View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9023_low_41 (Length: 228)
Name: NF9023_low_41
Description: NF9023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9023_low_41 |
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| [»] scaffold0423 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 4438829 - 4438872
Alignment:
| Q |
167 |
ttgttcaaaataaataaatactaaattgaaattaatagtgtagg |
210 |
Q |
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| T |
4438829 |
ttgttcaaaataaataaatactaaattgaaattaatagtgtagg |
4438872 |
T |
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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 4438783 - 4438827
Alignment:
| Q |
79 |
tgactttatatcttgtggagtggttcttttgtagcacacattgtg |
123 |
Q |
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| T |
4438783 |
tgactttatatcttgtggagtggttcttttgtagcacaccttgtg |
4438827 |
T |
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Target: scaffold0423 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0423
Description:
Target: scaffold0423; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 10034 - 10002
Alignment:
| Q |
152 |
atattccattttgatttgttcaaaataaataaa |
184 |
Q |
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| T |
10034 |
atattccattttgatttgttcaaaaaaaataaa |
10002 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 29934753 - 29934785
Alignment:
| Q |
152 |
atattccattttgatttgttcaaaataaataaa |
184 |
Q |
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| T |
29934753 |
atattccattttgatttgttcaaaaaaaataaa |
29934785 |
T |
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