccaacaatgtttcataattactctgtgccctttttcctctttcgcatagttcctctct |
41659518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 14682512 - 14682447
Alignment:
| Q |
132 |
cttaacttccttcaacaatttttcataattattttgtgctcttatccctctttcacaaagttcctc |
197 |
Q |
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||||||||||||||||||||||||||||||||| |||||| || ||||||| ||||| | |||||| |
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| T |
14682512 |
cttaacttccttcaacaatttttcataattattctgtgcttttttccctctctcacacatttcctc |
14682447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 87
Target Start/End: Original strand, 41504162 - 41504192
Alignment:
| Q |
57 |
aacttctaactccaattcactgttcttcttt |
87 |
Q |
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| T |
41504162 |
aacttctaactccaattcactgttcttcttt |
41504192 |
T |
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