View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9023_low_8 (Length: 695)

Name: NF9023_low_8
Description: NF9023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9023_low_8
NF9023_low_8
[»] chr2 (1 HSPs)
chr2 (24-689)||(17471798-17472460)


Alignment Details
Target: chr2 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 24 - 689
Target Start/End: Complemental strand, 17472460 - 17471798
Alignment:
Q  24 tgtcagacacccatagtacatctctcatgcgtccacacacacactctctctcatctagtaggagtatataattaaggacccttgctcattcccttaatac 123  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17472460 tgtcagacacccatagtacatctctcacgtgtccacacacacactctctctcatctagtaggagtatataattaaagacccttgctcattcccttaatac 17472361  T
Q  124 atacatacactcactcttctttttacaacacatcatcatatatctcatagtagtataatgatgtacttgagaagtgaattctctgaatattcaaacgaaa 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17472360 atacatacactcactcttctttttacaacacatcatcatatatctcatagtagtataatgatgtacttgagaagtggattctctgaatattcaaacgaaa 17472261  T
Q  224 tcagcaacaacactagcagtgagttatgctgcacaacagcaccaaattcaaccattactccttcaaaagatatcatcacattcacacaaccactcaaccg 323  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  17472260 tcagcaacaatactagcagtgagttatgctgcacaacagcaccaaattcaaccattactgcttcacaagatgtcatcacattcacacaaccactcaaccg 17472161  T
Q  324 tctctcagacaatctagcttcaatactagatgatgatacagggtttgacttcttttccgacgcaaagatcatcgccaaagatggtcgagaagtttccgtg 423  Q
    ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17472160 tctctcagacaatctagcttcaatactagatgat---acagggtttgacttcttttccgacgcaaagatcatcgccaaagatggtcgagaagtttccgtg 17472064  T
Q  424 caccggtgcattctgtcagcaaggagtagtttctttaaggatgtttttaagggaaagaaagaaacgacgctgcaactgaaggaagttgctaaggattatg 523  Q
    |||||||||||| | || || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17472063 caccggtgcattttatcggcgaggagtagtttctttaaggatgtgtttaagggaaagaaagaaacgacgctgcaactgaaggaagttgctaaggattatg 17471964  T
Q  524 atgttgggtttgaagcgcttaacgttgttctgcgttatttgtatagtgagagagttgaggatcatcatttgtctgctaaagatgtttgtgtttgtgtgga 623  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17471963 atgttgggtttgacgcgcttaacgttgttctgcgttatttgtatagtgagagagttgaggatcatcatttgtctgctaaagatgtttgtgtttgtgtgga 17471864  T
Q  624 tgatgattgtttacactttggttgttggccagttgttgatttcatgcttcagcttctctctgcttc 689  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  17471863 tgatgattgtttacactttggttgttggccagttgttgatttcatgcttcaacttctctatgcttc 17471798  T

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