View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9024_high_2 (Length: 403)
Name: NF9024_high_2
Description: NF9024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9024_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 136 - 391
Target Start/End: Complemental strand, 31701663 - 31701408
Alignment:
| Q |
136 |
tgaataaagagaacagtgttcaagaacgtatttacaattcaaaataacatcgttaatcaactacagtaatatgtatcaacagccttaacagtagtgtgat |
235 |
Q |
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| T |
31701663 |
tgaatcaagagaacagtgttcaagaacgtatttacaattcaaaataacatcgttaatcaactacagtaatatgtatcaacagccttaacagtagtgtgat |
31701564 |
T |
|
| Q |
236 |
aatccagtacaagaaacaggtgcaacatggaagccacaaagatttattaccagataagaacttgttttcgtataccactaaccccccatcagaaaacaac |
335 |
Q |
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| T |
31701563 |
aatccagtacgagaaacaggtgcaacatggaagccacaaagatttattaacagataagaacttgttttcgtataccactaaccccccatcagaaaacaac |
31701464 |
T |
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| Q |
336 |
cagtacgtaccaatgagtacaaggacttcaactatcagcagctctgaaaatagtga |
391 |
Q |
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| T |
31701463 |
tagtacgtaccaataagtacaaggacttcaactatcagcagctctgaaaatagtga |
31701408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 3342693 - 3342829
Alignment:
| Q |
1 |
tgcagcattgaacaccatgcttcacaactagttaaaacaatccattgagtagttt-aagggtactgtgattttgtgatagcgcattctatgcgagtctga |
99 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||| ||||||| ||| | ||||||||||| ||| || | |
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| T |
3342693 |
tgcagcattgaacaccatgcttctcaactagttaaaacaatccattgtctagtttaaagggtacggtgatttggtggcaacgcattctatgggaggctca |
3342792 |
T |
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| Q |
100 |
atatactttatcagttattgttaaactctaagttttt |
136 |
Q |
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| T |
3342793 |
atataatttatcagttattgataatctcaaagttttt |
3342829 |
T |
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