View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9023_low_9 (Length: 629)
Name: NF9023_low_9
Description: NF9023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9023_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 20 - 617
Target Start/End: Original strand, 33556344 - 33556953
Alignment:
| Q |
20 |
attgacgtcgcgggagcatgtttccccaatctgttatgaattgttgctcacatgaaacaaaaatatgtccttaaaatcttgatcatagattatttgatga |
119 |
Q |
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| T |
33556344 |
attgacgtcgcgggagcatgtttccccaatctgttatgaattgttgctcacatgaaacaaaaatatgtccttaaaatcttgatcatagattatttgatga |
33556443 |
T |
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| Q |
120 |
attgaagatgaagagaatatactaacactttgcaacttttgatattaagctttaagaatctcaaatttttagggttaggatgaagtgttaaaatttaatt |
219 |
Q |
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| T |
33556444 |
attgaagatgaagagaatatactaacactttgcaacttttgatattaagctttaagaatctcaaatttttagggttaggatgaagtgttaaaatttaatt |
33556543 |
T |
|
| Q |
220 |
gtgaaatgtctagagtcatgatgcctttgtttatcacataaatttcttagtataa-----tatgtat-------gtatggttcatatataaagcaattca |
307 |
Q |
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| T |
33556544 |
gtgaaatgtctagagtcatgatgcctttgtttatcacataaatttcttagtataaagtactatgtatttaatatgtatggttcatatataaagcaattca |
33556643 |
T |
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| Q |
308 |
gtaaagaataaatttcttaacataaggtagtatcactatgtatttatggttcaaatatgtaaaattcttcaactttttaaagagtttttatatactttct |
407 |
Q |
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| T |
33556644 |
gtaaagaataaatttcttaacataaggtagtatcactatgtatttatggttcaaatatgtaaaattcttcaactttttaaagagtttttatatactttct |
33556743 |
T |
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| Q |
408 |
aatgataataaagtacctgaacaagtacatagcaaccaaatacaagacttgcactaatcaaagttgcgattagaaggtaattctgcaagaaaataaggat |
507 |
Q |
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| T |
33556744 |
aatgataataaagtacctgaacaagtacatagcaaccaaatacaagacttgcactaatcaaagttgcgattagaaggtaattctgcaagaaaataaggat |
33556843 |
T |
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| Q |
508 |
gcaagagtgaaatttatacaatggtagagcatgcaaaatgcaaaatttaatcacacttacctccattagctattttaattaaattctatttaacaaatta |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33556844 |
gcaagagtgaaatttatacaatggtagagcatgcaaaatgtaaaatttaatcacacttacctccattagctattttaattaaattctattcaacaaatta |
33556943 |
T |
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| Q |
608 |
caacaccaaa |
617 |
Q |
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| T |
33556944 |
caacaccaaa |
33556953 |
T |
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