View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9023_low_7 (Length: 695)

Name: NF9023_low_7
Description: NF9023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9023_low_7
NF9023_low_7
[»] chr2 (1 HSPs)
chr2 (24-689)||(17471798-17472460)


Alignment Details
Target: chr2 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 24 - 689
Target Start/End: Complemental strand, 17472460 - 17471798
Alignment:
Q  24 tgtcagacacccatagtacatctctcatgcgtccacacacacactctctctcatctagtaggagtatataattaaggacccttgctcattcccttaatac 123  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17472460 tgtcagacacccatagtacatctctcacgtgtccacacacacactctctctcatctagtaggagtatataattaaagacccttgctcattcccttaatac 17472361  T
Q  124 atacatacactcactcttctttttacaacacatcatcatatatctcatagtagtataatgatgtacttgagaagtgaattctctgaatattcaaacgaaa 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17472360 atacatacactcactcttctttttacaacacatcatcatatatctcatagtagtataatgatgtacttgagaagtggattctctgaatattcaaacgaaa 17472261  T
Q  224 tcagcaacaacactagcagtgagttatgctgcacaacagcaccaaattcaaccattactccttcaaaagatatcatcacattcacacaaccactcaaccg 323  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  17472260 tcagcaacaatactagcagtgagttatgctgcacaacagcaccaaattcaaccattactgcttcacaagatgtcatcacattcacacaaccactcaaccg 17472161  T
Q  324 tctctcagacaatctagcttcaatactagatgatgatacagggtttgacttcttttccgacgcaaagatcatcgccaaagatggtcgagaagtttccgtg 423  Q
    ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17472160 tctctcagacaatctagcttcaatactagatgat---acagggtttgacttcttttccgacgcaaagatcatcgccaaagatggtcgagaagtttccgtg 17472064  T
Q  424 caccggtgcattctgtcagcaaggagtagtttctttaaggatgtttttaagggaaagaaagaaacgacgctgcaactgaaggaagttgctaaggattatg 523  Q
    |||||||||||| | || || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17472063 caccggtgcattttatcggcgaggagtagtttctttaaggatgtgtttaagggaaagaaagaaacgacgctgcaactgaaggaagttgctaaggattatg 17471964  T
Q  524 atgttgggtttgaagcgcttaacgttgttctgcgttatttgtatagtgagagagttgaggatcatcatttgtctgctaaagatgtttgtgtttgtgtgga 623  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17471963 atgttgggtttgacgcgcttaacgttgttctgcgttatttgtatagtgagagagttgaggatcatcatttgtctgctaaagatgtttgtgtttgtgtgga 17471864  T
Q  624 tgatgattgtttacactttggttgttggccagttgttgatttcatgcttcagcttctctctgcttc 689  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  17471863 tgatgattgtttacactttggttgttggccagttgttgatttcatgcttcaacttctctatgcttc 17471798  T

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