View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9023_low_48 (Length: 206)
Name: NF9023_low_48
Description: NF9023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9023_low_48 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 43095878 - 43095673
Alignment:
| Q |
1 |
tgtttgcttatcataaatcttatatgaataaattatatgtattgtaagtgtaatcataactcgccatttacataattgtttttagttaaaaaactgtaaa |
100 |
Q |
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| T |
43095878 |
tgtttgcttatcataaatcttaaaggaataaattatatgtattgtaagtgtaatcataactcgccatttacataattgtttttagttaaaaaaccgtaaa |
43095779 |
T |
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| Q |
101 |
gtacgatgtagcaaattgaagagttgtgattaagcgttagtgtaaaattataacttttctcatttgtattgaaattcagcattactaaaatactataaaa |
200 |
Q |
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| T |
43095778 |
gtacgatgtagcaaattgaagagttgtgattaaatgttagtgtaaaattataacttttctcatttgtattgaaattcagcattactaaaatactataaaa |
43095679 |
T |
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| Q |
201 |
agaggt |
206 |
Q |
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|||||| |
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| T |
43095678 |
agaggt |
43095673 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 13898017 - 13897976
Alignment:
| Q |
90 |
aaaactgtaaagtacgatgtagcaaattgaagagttgtgatt |
131 |
Q |
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| T |
13898017 |
aaaactgtaaaatatgatgtggcaaattgaagagttgtgatt |
13897976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 34003608 - 34003664
Alignment:
| Q |
70 |
acataattgtttttagttaaaaaactgtaaagtacgatgtagcaaattgaagagttg |
126 |
Q |
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| T |
34003608 |
acataattatttttaatttaaaaactgtcaaatatgatgtggcaaattgaagagttg |
34003664 |
T |
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